Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291645 Sequence: fasta or formatted (345aa) NCBI GI: 239756555
Description:

PREDICTED: hypothetical protein XP_002344930

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.5         57           4
 C cysteine            1.4          5           1
 D aspartate           3.8         13           3
 E glutamate           3.8         13           1
 F phenylalanine       1.7          6           1
 G glycine             9.6         33           2
 H histidine           1.4          5           1
 I isoleucine          0.6          2           1
 K lysine              2.0          7           1
 L leucine             7.2         25           2
 M methionine          1.2          4           1
 N asparagine          1.7          6           1
 P proline             9.0         31           2
 Q glutamine           2.3          8           2
 R arginine           12.2         42           3
 S serine             12.8         44           2
 T threonine           4.3         15           1
 V valine              7.0         24           2
 W tryptophan          1.2          4           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344930 
LOC100289478          1.000   PREDICTED: hypothetical protein 
LOC100289478          0.997   PREDICTED: hypothetical protein XP_002343478 
SRRM2                 0.023   splicing coactivator subunit SRm300 
GRIN2D                0.023   N-methyl-D-aspartate receptor subunit 2D precursor ...
LOC100292934          0.023   PREDICTED: hypothetical protein 
GNAS                  0.021   GNAS complex locus XLas 
LOC100133756          0.020   PREDICTED: hypothetical protein, partial 
ARMCX2                0.020   ALEX2 protein 
BTBD11                0.020   BTB (POZ) domain containing 11 isoform a 
ARMCX2                0.020   ALEX2 protein 
LOC100291912          0.018   PREDICTED: hypothetical protein XP_002344618 
LOC100290635          0.018   PREDICTED: hypothetical protein XP_002347290 
LOC100287251          0.018   PREDICTED: hypothetical protein XP_002343154 
MUC21                 0.018   mucin 21 
ASPHD1                0.018   aspartate beta-hydroxylase domain containing 1 [Homo...
LOC100292082          0.017   PREDICTED: hypothetical protein XP_002345881 
FLJ31945              0.017   PREDICTED: hypothetical protein 
LOC100293254          0.017   PREDICTED: hypothetical protein 
LOC100289377          0.017   PREDICTED: hypothetical protein 
LOC100287104          0.017   PREDICTED: hypothetical protein XP_002343630 
LOC100289377          0.017   PREDICTED: hypothetical protein XP_002343119 
FLJ31945              0.015   PREDICTED: hypothetical protein 
TMEM88B               0.015   PREDICTED: hypothetical protein LOC643965 
FLJ31945              0.015   PREDICTED: hypothetical protein 
TMEM88B               0.015   PREDICTED: hypothetical protein LOC643965 
ANKRD36               0.015   PREDICTED: ankyrin repeat domain 36 
MAST2                 0.015   microtubule associated serine/threonine kinase 2 [H...
TRIO                  0.015   triple functional domain (PTPRF interacting) 
MAP3K12               0.015   mitogen-activated protein kinase kinase kinase 12 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press