Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 124248531
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|124248531 hypothetical protein LOC441476 [Homo sapiens]
(308 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|124248531 hypothetical protein LOC441476 [Homo sapiens] 651 0.0
gi|32171215 CREB regulated transcription coactivator 2 [Homo sap... 37 0.029
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 35 0.064
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 35 0.064
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 35 0.064
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 35 0.064
gi|42544161 forkhead box M1 isoform 3 [Homo sapiens] 35 0.11
gi|42544165 forkhead box M1 isoform 2 [Homo sapiens] 35 0.11
gi|42544167 forkhead box M1 isoform 1 [Homo sapiens] 35 0.11
gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens] 34 0.14
gi|116292180 outer dense fiber of sperm tails 3B [Homo sapiens] 34 0.14
gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo sapi... 34 0.19
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens] 34 0.19
gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sa... 33 0.24
gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sap... 33 0.24
gi|239742272 PREDICTED: hypothetical protein XP_002342469 isofor... 33 0.32
gi|239742270 PREDICTED: hypothetical protein XP_002342468 isofor... 33 0.32
gi|118640873 X-box binding protein 1 isoform XBP1(S) [Homo sapiens] 33 0.42
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.42
gi|169212085 PREDICTED: similar to poly(A) binding protein inter... 32 0.54
gi|239752553 PREDICTED: similar to poly(A) binding protein inter... 32 0.54
gi|89041275 PREDICTED: similar to poly(A) binding protein intera... 32 0.54
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 0.54
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 0.54
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 0.54
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 32 0.54
gi|27436887 pre-B-cell leukemia homeobox 2 [Homo sapiens] 32 0.54
gi|23510413 sorting nexin 26 [Homo sapiens] 32 0.54
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 32 0.54
gi|67551265 transcription factor ELYS [Homo sapiens] 32 0.54
>gi|124248531 hypothetical protein LOC441476 [Homo sapiens]
Length = 308
Score = 651 bits (1679), Expect = 0.0
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MMNSDQKAVKFLANFYINGGKHWTHGHLRQTQPEPTQPKASVLLLGPEPGMAWDETQPPK 60
MMNSDQKAVKFLANFYINGGKHWTHGHLRQTQPEPTQPKASVLLLGPEPGMAWDETQPPK
Sbjct: 1 MMNSDQKAVKFLANFYINGGKHWTHGHLRQTQPEPTQPKASVLLLGPEPGMAWDETQPPK 60
Query: 61 MKEIPVGLRLQTGTPQESLPTYTQTLRELLLEQRPLITADLEVPSPTRYQVPSPSVRESS 120
MKEIPVGLRLQTGTPQESLPTYTQTLRELLLEQRPLITADLEVPSPTRYQVPSPSVRESS
Sbjct: 61 MKEIPVGLRLQTGTPQESLPTYTQTLRELLLEQRPLITADLEVPSPTRYQVPSPSVRESS 120
