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Search of human proteins with 38708313
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38708313 aspartate beta-hydroxylase domain containing 1
[Homo sapiens]
(390 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38708313 aspartate beta-hydroxylase domain containing 1 [Homo... 824 0.0
gi|194328779 aspartate beta-hydroxylase domain containing 2 [Hom... 283 2e-76
gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens] 85 1e-16
gi|12707580 paired-like homeobox 2b [Homo sapiens] 47 3e-05
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 46 5e-05
gi|16306552 semaphorin Y [Homo sapiens] 42 7e-04
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 41 0.002
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 40 0.004
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.005
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 39 0.008
gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo ... 39 0.010
gi|219842343 glutamate receptor, metabotropic 5 isoform a precur... 38 0.014
gi|4504143 glutamate receptor, metabotropic 5 isoform b precurso... 38 0.014
gi|208431817 protein kinase-like protein SgK493 [Homo sapiens] 38 0.014
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 38 0.018
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 38 0.018
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 37 0.023
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 37 0.023
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 37 0.023
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 37 0.023
gi|239752992 PREDICTED: hypothetical protein XP_002345322 [Homo ... 37 0.023
gi|239747550 PREDICTED: hypothetical protein XP_002347647 [Homo ... 37 0.023
gi|239741424 PREDICTED: hypothetical protein XP_002342197 [Homo ... 37 0.023
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.031
gi|40806170 spastin isoform 2 [Homo sapiens] 37 0.031
gi|11875211 spastin isoform 1 [Homo sapiens] 37 0.031
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 37 0.031
gi|239756555 PREDICTED: hypothetical protein XP_002344930 [Homo ... 37 0.040
gi|239751056 PREDICTED: hypothetical protein [Homo sapiens] 37 0.040
gi|239745519 PREDICTED: hypothetical protein XP_002343478 [Homo ... 37 0.040
>gi|38708313 aspartate beta-hydroxylase domain containing 1 [Homo
sapiens]
Length = 390
Score = 824 bits (2128), Expect = 0.0
Identities = 390/390 (100%), Positives = 390/390 (100%)
Query: 1 MKEGRGSFSVERGPRKERETAQSGMWKGNSPAGSQGAAMEGTGGELGGQGNWGPEDAPGL 60
MKEGRGSFSVERGPRKERETAQSGMWKGNSPAGSQGAAMEGTGGELGGQGNWGPEDAPGL
Sbjct: 1 MKEGRGSFSVERGPRKERETAQSGMWKGNSPAGSQGAAMEGTGGELGGQGNWGPEDAPGL 60
Query: 61 LARASLIMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRAGGVRGGPV 120
LARASLIMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRAGGVRGGPV
Sbjct: 61 LARASLIMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRAGGVRGGPV 120
Query: 121 GCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPGPGRGPG 180
GCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPGPGRGPG
Sbjct: 121 GCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPGPGRGPG 180
Query: 181 VLGIQRPGLLFLPDLPSAPFVPRDAQRHDVELLESSFPAILRDFGAVSWDFSGTTPPPRG 240
VLGIQRPGLLFLPDLPSAPFVPRDAQRHDVELLESSFPAILRDFGAVSWDFSGTTPPPRG
Sbjct: 181 VLGIQRPGLLFLPDLPSAPFVPRDAQRHDVELLESSFPAILRDFGAVSWDFSGTTPPPRG 240
Query: 241 WSPPLAPGCYQLLLYQAGRCQPSNCRRCPGAYRALRGLRSFMSANTFGNAGFSVLLPGAR 300
WSPPLAPGCYQLLLYQAGRCQPSNCRRCPGAYRALRGLRSFMSANTFGNAGFSVLLPGAR
Sbjct: 241 WSPPLAPGCYQLLLYQAGRCQPSNCRRCPGAYRALRGLRSFMSANTFGNAGFSVLLPGAR 300
Query: 301 LEGRCGPTNARVRCHLGLKIPPGCELVVGGEPQCWAEGHCLLVDDSFLHTVAHNGSPEDG 360
LEGRCGPTNARVRCHLGLKIPPGCELVVGGEPQCWAEGHCLLVDDSFLHTVAHNGSPEDG
Sbjct: 301 LEGRCGPTNARVRCHLGLKIPPGCELVVGGEPQCWAEGHCLLVDDSFLHTVAHNGSPEDG 360
