Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PBX2 Sequence: fasta or formatted (430aa) NCBI GI: 27436887
Description:

pre-B-cell leukemia homeobox 2

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         31           9
 C cysteine            1.2          5           1
 D aspartate           3.5         15           1
 E glutamate           7.4         32           3
 F phenylalanine       2.3         10           1
 G glycine            12.8         55           3
 H histidine           2.6         11           1
 I isoleucine          4.0         17           2
 K lysine              5.1         22           2
 L leucine             6.7         29           2
 M methionine          3.5         15           1
 N asparagine          4.0         17           1
 P proline             6.5         28           4
 Q glutamine           4.7         20           2
 R arginine            5.8         25           2
 S serine             11.2         48           2
 T threonine           4.0         17           2
 V valine              4.7         20           1
 W tryptophan          0.5          2           1
 Y tyrosine            2.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pre-B-cell leukemia homeobox 2 
PBX1                  0.722   pre-B-cell leukemia homeobox 1 
PBX3                  0.718   pre-B-cell leukemia homeobox 3 isoform 1 
PBX3                  0.634   pre-B-cell leukemia homeobox 3 isoform 2 
PBX4                  0.530   pre-B-cell leukemia homeobox 4 
MEIS3                 0.051   Meis1, myeloid ecotropic viral integration site 1 ho...
MEIS2                 0.049   Meis homeobox 2 isoform c 
MEIS2                 0.046   Meis homeobox 2 isoform g 
MEIS2                 0.046   Meis homeobox 2 isoform a 
MEIS1                 0.045   Meis homeobox 1 
MEIS2                 0.045   Meis homeobox 2 isoform h 
MEIS2                 0.045   Meis homeobox 2 isoform d 
MEIS2                 0.045   Meis homeobox 2 isoform b 
MEIS2                 0.045   Meis homeobox 2 isoform f 
SIX3                  0.043   sine oculis homeobox homolog 3 
PKNOX2                0.043   PBX/knotted 1 homeobox 2 
PKNOX1                0.040   PBX/knotted 1 homeobox 1 
TGIF2LX               0.038   TGFB-induced factor homeobox 2-like, X-linked 
SIX2                  0.036   SIX homeobox 2 
SIX1                  0.033   SIX homeobox 1 
TGIF1                 0.033   TG-interacting factor isoform a 
TGIF1                 0.033   TG-interacting factor isoform c 
TGIF1                 0.033   TG-interacting factor isoform d 
TGIF1                 0.033   TG-interacting factor isoform d 
TGIF1                 0.033   TG-interacting factor isoform d 
TGIF1                 0.033   TG-interacting factor isoform d 
TGIF1                 0.033   TG-interacting factor isoform c 
TGIF1                 0.033   TG-interacting factor isoform b 
TGIF2LY               0.032   TGFB-induced factor homeobox 2-like, Y-linked 
IRX4                  0.032   iroquois homeobox 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press