Guide to the Human Genome
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Name: TUBGCP6 Sequence: fasta or formatted (1819aa) NCBI GI: 56788364
Description:

tubulin, gamma complex associated protein 6

Referenced in:

Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2        150           3
 C cysteine            2.0         36           2
 D aspartate           4.7         86           3
 E glutamate           7.0        128           3
 F phenylalanine       3.2         59           2
 G glycine             6.8        123           3
 H histidine           3.5         64           1
 I isoleucine          2.7         49           1
 K lysine              3.3         60           2
 L leucine            11.4        208           2
 M methionine          1.5         27           2
 N asparagine          2.8         51           2
 P proline             7.3        133           3
 Q glutamine           4.7         85           2
 R arginine            6.2        113           2
 S serine              9.2        167           2
 T threonine           3.9         71           1
 V valine              7.5        137           2
 W tryptophan          1.4         25           2
 Y tyrosine            2.6         47           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin, gamma complex associated protein 6 
TUBGCP5               0.021   tubulin, gamma complex associated protein 5 isoform...
TUBGCP5               0.021   tubulin, gamma complex associated protein 5 isoform...
TUBGCP3               0.018   tubulin, gamma complex associated protein 3 
TUBGCP4               0.016   tubulin, gamma complex associated protein 4 
TUBGCP2               0.014   tubulin, gamma complex associated protein 2 
LOC100133756          0.010   PREDICTED: hypothetical protein, partial 
GIGYF2                0.009   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.009   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.009   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.009   GRB10 interacting GYF protein 2 isoform b 
TNIK                  0.009   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.009   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.009   TRAF2 and NCK interacting kinase isoform 8 
TNIK                  0.009   TRAF2 and NCK interacting kinase isoform 7 
MAP4K4                0.008   mitogen-activated protein kinase kinase kinase kinas...
TNIK                  0.008   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.008   TRAF2 and NCK interacting kinase isoform 1 
MAP4K4                0.008   mitogen-activated protein kinase kinase kinase kinas...
TCHH                  0.008   trichohyalin 
LOC283767             0.007   golgi autoantigen, golgin subfamily a-like 
ENAH                  0.007   enabled homolog isoform b 
POLR2A                0.007   DNA-directed RNA polymerase II A 
TNIK                  0.007   TRAF2 and NCK interacting kinase isoform 4 
TNIK                  0.007   TRAF2 and NCK interacting kinase isoform 3 
ENAH                  0.007   enabled homolog isoform a 
MAP4K4                0.007   mitogen-activated protein kinase kinase kinase kinas...
MAP7D1                0.007   MAP7 domain containing 1 
INCENP                0.006   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.006   inner centromere protein antigens 135/155kDa isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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