Query: 361 PRVVFIVDLWHPNVAGAERQALDFVFAPDP 390
PRVVFIVDLWHPNVAGAERQALDFVFAPDP
Sbjct: 361 PRVVFIVDLWHPNVAGAERQALDFVFAPDP 390
>gi|194328779 aspartate beta-hydroxylase domain containing 2 [Homo
sapiens]
Length = 369
Score = 283 bits (724), Expect = 2e-76
Identities = 155/314 (49%), Positives = 190/314 (60%), Gaps = 25/314 (7%)
Query: 87 LTSLFLWYCYRLGSQD------MQALGAGSRAGGVRGGPVGCSEAGGPSPGGPGDPGEGP 140
L LF+WYCY +G + + +L + A G++ G V C SP +
Sbjct: 67 LLVLFVWYCYHVGREQPRPYVSVNSLMQAADANGLQNGYVYCQ-----SP----ECVRCT 117
Query: 141 RTEGLVSR---RLRAYARRYSWAGMGRVRRAA-QGGPGPGRGPGVLGIQRPGLLFLPDLP 196
EGL + L+ YA+RYSW+GMGR+ + + G P IQ+P + FLPDLP
Sbjct: 118 HNEGLNQKLYHNLQEYAKRYSWSGMGRIHKGIREQGRYLNSRPS---IQKPEVFFLPDLP 174
Query: 197 SAPFVPRDAQRHDVELLESSFPAILRDFGAVSWDFSGTTPPPRGWSPPLAPG--CYQLLL 254
+ P+ RDAQ+HDVE+LE +F IL +F + FS + P +GW P + L
Sbjct: 175 TTPYFSRDAQKHDVEVLERNFQTILCEFETLYKAFSNCSLP-QGWKMNSTPSGEWFTFYL 233
Query: 255 YQAGRCQPSNCRRCPGAYRALRGLRSFMSANTFGNAGFSVLLPGARLEGRCGPTNARVRC 314
G C P NCR+CP YR L LR+ + N FGNA SVL PG + GPTN R+RC
Sbjct: 234 VNQGVCVPRNCRKCPRTYRLLGSLRTCIGNNVFGNACISVLSPGTVITEHYGPTNIRIRC 293
Query: 315 HLGLKIPPGCELVVGGEPQCWAEGHCLLVDDSFLHTVAHNGSPEDGPRVVFIVDLWHPNV 374
HLGLK P GCELVVGGEPQCWAEG CLL DDSFLH H GS EDGPRVVF+VDLWHPNV
Sbjct: 294 HLGLKTPNGCELVVGGEPQCWAEGRCLLFDDSFLHAAFHEGSAEDGPRVVFMVDLWHPNV 353
Query: 375 AGAERQALDFVFAP 388
A AERQALDF+FAP
Sbjct: 354 AAAERQALDFIFAP 367
>gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens]
Length = 758
Score = 85.1 bits (209), Expect = 1e-16
Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 251 QLLLYQAGRCQPSNCRRCPGAYRALRGLRSFMSANTFGNAGFSVLLPGARLEGRCGPTNA 310
Q L+Q GR + C+ P L G +S++ PG + GPTN
Sbjct: 627 QFTLWQQGRRNENACKGAPKTCTLLEKFPETTGCRR-GQIKYSIMHPGTHVWPHTGPTNC 685
Query: 311 RVRCHLGLKIP-PGCELVVGGEPQCWAEGHCLLVDDSFLHTVAHNGSPEDGPRVVFIVDL 369
R+R HLGL IP GC++ E + W EG L+ DDSF H V + S R++FIVD+
Sbjct: 686 RLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDAS---SFRLIFIVDV 742
Query: 370 WHPNVAGAERQAL 382
WHP + +R++L
Sbjct: 743 WHPELTPQQRRSL 755
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 47.0 bits (110), Expect = 3e-05
Identities = 34/89 (38%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 113 GGVRGGPVGCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGG 172
GG GGP S AG P GPG PG P G + A A + A AA GG
Sbjct: 212 GGGGGGP---SPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGG 268
Query: 173 PGPGRGPGVLGIQRPG-LLFLPDLPSAPF 200
PG G PG PG + +PD PF
Sbjct: 269 PGQGWAPG------PGPITSIPDSLGGPF 291
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 46.2 bits (108), Expect = 5e-05
Identities = 75/296 (25%), Positives = 101/296 (34%), Gaps = 46/296 (15%)
Query: 6 GSFSVERGPRKERETAQSGMWKGNSPAGSQGAAMEGTGGELG-----GQGNWGPEDAPGL 60
G S+E G ++ SG ++ S G + G+ G G GP + G+
Sbjct: 98 GDLSLESGGLEQESGRSSGFYEDPSSTGGPDSPPSTFCGDSGFSGSSSYGRLGPSEPRGI 157
Query: 61 LARASLIMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRAGGVRGGPV 120
A L P A + S Y GS +A + R R GP
Sbjct: 158 YASERPKSLGDASPSAPEVVGARAAVPRSFSAPYPTAGGSAGPEACSSAERRA--RAGPF 215
Query: 121 ------------GCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRA 168
G P P G G +G +S LR RR G G+ R +
Sbjct: 216 LTPSPLHAVAMRSPRPCGRPPTDSPDAGGAGRPLDGYISALLRRRRRR----GAGQPRTS 271
Query: 169 AQGGP-GPGRGPGVLGIQRPGLLFLPDLPSAPFVPRDAQRHDVELL--ESSFPAILRDFG 225
G GP R V QRP PD +P R A+ +E + + PA L
Sbjct: 272 PGGADGGPRRQNSVR--QRP-----PDASPSPGSARPAREPSLERVGGHPTSPAALSRAW 324
Query: 226 AVSWDFSGT---TPPPRGWSPPLAPGCYQLLLYQAGRCQPSNCRRCPGAYRALRGL 278
A SW+ PP SPP +P +L+ + PGA A RGL
Sbjct: 325 ASSWESEAAPEPAAPPAAPSPPDSPAEGRLV----------KAQYIPGAQAATRGL 370
>gi|16306552 semaphorin Y [Homo sapiens]
Length = 930
Score = 42.4 bits (98), Expect = 7e-04
Identities = 62/250 (24%), Positives = 85/250 (34%), Gaps = 55/250 (22%)