Query: 121 PHPHYSIGCKHQGREGGGRRAWQTLWFQSESPFTQKADFDQEQKWPSPAHYQLLSRPAFP 180
PHPHYSIGCKHQGREGGGRRAWQTLWFQSESPFTQKADFDQEQKWPSPAHYQLLSRPAFP
Sbjct: 121 PHPHYSIGCKHQGREGGGRRAWQTLWFQSESPFTQKADFDQEQKWPSPAHYQLLSRPAFP 180
Query: 181 AFSFRGCHSASKTPEGHTHLGLPGARGLGLRVQPQSLLQASLQAPGKRCPGPNTYNILPG 240
AFSFRGCHSASKTPEGHTHLGLPGARGLGLRVQPQSLLQASLQAPGKRCPGPNTYNILPG
Sbjct: 181 AFSFRGCHSASKTPEGHTHLGLPGARGLGLRVQPQSLLQASLQAPGKRCPGPNTYNILPG 240
Query: 241 SRLQSPRSPAFSMSRSPAFTSWLSTSRTPGPAAYHVEDCNSRFPSAPGVVIQGVRRPKRH 300
SRLQSPRSPAFSMSRSPAFTSWLSTSRTPGPAAYHVEDCNSRFPSAPGVVIQGVRRPKRH
Sbjct: 241 SRLQSPRSPAFSMSRSPAFTSWLSTSRTPGPAAYHVEDCNSRFPSAPGVVIQGVRRPKRH 300
Query: 301 DTGPFCTL 308
DTGPFCTL
Sbjct: 301 DTGPFCTL 308
>gi|32171215 CREB regulated transcription coactivator 2 [Homo
sapiens]
Length = 693
Score = 36.6 bits (83), Expect = 0.029
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 23/115 (20%)
Query: 178 AFPAFSFRGCHSASKTPEGHTHLGLPGARGLGLRVQPQSL-----------------LQA 220
A+P+ S G +S S THLG+ GLG L LQA
Sbjct: 297 AYPSLS--GGNSTSNLTHTMTHLGISRGMGLGPGYDAPGLHSPLSHPSLQSSLSNPNLQA 354
Query: 221 SLQAPGKRCPGPNTYNILPGSRLQSPRSPAFSMSR----SPAFTSWLSTSRTPGP 271
SL +P + G +++ LP S L P S+ +PA +S S+S T P
Sbjct: 355 SLSSPQPQLQGSHSHPSLPASSLARHVLPTTSLGHPSLSAPALSSSSSSSSTSSP 409
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 35.4 bits (80), Expect = 0.064
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKE-IPVGLRLQTGTPQESLPTYTQTLRELL 90
+P PT PK EP ++ P KE P + TP+E PT T+
Sbjct: 215 EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTK------ 268
Query: 91 LEQRPLITADLEVPSPTRYQVPSPSVRESSP 121
P T E P+PT + P+P+ +S+P
Sbjct: 269 ---EPAPTTPKE-PAPTTTKEPAPTTTKSAP 295
Score = 33.1 bits (74), Expect = 0.32
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKE-IPVGLRLQTGT-PQESLPTYTQTLREL 89
+P PT PK EP E P KE P + T P+E PT +
Sbjct: 316 EPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPK----- 370
Query: 90 LLEQRPLITADLEVPSPTRYQVPSPSVRESSP 121
E P T + PSPT + P+P+ +S+P
Sbjct: 371 --EPAPTTTKE---PSPTTPKEPAPTTTKSAP 397
Score = 29.3 bits (64), Expect = 4.6
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKEIPVGLRLQTGTPQESLPTYTQTLRELLL 91
+P PT PK EP P K P TP+E PT T
Sbjct: 269 EPAPTTPKEPAPTTTKEPA-------PTTTKSAPT-------TPKEPAPT-TPKKPAPTT 313
Query: 92 EQRPLITADLEVPSPTRYQVPSPSVRESSP 121
+ P T E P+PT + P+P+ +E +P
Sbjct: 314 PKEPAPTTPKE-PTPTTPKEPAPTTKEPAP 342
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 35.4 bits (80), Expect = 0.064
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKE-IPVGLRLQTGTPQESLPTYTQTLRELL 90
+P PT PK EP ++ P KE P + TP+E PT T+
Sbjct: 256 EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTK------ 309
Query: 91 LEQRPLITADLEVPSPTRYQVPSPSVRESSP 121
P T E P+PT + P+P+ +S+P
Sbjct: 310 ---EPAPTTPKE-PAPTTTKEPAPTTTKSAP 336
Score = 33.1 bits (74), Expect = 0.32
