Guide to the Human Genome
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Name: RAI2 Sequence: fasta or formatted (530aa) NCBI GI: 193788649
Description:

retinoic acid induced 2

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         37           2
 C cysteine            0.8          4           1
 D aspartate           3.6         19           2
 E glutamate           6.8         36           2
 F phenylalanine       3.4         18           2
 G glycine             4.7         25           1
 H histidine           2.3         12           1
 I isoleucine          4.5         24           1
 K lysine              5.3         28           2
 L leucine             9.4         50           2
 M methionine          3.6         19           2
 N asparagine          4.3         23           2
 P proline            13.2         70           3
 Q glutamine           5.8         31           1
 R arginine            1.7          9           1
 S serine             10.8         57           3
 T threonine           4.3         23           2
 V valine              7.0         37           2
 W tryptophan          0.4          2           1
 Y tyrosine            1.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoic acid induced 2 
SOBP                  0.099   sine oculis binding protein homolog 
FLJ22184              0.034   PREDICTED: hypothetical protein FLJ22184 
PRR21                 0.031   proline rich 21 
YLPM1                 0.030   YLP motif containing 1 
MLL2                  0.029   myeloid/lymphoid or mixed-lineage leukemia 2 
WNK2                  0.027   WNK lysine deficient protein kinase 2 
BCORL1                0.027   BCL6 co-repressor-like 1 
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent re...
MLXIPL                0.025   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.025   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.025   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.025   Williams Beuren syndrome chromosome region 14 isofor...
RBM12                 0.024   RNA binding motif protein 12 
RBM12                 0.024   RNA binding motif protein 12 
RNASEN                0.023   ribonuclease III, nuclear isoform 2 
RNASEN                0.023   ribonuclease III, nuclear isoform 1 
ZFHX4                 0.023   zinc finger homeodomain 4 
RBM16                 0.023   RNA-binding motif protein 16 
PRR12                 0.021   proline rich 12 
RAPH1                 0.021   Ras association and pleckstrin homology domains 1 is...
PCDH15                0.020   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.020   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.020   protocadherin 15 isoform CD1-9 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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