Query: 28 GNSPAGSQGAAMEGTGGELGGQGNWGPEDAPGLLARASLIMLPWPLPLASSALTLLFGAL 87
GN + G +G G G G+ L ++ +P PL LAS A GA
Sbjct: 560 GNQESMEHGDCQDGATGSQSGPGDSAYGVRRDLPPASASRSVPIPLLLASVAAAFALGAS 619
Query: 88 TSLFLWYC-----YRLGSQDMQALGAGSRAGGVRGGPVGCSEAGGPSPGGPGDPGEGPRT 142
S L C +R +D++ G R +R + GGP P P G+ +T
Sbjct: 620 VSGLLVSCACRRAHRRRGKDIETPGL-PRPLSLRS--LARLHGGGPEPPPPSKDGDAVQT 676
Query: 143 EGLVS----------------------------RRLRAYARRYSWAGMGRVRRAAQGGPG 174
L + + LRA + W + R A+ GPG
Sbjct: 677 PQLYTTFLPPPEGVPPPELACLPTPESTPELPVKHLRAAGDPWEW---NQNRNNAKEGPG 733
Query: 175 PGRGPGVLGIQRPGLLFLPDLPSAPFVPRDAQRHDVELLESSFPAILRDFGAVSWDFSGT 234
RG G P +L P P P Q +V LE +LR G
Sbjct: 734 RSRGGHAAGGPAPRVLVRPPPPGCP-----GQAVEVTTLEE----LLR-------YLHGP 777
Query: 235 TPPPRGWSPP 244
PP +G PP
Sbjct: 778 QPPRKGAEPP 787
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 40.8 bits (94), Expect = 0.002
Identities = 49/168 (29%), Positives = 66/168 (39%), Gaps = 38/168 (22%)
Query: 33 GSQGAAMEGTGGELGGQGNWGPEDAPGLLARASLIMLPWPLPLASSALTLLFGALTSLFL 92
G QG +G GE G +GN G + APG P + L G L +
Sbjct: 1249 GDQGE--QGLKGERGSEGNKGKKGAPG--------------PSGKPGIPGLQGLLGPKGI 1292
Query: 93 WYCYRLG--SQDMQALGAGSRAG--GVRGGPVGCSEAGGPSPGG-------PGDPG-EGP 140
+ S + +G + G G+RGGP AG P P G PG PG +GP
Sbjct: 1293 QGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGSSGLPGSPGIQGP 1352
Query: 141 RTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPGPGRGPGVLGIQRPG 188
+ E + + + R R AQG GP PG+ G +PG
Sbjct: 1353 KGEQGLPGQPGIQGK--------RGHRGAQGDQGPCGDPGLKG--QPG 1390
Score = 30.4 bits (67), Expect = 2.9
Identities = 47/167 (28%), Positives = 60/167 (35%), Gaps = 29/167 (17%)
Query: 32 AGSQGAAMEGTGGELGGQGNWGPEDAPGLLARASLIMLPWPLPLASSALTLLFGALTSLF 91
+G +GA GT G +G G GP+ PG+ P P L + S
Sbjct: 1142 SGPKGA--RGTRGAVGHLGLMGPDGEPGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTV 1199
Query: 92 LWYCYRLGSQDM---QALGAGSRAGGVRG-----GPVGCSEAGGPSPGGPGDPGEGPRTE 143
L G Q A G +G G G + GP PG PGD GE +
Sbjct: 1200 LGPPGPRGEPGPVGDQGERGEPGAEGYKGHVGVPGLRGATGQQGP-PGEPGDQGE----Q 1254
Query: 144 GLVSRRLRAYARRYSWAGMGRVRRAAQGGPGPGRGPGVLGIQRPGLL 190
GL R + +G PGP PG+ G+Q GLL
Sbjct: 1255 GLKGER------------GSEGNKGKKGAPGPSGKPGIPGLQ--GLL 1287
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 40.0 bits (92), Expect = 0.004
Identities = 36/105 (34%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Query: 103 MQALGAGSRAGGVRGG------------PVGCSEAGGPSPGGPGDPGEGPRTEGLVSRRL 150
M A A + A G GG P EAG +PGG GD G G +E L L
Sbjct: 1 MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEEL 60
Query: 151 RAYARRYSWAGMGRVR-RAAQGGPGPGRGPGVLGIQ----RPGLL 190
R RA G PGPG G G G Q PGL+
Sbjct: 61 LLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLV 105
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.7 bits (91), Expect = 0.005
Identities = 61/194 (31%), Positives = 68/194 (35%), Gaps = 42/194 (21%)
Query: 13 GPRKERETAQSGMWKGNSPAGSQGAAMEGTGGELGGQGNWGPEDAPGLLARASLIMLPWP 72
GPR Q G+ P G+ GA G GE GG G GP+ PG P P
Sbjct: 570 GPR-----GQPGVMGFPGPKGNDGAP--GKNGERGGPGGPGPQGPPGKNGETGPQGPPGP 622
Query: 73 L-PLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRAGGVRGGPVGCSEAGGP-SP 130
P T G G Q + G G G P +AG P +P
Sbjct: 623 TGPGGDKGDTGPPGPQ-----------GLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAP 671
Query: 131 GGPGD---PGE-GPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPGPGRGPGVLGIQ- 185
GG GD PGE GP GL AG +R A G PGP G G G
Sbjct: 672 GGKGDAGAPGERGP--PGL--------------AGAPGLRGGA-GPPGPEGGKGAAGPPG 714
Query: 186 RPGLLFLPDLPSAP 199
PG P L P
Sbjct: 715 PPGAAGTPGLQGMP 728
Score = 35.8 bits (81), Expect = 0.068
Identities = 51/196 (26%), Positives = 60/196 (30%), Gaps = 26/196 (13%)
Query: 4 GRGSFSVERGPRKERETA--------QSGMWKGNSPAGSQGAAMEGTGGELGGQ---GNW 52
G+ E GPR ER A + K SP + G GE G G