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKE-IPVGLRLQTGT-PQESLPTYTQTLREL 89
+P PT PK EP E P KE P + T P+E PT +
Sbjct: 357 EPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPK----- 411
Query: 90 LLEQRPLITADLEVPSPTRYQVPSPSVRESSP 121
E P T + PSPT + P+P+ +S+P
Sbjct: 412 --EPAPTTTKE---PSPTTPKEPAPTTTKSAP 438
Score = 29.3 bits (64), Expect = 4.6
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKEIPVGLRLQTGTPQESLPTYTQTLRELLL 91
+P PT PK EP P K P TP+E PT T
Sbjct: 310 EPAPTTPKEPAPTTTKEPA-------PTTTKSAPT-------TPKEPAPT-TPKKPAPTT 354
Query: 92 EQRPLITADLEVPSPTRYQVPSPSVRESSP 121
+ P T E P+PT + P+P+ +E +P
Sbjct: 355 PKEPAPTTPKE-PTPTTPKEPAPTTKEPAP 383
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 35.4 bits (80), Expect = 0.064
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKE-IPVGLRLQTGTPQESLPTYTQTLRELL 90
+P PT PK EP ++ P KE P + TP+E PT T+
Sbjct: 308 EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTK------ 361
Query: 91 LEQRPLITADLEVPSPTRYQVPSPSVRESSP 121
P T E P+PT + P+P+ +S+P
Sbjct: 362 ---EPAPTTPKE-PAPTTTKEPAPTTTKSAP 388
Score = 33.1 bits (74), Expect = 0.32
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKE-IPVGLRLQTGT-PQESLPTYTQTLREL 89
+P PT PK EP E P KE P + T P+E PT +
Sbjct: 409 EPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPK----- 463
Query: 90 LLEQRPLITADLEVPSPTRYQVPSPSVRESSP 121
E P T + PSPT + P+P+ +S+P
Sbjct: 464 --EPAPTTTKE---PSPTTPKEPAPTTTKSAP 490
Score = 29.3 bits (64), Expect = 4.6
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKEIPVGLRLQTGTPQESLPTYTQTLRELLL 91
+P PT PK EP P K P TP+E PT T
Sbjct: 362 EPAPTTPKEPAPTTTKEPA-------PTTTKSAPT-------TPKEPAPT-TPKKPAPTT 406
Query: 92 EQRPLITADLEVPSPTRYQVPSPSVRESSP 121
+ P T E P+PT + P+P+ +E +P
Sbjct: 407 PKEPAPTTPKE-PTPTTPKEPAPTTKEPAP 435
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 35.4 bits (80), Expect = 0.064
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKE-IPVGLRLQTGTPQESLPTYTQTLRELL 90
+P PT PK EP ++ P KE P + TP+E PT T+
Sbjct: 349 EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTTPKEPAPTTTK------ 402
Query: 91 LEQRPLITADLEVPSPTRYQVPSPSVRESSP 121
P T E P+PT + P+P+ +S+P
Sbjct: 403 ---EPAPTTPKE-PAPTTTKEPAPTTTKSAP 429
Score = 33.1 bits (74), Expect = 0.32
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKE-IPVGLRLQTGT-PQESLPTYTQTLREL 89
+P PT PK EP E P KE P + T P+E PT +
Sbjct: 450 EPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPK----- 504
Query: 90 LLEQRPLITADLEVPSPTRYQVPSPSVRESSP 121
E P T + PSPT + P+P+ +S+P
Sbjct: 505 --EPAPTTTKE---PSPTTPKEPAPTTTKSAP 531
Score = 29.3 bits (64), Expect = 4.6
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 32 QPEPTQPKASVLLLGPEPGMAWDETQPPKMKEIPVGLRLQTGTPQESLPTYTQTLRELLL 91
+P PT PK EP P K P TP+E PT T
Sbjct: 403 EPAPTTPKEPAPTTTKEPA-------PTTTKSAPT-------TPKEPAPT-TPKKPAPTT 447
Query: 92 EQRPLITADLEVPSPTRYQVPSPSVRESSP 121
