Guide to the Human Genome
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Name: TMEM108 Sequence: fasta or formatted (575aa) NCBI GI: 210147493
Description:

transmembrane protein 108

Not currently referenced in the text

Other entries for this name:
alt mRNA {575aa} transmembrane protein 108
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         55           3
 C cysteine            1.0          6           2
 D aspartate           2.6         15           1
 E glutamate           3.7         21           2
 F phenylalanine       1.9         11           1
 G glycine             7.7         44           3
 H histidine           2.3         13           2
 I isoleucine          3.1         18           1
 K lysine              3.1         18           3
 L leucine             6.4         37           2
 M methionine          1.7         10           1
 N asparagine          3.0         17           2
 P proline            13.0         75           2
 Q glutamine           4.2         24           1
 R arginine            5.4         31           2
 S serine             11.8         68           3
 T threonine          12.2         70           3
 V valine              5.2         30           2
 W tryptophan          1.0          6           1
 Y tyrosine            1.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 108 
TMEM108               1.000   transmembrane protein 108 
MUC2                  0.061   mucin 2 precursor 
LOC100294420          0.058   PREDICTED: similar to mucin 2 
NACA                  0.054   nascent polypeptide-associated complex alpha subuni...
MUC12                 0.047   PREDICTED: mucin 12 
FLJ22184              0.043   PREDICTED: hypothetical protein FLJ22184 
LOC100133756          0.043   PREDICTED: hypothetical protein, partial 
MUC17                 0.043   mucin 17 
MUC12                 0.043   PREDICTED: mucin 12, cell surface associated 
MUC5B                 0.043   mucin 5, subtype B, tracheobronchial 
FLJ22184              0.041   PREDICTED: hypothetical protein LOC80164 
MUC5AC                0.040   mucin 5AC 
MUC7                  0.040   mucin 7, secreted precursor 
MUC7                  0.040   mucin 7, secreted precursor 
MUC7                  0.040   mucin 7, secreted precursor 
PRG4                  0.039   proteoglycan 4 isoform D 
PRG4                  0.039   proteoglycan 4 isoform C 
PRG4                  0.039   proteoglycan 4 isoform B 
PRG4                  0.039   proteoglycan 4 isoform A 
FLJ22184              0.039   PREDICTED: hypothetical protein FLJ22184 
LOC100288540          0.039   PREDICTED: hypothetical protein XP_002342775 
POM121C               0.039   POM121 membrane glycoprotein (rat)-like 
ARHGAP17              0.037   nadrin isoform 1 
MAGEE1                0.035   melanoma antigen family E, 1 
LOC100130716          0.035   PREDICTED: similar to mucin 11 
MUC4                  0.035   mucin 4 isoform a 
LOC284297             0.034   hypothetical protein LOC284297 
LOC100130716          0.034   PREDICTED: similar to Mucin-12 
ATN1                  0.034   atrophin-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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