Sbjct: 435 GKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPA 494
Query: 53 GPEDAPGLLARASLIMLPWPL-PLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSR 111
GP PG A P P P ++ G G + M G
Sbjct: 495 GPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGG--------PGMRGMPGSPGGPG 546
Query: 112 AGGVRGGPVGCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQG 171
+ G G P E+G P P GP P P G + A R G
Sbjct: 547 SDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPG------PKGNDGAPGKNGERGGPG 600
Query: 172 GPGPGRGPGVLGIQRP 187
GPGP PG G P
Sbjct: 601 GPGPQGPPGKNGETGP 616
Score = 32.3 bits (72), Expect = 0.75
Identities = 52/174 (29%), Positives = 60/174 (34%), Gaps = 46/174 (26%)
Query: 33 GSQGAAMEGTGGELGGQGNWGPEDAPGLLARASLIMLPWPLPLASSALTLLFGALTSLFL 92
G +G A G G GG+G GP PG L +P G L S
Sbjct: 693 GLRGGA--GPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGER-----------GGLGSP-- 737
Query: 93 WYCYRLGSQDMQALGAGSRAGGVRG-----GPVGCSEAGGPSPGG-PGDPGEG--PRTEG 144
G + + G A GV G GP G G P P G PGD GEG P G
Sbjct: 738 ------GPKGDKGEPGGPGADGVPGKDGPRGPTG--PIGPPGPAGQPGDKGEGGAPGLPG 789
Query: 145 LVSRRLRAYARRYSW----AGM-----------GRVRRAAQGGPGPGRGPGVLG 183
+ R R + AG G+ R A G G G PGV G
Sbjct: 790 IAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAG 843
Score = 31.6 bits (70), Expect = 1.3
Identities = 55/205 (26%), Positives = 64/205 (31%), Gaps = 46/205 (22%)
Query: 2 KEGRGSFSVERGPRKERE------TAQSGMWKGNSPAGSQGAAMEGTGGELGGQGNWGPE 55
K G S ERGP + TA GN GS G + G G GG+G+ G
Sbjct: 982 KPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNP--GSDG--LPGRDGSPGGKGDRGEN 1037
Query: 56 DAPGLLARASLIMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRAGGV 115
+PG P P+ A S D G AG
Sbjct: 1038 GSPGAPGAPGHPGPPGPVGPAGK---------------------SGDRGESGPAGPAGA- 1075
Query: 116 RGGPVGCSEAGGPSPGGP-GDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPG 174
GP G G P P GP GD GE + R + A G PG
Sbjct: 1076 -PGPAG--SRGAPGPQGPRGDKGETGERGAAGIKGHRGFPG----------NPGAPGSPG 1122
Query: 175 PGRGPGVLGIQRPGLLFLPDLPSAP 199
P G +G P P PS P
Sbjct: 1123 PAGQQGAIGSPGPAGPRGPVGPSGP 1147
Score = 28.9 bits (63), Expect = 8.3
Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 36 GAAMEGTGGELGGQGNWGPEDAPGLLARASLIMLPWPLPLASSALTLLFGALTSLFLWYC 95
G +G G+ G G G PG+ + P P + S T G Y
Sbjct: 101 GQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPT---GPQN-----YS 152
Query: 96 YRLGSQDMQALGAGSRAGGVRG--GPVGCSEAGGP-----SPGGPGDPG-EGPRTE 143
+ S D+++ G GG+ G GP G GP PG PG PG +GP E
Sbjct: 153 PQYDSYDVKS---GVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGE 205
Score = 28.9 bits (63), Expect = 8.3
Identities = 29/86 (33%), Positives = 32/86 (37%), Gaps = 22/86 (25%)
Query: 118 GPVGCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPGPGR 177
GP G E G P P GP P +G+ GM R + GGPG
Sbjct: 504 GPAG--ERGAPGPAGPRGAAGEPGRDGVP-----------GGPGM-RGMPGSPGGPGSDG 549
Query: 178 GPGVLGIQ----RPGLLFLPDLPSAP 199
PG G Q RPG P PS P
Sbjct: 550 KPGPPGSQGESGRPG----PPGPSGP 571
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 38.9 bits (89), Expect = 0.008
Identities = 28/77 (36%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 107 GAGSRAGGVRGGPVGCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVR 166
GA + GG G AG GGPG PG GP G G V
Sbjct: 53 GAYTYGGGGSAAATGAGGAGAYGTGGPGGPG-GPAGGG-------GACSMGPLTGSYNVN 104
Query: 167 RAAQGGPGPGRGPGVLG 183
A GGPGPG G G G
Sbjct: 105 MALAGGPGPGGGGGSSG 121
>gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo
sapiens]
Length = 286
Score = 38.5 bits (88), Expect = 0.010
Identities = 41/117 (35%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 55 EDAPGLLARASLIMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAG-SRAG 113
+D LLA ++ L A A TL A T+ L G + Q LG G S AG
Sbjct: 117 DDLHALLAIQVIVQLLCAAAEARGAATLPAAAATTTALDGPGAGGGAEAQFLGGGRSSAG 176