+ P T E P+PT + P+P+ +E +P
Sbjct: 448 PKEPAPTTPKE-PTPTTPKEPAPTTKEPAP 476
>gi|42544161 forkhead box M1 isoform 3 [Homo sapiens]
Length = 748
Score = 34.7 bits (78), Expect = 0.11
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 24/116 (20%)
Query: 28 LRQTQPEPTQPKASVLLLGPEPGMAWDETQPPKMKEI-----------------PVGLRL 70
+++T P + P SVL PE +W T P K+ + P+GL
Sbjct: 587 IKETLPISSTPSKSVLPRTPE---SWRLTPPAKVGGLDFSPVQTSQGASDPLPDPLGLMD 643
Query: 71 QTGTPQESLPTYTQTLRELLLEQRPLITADLEVPSPTRYQVPSPSVRESSPHPHYS 126
+ TP +S P R L E LI+ SP+ VP P SP P S
Sbjct: 644 LSTTPLQSAPPLESPQRLLSSEPLDLISVPFGNSSPSDIDVPKP----GSPEPQVS 695
>gi|42544165 forkhead box M1 isoform 2 [Homo sapiens]
Length = 763
Score = 34.7 bits (78), Expect = 0.11
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 24/116 (20%)
Query: 28 LRQTQPEPTQPKASVLLLGPEPGMAWDETQPPKMKEI-----------------PVGLRL 70
+++T P + P SVL PE +W T P K+ + P+GL
Sbjct: 602 IKETLPISSTPSKSVLPRTPE---SWRLTPPAKVGGLDFSPVQTSQGASDPLPDPLGLMD 658
Query: 71 QTGTPQESLPTYTQTLRELLLEQRPLITADLEVPSPTRYQVPSPSVRESSPHPHYS 126
+ TP +S P R L E LI+ SP+ VP P SP P S
Sbjct: 659 LSTTPLQSAPPLESPQRLLSSEPLDLISVPFGNSSPSDIDVPKP----GSPEPQVS 710
>gi|42544167 forkhead box M1 isoform 1 [Homo sapiens]
Length = 801
Score = 34.7 bits (78), Expect = 0.11
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 24/116 (20%)
Query: 28 LRQTQPEPTQPKASVLLLGPEPGMAWDETQPPKMKEI-----------------PVGLRL 70
+++T P + P SVL PE +W T P K+ + P+GL
Sbjct: 640 IKETLPISSTPSKSVLPRTPE---SWRLTPPAKVGGLDFSPVQTSQGASDPLPDPLGLMD 696
Query: 71 QTGTPQESLPTYTQTLRELLLEQRPLITADLEVPSPTRYQVPSPSVRESSPHPHYS 126
+ TP +S P R L E LI+ SP+ VP P SP P S
Sbjct: 697 LSTTPLQSAPPLESPQRLLSSEPLDLISVPFGNSSPSDIDVPKP----GSPEPQVS 748
>gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens]
Length = 617
Score = 34.3 bits (77), Expect = 0.14
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 175 SRPAFPAFSFRGCHSASKTPEGHTHLGL-PGARGLGLRVQPQSLLQASLQAP---GKRCP 230
SRP A S+ +AS P HT P A RV + ++ S+ P P
Sbjct: 251 SRPQ--ASSYSPAVAASSAPATHTSYSEGPAAPAPKPRVVTTASIRPSVYQPVPASTYSP 308
Query: 231 GPNTYNILPGSRLQSPRSPAFSMSRSPAFTSWLSTSRTPGPAAYHVEDCNSRFPSAPGVV 290
P N P SP +PA++ S +PA+T + TP PA + + AP V
Sbjct: 309 SPGA-NYSPTPYTPSP-APAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAPSVA 366
Query: 291 IQG 293
G
Sbjct: 367 YSG 369
>gi|116292180 outer dense fiber of sperm tails 3B [Homo sapiens]
Length = 253
Score = 34.3 bits (77), Expect = 0.14
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 20/98 (20%)
Query: 191 SKTPEGHTHLGLPGARGLGLRVQPQSLLQASLQAPG-----KRCPGPNTYNILPGSRLQS 245
S P +T L G R +G P + A + PGP Y ++
Sbjct: 138 SPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPCAYQVV------- 190
Query: 246 PRSPAFSMSRSPAFTSWLSTS------RTPGPAAYHVE 277
SP SR+P FT TS R PGPAAY+V+
Sbjct: 191 --SPGVYKSRAPQFTILARTSLPQDNTRKPGPAAYNVD 226
>gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo
sapiens]
Length = 289
Score = 33.9 bits (76), Expect = 0.19
Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 17/126 (13%)
Query: 186 GCHSASKTPEGHTHLGLPGARGLGLRVQPQSLLQASLQAPGKRCPGPNTYNILP--GSRL 243
G +S K P P A LG R+ P L S P PN Y + P GS++
Sbjct: 125 GAYSPEKVPPVRHRT--PPAFTLGCRL-PLKPLDTS-------APAPNAYTMPPLWGSQI 174
Query: 244 -QSPRSPAFSM-SRSPAFTSWLSTSRTPGPAAYHVEDCNSRFPSAPGVVIQG---VRRPK 298
P SP++++ R+P + PGP Y D N+ P + G RP
Sbjct: 175 FTKPSSPSYTVVGRTPPARPPQDPAEIPGPGQYDSPDANTYRQRLPAFTMLGRPRAPRPL 234
Query: 299 RHDTGP 304
GP
Sbjct: 235 EETPGP 240
>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
Length = 727
Score = 33.9 bits (76), Expect = 0.19
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 177 PAFPAFSFRGCHSASKTPEGHTHLGL-PGARGLGLRVQPQSLLQASLQAP---GKRCPGP 232
P A S+ +AS P HT P A RV + ++ S+ P P P
Sbjct: 361 PRPQASSYSPAVAASSAPATHTSYSEGPAAPAPKPRVVTTASIRPSVYQPVPASTYSPSP 420
Query: 233 NTYNILPGSRLQSPRSPAFSMSRSPAFTSWLSTSRTPGPAAYHVEDCNSRFPSAPGVVIQ 292
N P SP +PA++ S +PA+T + TP PA + + AP V
Sbjct: 421 GA-NYSPTPYTPSP-APAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAPSVAYS 478
Query: 293 G 293
G
Sbjct: 479 G 479
>gi|197276600 microtubule-associated protein 4 isoform 4 [Homo
sapiens]
Length = 1135
Score = 33.5 bits (75), Expect = 0.24
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 34 EPTQPKASVLLLGPEPGMAWDETQPPKMKEIPVGLRLQTGTPQESLPTYTQTLRELLLEQ 93
EP QP A L L E MA +E P + EI +GL+ P S T +++ L
Sbjct: 211 EPPQPTAVPLELAKEIEMASEERPPAQALEIMMGLKTTDMAP--SKETEMALAKDMALAT 268
Query: 94 RPLITADLEVPSPTRYQV 111
+ + ++ SPT+ V
Sbjct: 269 KTEVALAKDMESPTKLDV 286
>gi|47519639 microtubule-associated protein 4 isoform 1 [Homo
sapiens]
Length = 1152
Score = 33.5 bits (75), Expect = 0.24
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 34 EPTQPKASVLLLGPEPGMAWDETQPPKMKEIPVGLRLQTGTPQESLPTYTQTLRELLLEQ 93
EP QP A L L E MA +E P + EI +GL+ P S T +++ L
Sbjct: 211 EPPQPTAVPLELAKEIEMASEERPPAQALEIMMGLKTTDMAP--SKETEMALAKDMALAT 268
Query: 94 RPLITADLEVPSPTRYQV 111
+ + ++ SPT+ V
Sbjct: 269 KTEVALAKDMESPTKLDV 286
>gi|239742272 PREDICTED: hypothetical protein XP_002342469 isoform 2
[Homo sapiens]
Length = 464
Score = 33.1 bits (74), Expect = 0.32
Identities = 42/159 (26%), Positives = 58/159 (36%), Gaps = 22/159 (13%)
Query: 111 VPSPSVRESSPHPHYSIGCKHQGREGGGRRAWQTLWFQSESPFTQKADFDQEQKWPSPAH 170
+P P+VR P P + H EGG R Q Q + K P+
Sbjct: 210 IPQPAVRHQGPEPLLVVKPTHSSPEGGCREVPQAA--SKTHGLLQAISPQAQDKRPA--- 264
Query: 171 YQLLSRPAFPAFSFRGCHSASKTPEGHTHLGLPGARGLGLRVQPQSLLQASLQAPGKRCP 230
+ S+P PA HS LG + G G + Q+ +QA L P K
Sbjct: 265 --VTSQPCPPA----ATHSLG--------LGSNLSFGPGAKRPAQAPIQACLNFPKKPRL 310
Query: 231 GPNTYNILPGSRLQSPRSPAFSMSRSPAFTSWLSTSRTP 269
GP +P S +Q A + P T+ L S +P
Sbjct: 311 GPFQ---IPESAIQGGELGAPEYLQPPPATTELGPSTSP 346