Query: 114 GVRGGPVGCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQ 170
G GG G G G G+ G GPR + V RRL A R + R+RRA +
Sbjct: 177 GGGGGGGGGGGRGSRRGRGGGERG-GPRAQA-VRRRLSALRGRGRRRRLKRLRRAQE 231
>gi|219842343 glutamate receptor, metabotropic 5 isoform a precursor
[Homo sapiens]
Length = 1212
Score = 38.1 bits (87), Expect = 0.014
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 100 SQDMQALGAGSRAGGVRGGPVGCSEAG--GPSPGGPGDPGEGPR 141
S + + LGAG+ AGG GG AG G PGGP P GP+
Sbjct: 955 STESRGLGAGAGAGGSAGGVGATGGAGCAGAGPGGPESPDAGPK 998
>gi|4504143 glutamate receptor, metabotropic 5 isoform b precursor
[Homo sapiens]
Length = 1180
Score = 38.1 bits (87), Expect = 0.014
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 100 SQDMQALGAGSRAGGVRGGPVGCSEAG--GPSPGGPGDPGEGPR 141
S + + LGAG+ AGG GG AG G PGGP P GP+
Sbjct: 923 STESRGLGAGAGAGGSAGGVGATGGAGCAGAGPGGPESPDAGPK 966
>gi|208431817 protein kinase-like protein SgK493 [Homo sapiens]
Length = 493
Score = 38.1 bits (87), Expect = 0.014
Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 105 ALGAGSRAGGVRGGPVGCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGR 164
A+ AG A + G + A G P PG E G R R R A
Sbjct: 7 AVAAGFCASFLLGSVLNVLFAPGSEPPRPGQSPEPSPAPGPGRRGGRGELARQIRARYEE 66
Query: 165 VRRAAQGGPGPGRGPGVLGIQRPGLLFLPDL-PSAPFVPR 203
V+R ++GGPGPG G RP L DL P P +PR
Sbjct: 67 VQRYSRGGPGPGAG-------RPERRRLMDLAPGGPGLPR 99
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 37.7 bits (86), Expect = 0.018
Identities = 51/167 (30%), Positives = 62/167 (37%), Gaps = 16/167 (9%)
Query: 97 RLGSQDMQALGAGSRAGGVRGGPVGCSEAG-GP--SPGGPGDPGEGPRTEGLVSRRLRAY 153
RLG Q G A GG C + G GP P +PG R + R RA
Sbjct: 388 RLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRAR 447
Query: 154 ARRYS--------WA-GMGRVRRAAQGGPG-PGRGPGVLGIQRPGLLFLPDLPSAPFVPR 203
AR S W G GRV + G G P R G RP + LP+LP+ R
Sbjct: 448 ARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVD-PAR 506
Query: 204 DAQRH-DVELLESSFPA-ILRDFGAVSWDFSGTTPPPRGWSPPLAPG 248
D +R D + + + GA G P P SP PG
Sbjct: 507 DTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPG 553
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 37.7 bits (86), Expect = 0.018
Identities = 51/167 (30%), Positives = 62/167 (37%), Gaps = 16/167 (9%)
Query: 97 RLGSQDMQALGAGSRAGGVRGGPVGCSEAG-GP--SPGGPGDPGEGPRTEGLVSRRLRAY 153
RLG Q G A GG C + G GP P +PG R + R RA
Sbjct: 388 RLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRAR 447
Query: 154 ARRYS--------WA-GMGRVRRAAQGGPG-PGRGPGVLGIQRPGLLFLPDLPSAPFVPR 203
AR S W G GRV + G G P R G RP + LP+LP+ R
Sbjct: 448 ARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVD-PAR 506
Query: 204 DAQRH-DVELLESSFPA-ILRDFGAVSWDFSGTTPPPRGWSPPLAPG 248
D +R D + + + GA G P P SP PG
Sbjct: 507 DTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPG 553
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 37.4 bits (85), Expect = 0.023
Identities = 56/193 (29%), Positives = 72/193 (37%), Gaps = 35/193 (18%)
Query: 4 GRGSFSVERGPRKERETAQSGMWKGN-----SPAGSQGA-AMEGTGGELGGQGNWGPEDA 57
G G++ E+G + E + GM PAG G ++G G G G+ GP
Sbjct: 430 GHGAYG-EKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGR 488
Query: 58 PGLLARASLIMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRAG-GVR 116
PGL LP P P L +G S + +Q+ QA +A +R
Sbjct: 489 PGLPGADG---LPGP-PGTMLMLPFRYGGDGS----KGPTISAQEAQAQAILQQARIALR 540
Query: 117 GGPVGCSEAGGPSP-GGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPGP 175
G P G P P GGPG G A+ S + R QG PGP
Sbjct: 541 GPPGPMGLTGRPGPVGGPGSSG----------------AKGESGDPGPQGPRGVQGPPGP 584
Query: 176 GRGPGVLGIQRPG 188
PG G RPG
Sbjct: 585 TGKPGKRG--RPG 595
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 37.4 bits (85), Expect = 0.023
Identities = 56/193 (29%), Positives = 72/193 (37%), Gaps = 35/193 (18%)