>gi|239742270 PREDICTED: hypothetical protein XP_002342468 isoform 1
[Homo sapiens]
Length = 464
Score = 33.1 bits (74), Expect = 0.32
Identities = 42/159 (26%), Positives = 58/159 (36%), Gaps = 22/159 (13%)
Query: 111 VPSPSVRESSPHPHYSIGCKHQGREGGGRRAWQTLWFQSESPFTQKADFDQEQKWPSPAH 170
+P P+VR P P + H EGG R Q Q + K P+
Sbjct: 210 IPQPAVRHQGPEPLLVVKPTHSSPEGGCREVPQAA--SKTHGLLQAISPQAQDKRPA--- 264
Query: 171 YQLLSRPAFPAFSFRGCHSASKTPEGHTHLGLPGARGLGLRVQPQSLLQASLQAPGKRCP 230
+ S+P PA HS LG + G G + Q+ +QA L P K
Sbjct: 265 --VTSQPCPPA----ATHSLG--------LGSNLSFGPGAKRPAQAPIQACLNFPKKPRL 310
Query: 231 GPNTYNILPGSRLQSPRSPAFSMSRSPAFTSWLSTSRTP 269
GP +P S +Q A + P T+ L S +P
Sbjct: 311 GPFQ---IPESAIQGGELGAPEYLQPPPATTELGPSTSP 346
>gi|118640873 X-box binding protein 1 isoform XBP1(S) [Homo sapiens]
Length = 376
Score = 32.7 bits (73), Expect = 0.42
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 47 PEPGMAWD--ETQPPKMKEIPVGLRLQTGTPQESLPTYTQTLRELLLEQRPLITADLEVP 104
PEP + E P +P L L GT L + +R + +PL+ LE+P
Sbjct: 213 PEPASLEELPEVYPEGPSSLPASLSLSVGTSSAKLEAINELIRFDHIYTKPLV---LEIP 269
Query: 105 SPTRYQV-------PSPSVRESSPHPHYSIGCKHQ 132
S T Q +P + HP + + K +
Sbjct: 270 SETESQANVVVKIEEAPLSPSENDHPEFIVSVKEE 304
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.42
Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 188 HSASKTPEGHTHLGLP---GARGLGLRVQPQSLLQASLQAPGKRCPGP---NTYNILPGS 241
H + PE H + A LG P S+ A L A + P P + P +
Sbjct: 2167 HQRTSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAA 2226
Query: 242 RLQS--PRSPAFSMS----RSPAFTSW--LSTSRTPGPAAYH-------------VEDCN 280
L S P + A +M+ R+PA + L+ SRTP AA V +
Sbjct: 2227 NLASRIPAASAAAMNLASARTPAIPTAVNLADSRTPAAAAAMNLASPRTAVAPSAVNLAD 2286
Query: 281 SRFPSAPGVVIQGVRRP 297
R P+AP V + G R P
Sbjct: 2287 PRTPTAPAVNLAGARTP 2303
>gi|169212085 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 516
Score = 32.3 bits (72), Expect = 0.54
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 25/124 (20%)
Query: 26 GHLRQTQPEPTQPKASVLLLGPEPGMAWDETQPPKMKEIPVGLRLQTGTPQESLPTYTQT 85
G + + +P QPKA L P + T PP + V Q +P +LP T++
Sbjct: 73 GPAERARHQPPQPKAPGFL--QPPPLRQPRTTPPPGAQCEVPASPQRPSPPGALPEQTRS 130
Query: 86 LRELLLEQ-------------------RPLITADLEVPSPTRYQVPSPSVRESSPHPHYS 126
LR Q P++ + L V +P Y PS SS Y
Sbjct: 131 LRAPPSSQDKIPQQNSESAMAKPQVVVAPVLRSKLSVNAPEFY----PSGYSSSYTESYE 186
Query: 127 IGCK 130
+GC+
Sbjct: 187 VGCE 190
>gi|239752553 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 457
Score = 32.3 bits (72), Expect = 0.54
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 25/124 (20%)
Query: 26 GHLRQTQPEPTQPKASVLLLGPEPGMAWDETQPPKMKEIPVGLRLQTGTPQESLPTYTQT 85
G + + +P QPKA L P + T PP + V Q +P +LP T++
Sbjct: 14 GPAERARHQPPQPKAPGFL--QPPPLRQPRTTPPPGAQCEVPASPQRPSPPGALPEQTRS 71
Query: 86 LRELLLEQ-------------------RPLITADLEVPSPTRYQVPSPSVRESSPHPHYS 126