Query: 4 GRGSFSVERGPRKERETAQSGMWKGN-----SPAGSQGA-AMEGTGGELGGQGNWGPEDA 57
G G++ E+G + E + GM PAG G ++G G G G+ GP
Sbjct: 379 GHGAYG-EKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGR 437
Query: 58 PGLLARASLIMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRAG-GVR 116
PGL LP P P L +G S + +Q+ QA +A +R
Sbjct: 438 PGLPGADG---LPGP-PGTMLMLPFRYGGDGS----KGPTISAQEAQAQAILQQARIALR 489
Query: 117 GGPVGCSEAGGPSP-GGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPGP 175
G P G P P GGPG G A+ S + R QG PGP
Sbjct: 490 GPPGPMGLTGRPGPVGGPGSSG----------------AKGESGDPGPQGPRGVQGPPGP 533
Query: 176 GRGPGVLGIQRPG 188
PG G RPG
Sbjct: 534 TGKPGKRG--RPG 544
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 37.4 bits (85), Expect = 0.023
Identities = 56/193 (29%), Positives = 72/193 (37%), Gaps = 35/193 (18%)
Query: 4 GRGSFSVERGPRKERETAQSGMWKGN-----SPAGSQGA-AMEGTGGELGGQGNWGPEDA 57
G G++ E+G + E + GM PAG G ++G G G G+ GP
Sbjct: 418 GHGAYG-EKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGR 476
Query: 58 PGLLARASLIMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRAG-GVR 116
PGL LP P P L +G S + +Q+ QA +A +R
Sbjct: 477 PGLPGADG---LPGP-PGTMLMLPFRYGGDGS----KGPTISAQEAQAQAILQQARIALR 528
Query: 117 GGPVGCSEAGGPSP-GGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPGP 175
G P G P P GGPG G A+ S + R QG PGP
Sbjct: 529 GPPGPMGLTGRPGPVGGPGSSG----------------AKGESGDPGPQGPRGVQGPPGP 572
Query: 176 GRGPGVLGIQRPG 188
PG G RPG
Sbjct: 573 TGKPGKRG--RPG 583
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 37.4 bits (85), Expect = 0.023
Identities = 56/187 (29%), Positives = 68/187 (36%), Gaps = 20/187 (10%)
Query: 2 KEG-RGSFSVERGPRKERETAQSGMWKGNSPAGSQGAAMEGTGGELGGQGNWGPEDAPGL 60
+EG RG V P T G P GSQG G GE G QG GP+ +PGL
Sbjct: 1556 REGQRGLRGVSGEPGNPGPTGTLGAEGLQGPQGSQGNP--GRKGEKGSQGQKGPQGSPGL 1613
Query: 61 LARASLIMLPWPLPLASSALTLLFGALTSL-FLWYCYRLGSQDMQALGAGSRAG--GVRG 117
+ P L L G L + R G + G R G G RG
Sbjct: 1614 MGAKGSTGRPG--LLGKKGEPGLPGDLGPVGQTGQRGRQGDSGIPGYGQMGRKGVKGPRG 1671
Query: 118 GPVGCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPGPGR 177
P + G G PG PG GP +G R A G ++G PGP
Sbjct: 1672 FPGDAGQKG--DIGNPGIPG-GPGPKG-----FRGLALTVGLKG----EEGSRGLPGPPG 1719
Query: 178 GPGVLGI 184
G+ G+
Sbjct: 1720 QRGIKGM 1726
Score = 32.0 bits (71), Expect = 0.98
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 99 GSQDMQALGAGSRAGGVRGGPVGCSEAGGPSPGG----PGDPGEGPRTEGLVSRRLRAYA 154
GS+ Q S GV+G P G G G+PG T L + L+
Sbjct: 1528 GSKGEQGRQGRSGQKGVQGSPSSRGSRGREGQRGLRGVSGEPGNPGPTGTLGAEGLQG-- 1585
Query: 155 RRYSWAGMGRV-RRAAQGGPGPGRGPGVLGIQ----RPGLLFLPDLPSAP 199
+ S GR + +QG GP PG++G + RPGLL P P
Sbjct: 1586 PQGSQGNPGRKGEKGSQGQKGPQGSPGLMGAKGSTGRPGLLGKKGEPGLP 1635
>gi|239752992 PREDICTED: hypothetical protein XP_002345322 [Homo
sapiens]
Length = 277
Score = 37.4 bits (85), Expect = 0.023
Identities = 53/190 (27%), Positives = 66/190 (34%), Gaps = 18/190 (9%)
Query: 97 RLGSQDMQALGAGSRAGGVRGGP--VGCSEAGGPSPGGP-GDPGEGPRTEGLVSRRLRAY 153
RLG + + RA RG P G GP P PRT + RA
Sbjct: 57 RLGKAAGPSRNSSPRAFRGRGSPKFAGAVRESAEDGEGPFSSPWNSPRTTPKAALSSRAG 116
Query: 154 ARRYS--WAGMGRVRRAAQGGP---GPGRGPGVLGI----QRPGLLFLPDLPSAPFVPRD 204
+ R G+ ++A +G P GR P Q PG P+ P P
Sbjct: 117 SGRIGERQGTQGKKKKAQEGTPVCQTRGRSPSRTSFHGETQIPGA---PEGRKPPSCPGK 173
Query: 205 AQRHDVELLESSFPAILR-DFGAVSWDFSGTTPPPRGWSPPLAPGCYQLLLYQAGRCQPS 263
QR D+ S P L D GA SW S P +G P +PG + QP
Sbjct: 174 DQR-DINYKSSGTPRSLEPDEGAASWASSPVCSPVQGKRPSPSPGAISFSSVHQ-QSQPV 231
Query: 264 NCRRCPGAYR 273
P YR
Sbjct: 232 TATVAPFQYR 241
>gi|239747550 PREDICTED: hypothetical protein XP_002347647 [Homo
sapiens]
Length = 277
Score = 37.4 bits (85), Expect = 0.023
Identities = 53/190 (27%), Positives = 66/190 (34%), Gaps = 18/190 (9%)
Query: 97 RLGSQDMQALGAGSRAGGVRGGP--VGCSEAGGPSPGGP-GDPGEGPRTEGLVSRRLRAY 153
RLG + + RA RG P G GP P PRT + RA
Sbjct: 57 RLGKAAGPSRNSSPRAFRGRGSPKFAGAVRESAEDGEGPFSSPWNSPRTTPKAALSSRAG 116
Query: 154 ARRYS--WAGMGRVRRAAQGGP---GPGRGPGVLGI----QRPGLLFLPDLPSAPFVPRD 204
+ R G+ ++A +G P GR P Q PG P+ P P
Sbjct: 117 SGRIGERQGTQGKKKKAQEGTPVCQTRGRSPSRTSFHGETQIPGA---PEGRKPPSCPGK 173
Query: 205 AQRHDVELLESSFPAILR-DFGAVSWDFSGTTPPPRGWSPPLAPGCYQLLLYQAGRCQPS 263
QR D+ S P L D GA SW S P +G P +PG + QP
Sbjct: 174 DQR-DINYKSSGTPRSLEPDEGAASWASSPVCSPVQGKRPSPSPGAISFSSVHQ-QSQPV 231
Query: 264 NCRRCPGAYR 273
P YR
Sbjct: 232 TATVAPFQYR 241
>gi|239741424 PREDICTED: hypothetical protein XP_002342197 [Homo
sapiens]
Length = 277
Score = 37.4 bits (85), Expect = 0.023
Identities = 53/190 (27%), Positives = 66/190 (34%), Gaps = 18/190 (9%)
Query: 97 RLGSQDMQALGAGSRAGGVRGGP--VGCSEAGGPSPGGP-GDPGEGPRTEGLVSRRLRAY 153
RLG + + RA RG P G GP P PRT + RA
Sbjct: 57 RLGKAAGPSRNSSPRAFRGRGSPKFAGAVRESAEDGEGPFSSPWNSPRTTPKAALSSRAG 116
Query: 154 ARRYS--WAGMGRVRRAAQGGP---GPGRGPGVLGI----QRPGLLFLPDLPSAPFVPRD 204
+ R G+ ++A +G P GR P Q PG P+ P P
Sbjct: 117 SGRIGERQGTQGKKKKAQEGTPVCQTRGRSPSRTSFHGETQIPGA---PEGRKPPSCPGK 173
Query: 205 AQRHDVELLESSFPAILR-DFGAVSWDFSGTTPPPRGWSPPLAPGCYQLLLYQAGRCQPS 263
QR D+ S P L D GA SW S P +G P +PG + QP
Sbjct: 174 DQR-DINYKSSGTPRSLEPDEGAASWASSPVCSPVQGKRPSPSPGAISFSSVHQ-QSQPV 231
Query: 264 NCRRCPGAYR 273
P YR
Sbjct: 232 TATVAPFQYR 241
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 37.0 bits (84), Expect = 0.031
Identities = 54/196 (27%), Positives = 66/196 (33%), Gaps = 43/196 (21%)
Query: 3 EGRGSFSVERGPRKERETAQSGMWKGNSPAGSQGAA-------MEGTGGELGGQGNWGPE 55
EG G E+G + E + GM P G +G A G G++G G GP
Sbjct: 443 EGIGGPRGEKGQKGEPAIIEPGMLI-EGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPP 501
Query: 56 DAPGLLARASL-----IMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGS 110
PGL L ML P G + S + Q AL +
Sbjct: 502 GRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPA 561
Query: 111 RAGGVRG--GPVGCSEAGGPSPGGPGDPG-EGPRTEGLVSRRLRAYARRYSWAGMGRVRR 167
G+ G GPVG +GG G PGD G +GP R
Sbjct: 562 GPMGLTGRPGPVGPPGSGG-LKGEPGDVGPQGP--------------------------R 594
Query: 168 AAQGGPGPGRGPGVLG 183
QG PGP PG G
Sbjct: 595 GVQGPPGPAGKPGRRG 610
>gi|40806170 spastin isoform 2 [Homo sapiens]
Length = 584
Score = 37.0 bits (84), Expect = 0.031
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 53 GPEDAPGLLARASLIMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRA 112
GP P + +L +PL + + L L+ L LF+W C R +AL A R+
Sbjct: 37 GPAPPPESPHKRNLYYFSYPLFVGFALLRLVAFHLGLLFVWLCQRFS----RALMAAKRS 92
Query: 113 GGVRGGPVGCSEAGGPSPGGPGD 135
G P S A P PGG +
Sbjct: 93 SGAAPAPASAS-APAPVPGGEAE 114
>gi|11875211 spastin isoform 1 [Homo sapiens]
Length = 616
Score = 37.0 bits (84), Expect = 0.031
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 53 GPEDAPGLLARASLIMLPWPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRA 112
GP P + +L +PL + + L L+ L LF+W C R +AL A R+
Sbjct: 37 GPAPPPESPHKRNLYYFSYPLFVGFALLRLVAFHLGLLFVWLCQRFS----RALMAAKRS 92
Query: 113 GGVRGGPVGCSEAGGPSPGGPGD 135
G P S A P PGG +
Sbjct: 93 SGAAPAPASAS-APAPVPGGEAE 114
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 37.0 bits (84), Expect = 0.031
Identities = 59/216 (27%), Positives = 75/216 (34%), Gaps = 40/216 (18%)
Query: 116 RGGPVGCSEAGGPSPGGPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQGGPGP 175
+ GP G G P GP P P +GL A+G PGP
Sbjct: 58 KAGPPG--PKGEPGKAGPDGPDGKPGIDGLTG---------------------AKGEPGP 94
Query: 176 GRGPGVLGIQRPGLLFLPDLPSAPFVPRDAQRHDVELL-ESSFPAILRDFGAVSWDFSGT 234
PGV G +PGL P LP F V L E D G G
Sbjct: 95 MGIPGVKG--QPGLPGPPGLPGPGFAGPPGPPGPVGLPGEIGIRGPKGDPGP-----DGP 147
Query: 235 TPPPRGWSPPLAPGCYQLLLYQAGRCQPSNCRRCPGAYRALRGLRSFMSANTFGNAGFSV 294
+ PP P PG Q L A P+N CP + GL+ G+AG