LR Q P++ + L V +P Y PS SS Y
Sbjct: 72 LRAPPSSQDKIPQQNSESAMAKPQVVVAPVLRSKLSVNAPEFY----PSGYSSSYTESYE 127
Query: 127 IGCK 130
+GC+
Sbjct: 128 VGCE 131
>gi|89041275 PREDICTED: similar to poly(A) binding protein
interacting protein 1 [Homo sapiens]
Length = 488
Score = 32.3 bits (72), Expect = 0.54
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 25/124 (20%)
Query: 26 GHLRQTQPEPTQPKASVLLLGPEPGMAWDETQPPKMKEIPVGLRLQTGTPQESLPTYTQT 85
G + + +P QPKA L P + T PP + V Q +P +LP T++
Sbjct: 45 GPAERARHQPPQPKAPGFL--QPPPLRQPRTTPPPGAQCEVPASPQRPSPPGALPEQTRS 102
Query: 86 LRELLLEQ-------------------RPLITADLEVPSPTRYQVPSPSVRESSPHPHYS 126
LR Q P++ + L V +P Y PS SS Y
Sbjct: 103 LRAPPSSQDKIPQQNSESAMAKPQVVVAPVLRSKLSVNAPEFY----PSGYSSSYTESYE 158
Query: 127 IGCK 130
+GC+
Sbjct: 159 VGCE 162
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 32.3 bits (72), Expect = 0.54
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 46 GPEPGMAWDETQPPKMKEIPVGLRLQTGTPQES-----LPTYTQTLRELLLEQRPLITAD 100
GP+P + QPP + PV L QT P ES P + + E Q P +T
Sbjct: 188 GPQPQHSQPPPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPG 247
Query: 101 LEVPSPTRYQVPSPSVRESSP-HP 123
P+P P+P+ ++P HP
Sbjct: 248 ---PAPAG---PTPAPETNAPNHP 265
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 32.3 bits (72), Expect = 0.54
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 46 GPEPGMAWDETQPPKMKEIPVGLRLQTGTPQES-----LPTYTQTLRELLLEQRPLITAD 100
GP+P + QPP + PV L QT P ES P + + E Q P +T
Sbjct: 188 GPQPQHSQPPPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPG 247
Query: 101 LEVPSPTRYQVPSPSVRESSP-HP 123
P+P P+P+ ++P HP
Sbjct: 248 ---PAPAG---PTPAPETNAPNHP 265
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 32.3 bits (72), Expect = 0.54
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 46 GPEPGMAWDETQPPKMKEIPVGLRLQTGTPQES-----LPTYTQTLRELLLEQRPLITAD 100
GP+P + QPP + PV L QT P ES P + + E Q P +T
Sbjct: 188 GPQPQHSQPPPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPG 247
Query: 101 LEVPSPTRYQVPSPSVRESSP-HP 123
P+P P+P+ ++P HP
Sbjct: 248 ---PAPAG---PTPAPETNAPNHP 265
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 32.3 bits (72), Expect = 0.54
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 46 GPEPGMAWDETQPPKMKEIPVGLRLQTGTPQES-----LPTYTQTLRELLLEQRPLITAD 100
GP+P + QPP + PV L QT P ES P + + E Q P +T
Sbjct: 194 GPQPQHSQPPPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPG 253
Query: 101 LEVPSPTRYQVPSPSVRESSP-HP 123
P+P P+P+ ++P HP
Sbjct: 254 ---PAPAG---PTPAPETNAPNHP 271
>gi|27436887 pre-B-cell leukemia homeobox 2 [Homo sapiens]
Length = 430
Score = 32.3 bits (72), Expect = 0.54
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 175 SRPAFPAFSFRGCHSASKTPEGHTHLGLPGARGLGLRVQPQSLLQASLQAPGKRCPGPNT 234
S P P+ + G S + + G LG+PG G L+ S+ GP
Sbjct: 333 SSPTPPSSAGSG-GSFNLSGSGDMFLGMPGLNGDSYSASQVESLRHSM--------GPGG 383