Sbjct: 148 SGPPGPPGKPGRPGTIQGLEGSADFLCPTN---CPPGMKGPPGLQGVK-----GHAGKRG 199
Query: 295 LLPGARLEGRCGPT-NARVRCHLGLKIPPGCELVVG 329
+L +G+ GP + G+ PPG + + G
Sbjct: 200 ILGDPGHQGKPGPKGDVGASGEQGIPGPPGPQGIRG 235
Score = 32.3 bits (72), Expect = 0.75
Identities = 59/218 (27%), Positives = 82/218 (37%), Gaps = 51/218 (23%)
Query: 2 KEGRGSFSVERGPRKERETAQSGMWKGNSPAGSQGA-AMEGTGGELGGQGNWGPEDAPGL 60
++G S E GP+ ++ + G P+G GA ++G G G +G G PG
Sbjct: 452 EKGEKGESGEPGPKGQQGVRGEPGYPG--PSGDAGAPGVQGYPGPPGPRGLAGNRGVPGQ 509
Query: 61 LARASLIMLP-WPLPLASSALTLLFGALTSLFLWYCYRLGSQDMQALGAGSRAGGVRGGP 119
R + + AL +L L + + S +ALGA G+ G P
Sbjct: 510 PGRQGVEGRDATDQHIVDVALKMLQEQLAEVAV-------SAKREALGAV----GMMGPP 558
Query: 120 VGCSEAGGPSPGGPGDPGE-------GPR-TEGLVSRRLRAYARRYSWAGMGRVRRAAQG 171
GP PG PG PG+ GPR G+V G V +
Sbjct: 559 -------GP-PGPPGYPGKQGPHGHPGPRGVPGIV----------------GAVGQIGNT 594
Query: 172 GPGPGRG----PGVLGIQRPGLLFLPDLPSAPFVPRDA 205
GP RG PG +G PG+ P +P P P A
Sbjct: 595 GPKGKRGEKGDPGEVGRGHPGMPGPPGIPGLPGRPGQA 632
>gi|239756555 PREDICTED: hypothetical protein XP_002344930 [Homo
sapiens]
Length = 345
Score = 36.6 bits (83), Expect = 0.040
Identities = 43/164 (26%), Positives = 57/164 (34%), Gaps = 12/164 (7%)
Query: 98 LGSQDMQALGAGSRAGGVRGGPVGCSEAGGPSPGGPG-DPGEGPRTEGLVSRRLRAYARR 156
+G D A GAG AG P E P P G +P R R AR+
Sbjct: 36 VGLDDDTAEGAGPDAGAGLEAPDAADEGAEPGPAWDGAEPAAAARRSSASRGRSPPRARK 95
Query: 157 YS---WAGMGRVRRAAQGGPGPGRGPGVLGIQRPGLLFLPDLPSAPFVPRDAQRHDVELL 213
S A M RVRRA R + G+ F P S A++++ E +
Sbjct: 96 RSIPPAALMWRVRRA--------RSARLRGVSLVAGSFSPPRASPAAAASCARQNESESV 147
Query: 214 ESSFPAILRDFGAVSWDFSGTTPPPRGWSPPLAPGCYQLLLYQA 257
F A + + S P R W + G L L+ A
Sbjct: 148 RVGFAAAILARASDSAPLLAADPRERNWKTGKSSGTASLTLFSA 191
>gi|239751056 PREDICTED: hypothetical protein [Homo sapiens]
Length = 345
Score = 36.6 bits (83), Expect = 0.040
Identities = 43/164 (26%), Positives = 57/164 (34%), Gaps = 12/164 (7%)
Query: 98 LGSQDMQALGAGSRAGGVRGGPVGCSEAGGPSPGGPG-DPGEGPRTEGLVSRRLRAYARR 156
+G D A GAG AG P E P P G +P R R AR+
Sbjct: 36 VGLDDDTAEGAGPDAGAGLEAPDAADEGAEPGPAWDGAEPAAAARRSSASRGRSPPRARK 95
Query: 157 YS---WAGMGRVRRAAQGGPGPGRGPGVLGIQRPGLLFLPDLPSAPFVPRDAQRHDVELL 213
S A M RVRRA R + G+ F P S A++++ E +
Sbjct: 96 RSIPPAALMWRVRRA--------RSARLRGVSLVAGSFSPPRASPAAAASCARQNESESV 147
Query: 214 ESSFPAILRDFGAVSWDFSGTTPPPRGWSPPLAPGCYQLLLYQA 257
F A + + S P R W + G L L+ A
Sbjct: 148 RVGFAAAILARASDSAPLLAADPRERNWKTGKSSGTASLTLFSA 191
>gi|239745519 PREDICTED: hypothetical protein XP_002343478 [Homo
sapiens]
Length = 345
Score = 36.6 bits (83), Expect = 0.040
Identities = 43/164 (26%), Positives = 57/164 (34%), Gaps = 12/164 (7%)
Query: 98 LGSQDMQALGAGSRAGGVRGGPVGCSEAGGPSPGGPG-DPGEGPRTEGLVSRRLRAYARR 156
+G D A GAG AG P E P P G +P R R AR+
Sbjct: 36 VGLDDDTAEGAGPDAGAGLEAPDAADEGAEPGPAWDGAEPAAAARRSSASRGRSPPRARK 95
Query: 157 YS---WAGMGRVRRAAQGGPGPGRGPGVLGIQRPGLLFLPDLPSAPFVPRDAQRHDVELL 213
S A M RVRRA R + G+ F P S A++++ E +
Sbjct: 96 RSIPPAALMWRVRRA--------RSARLRGVSLVAGSFSPPRASPAAAASCARQNESESV 147
Query: 214 ESSFPAILRDFGAVSWDFSGTTPPPRGWSPPLAPGCYQLLLYQA 257
F A + + S P R W + G L L+ A
Sbjct: 148 RVGFAAAILARASDSAPLLAADPRERNWKTGKSSGTASLTLFSA 191
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.141 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,872,964
Number of Sequences: 37866
Number of extensions: 1309266
Number of successful extensions: 9367
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 282
Number of HSP's that attempted gapping in prelim test: 7195
Number of HSP's gapped (non-prelim): 2295
length of query: 390
length of database: 18,247,518
effective HSP length: 104
effective length of query: 286
effective length of database: 14,309,454
effective search space: 4092503844
effective search space used: 4092503844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.