Query: 235 Y-NILPGSRLQSPRSPAFSMSRSPAFTSWLSTSRTPGPAAYHVEDCN 280
Y + L G ++ SPR + S A T TS T GP + H + N
Sbjct: 384 YGDNLGGGQMYSPREMRANGSWQEAVTPSSVTSPTEGPGSVHSDTSN 430
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 32.3 bits (72), Expect = 0.54
Identities = 56/220 (25%), Positives = 76/220 (34%), Gaps = 42/220 (19%)
Query: 78 SLPTYTQTLRELLLEQRPLITADLEVPSPTRYQVPSPSVRESSPHP-------------- 123
S+P+ T R + L VP P Y + PS + SSP P
Sbjct: 861 SVPSQVPTPGFFSPAPRECLPPFLGVPKPGLYPLGPPSFQPSSPAPVWRSSLGPPAPLDR 920
Query: 124 ----HYSIGCKHQGREGGGRRAWQTLWFQSESPFTQKADFDQEQKWPSPAHYQ---LLSR 176
+Y IG G R+W F+S P A + + P P H LLS
Sbjct: 921 GENLYYEIGASEGSPYSGPTRSWSP--FRSMPPDRLNASYGMLGQSP-PLHRSPDFLLSY 977
Query: 177 PAFPAFSFRGCHSASKTPEGHTHLGLPGARGLGLRVQPQSLLQASLQAPGKRCPGP-NTY 235
P P+ C HLG + R P L +L A G R P P ++
Sbjct: 978 PPAPS-----CFPPD-------HLGYSAPQHPARRPTPPEPLYVNL-ALGPRGPSPASSS 1024
Query: 236 NILPGSRLQSPRSPAFSMSRSP--AFTSW--LSTSRTPGP 271
+ P + +S P + R P W + R PGP
Sbjct: 1025 SSSPPAHPRSRSDPGPPVPRLPQKQRAPWGPRTPHRVPGP 1064
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 32.3 bits (72), Expect = 0.54
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 34 EPTQPKASVLLL--GPEPGMAWDETQPPKMKEIPVGLRLQTGTPQESLPTYTQTLRELLL 91
E TQP A V+L GP+PG E P +++ + L Q L ELLL
Sbjct: 177 EVTQPGAGVVLALSGPDPG----ELAPAELEMLSRSLMGTLSKLARERDLGAQRLAELLL 232
Query: 92 EQRPLITADLEVPSPTRYQVPSPS 115
E+ PL L +P+R PS
Sbjct: 233 EREPLC---LRPEAPSRAPAEGPS 253
>gi|67551265 transcription factor ELYS [Homo sapiens]
Length = 2266
Score = 32.3 bits (72), Expect = 0.54
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 26/189 (13%)
Query: 87 RELLLEQRPLITADLEVPSPTRYQVPSPSVRESSPHPHYSIGCKHQGREGGGRRAWQTLW 146
+E + P ++ +E PSP Y +P+P + E+ S + R L
Sbjct: 1069 KEPINSTTPFNSSKIEEPSPIVYSLPAPELPEAFFGTPISKASQKISR-------LLDLV 1121
Query: 147 FQSESPFTQKADFDQEQKWPSPAHYQLLSRPAFPAFSFRGCHSA-SKTPEGH---THLGL 202
Q +Q ++F Q+ SP + L+SR + +G A S+ E H T L +
Sbjct: 1122 VQPVPRPSQCSEFIQQSSMKSPLY--LVSRSLPSSSQLKGSPQAISRASELHLLETPLVV 1179
Query: 203 PGARGLGLRV--------QPQSLLQASLQAPGKRCPGPNTYNILPGSRLQSPRSPAFSMS 254
A+ L + V PQS+L+++L++ P P+ PG Q + S
Sbjct: 1180 KKAKSLAMSVTTSGFSEFTPQSILRSTLRSTPLASPSPS-----PGRSPQRLKETRISFV 1234
Query: 255 RSPAFTSWL 263
W+
Sbjct: 1235 EEDVHPKWI 1243
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,402,364
Number of Sequences: 37866
Number of extensions: 1009901
Number of successful extensions: 3257
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 3148
Number of HSP's gapped (non-prelim): 226
length of query: 308
length of database: 18,247,518
effective HSP length: 102
effective length of query: 206
effective length of database: 14,385,186
effective search space: 2963348316
effective search space used: 2963348316
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.