Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BAT3 Sequence: fasta or formatted (1126aa) NCBI GI: 18375630
Description:

HLA-B associated transcript-3 isoform b

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [1132aa] HLA-B associated transcript-3 isoform a
alt mRNA [1126aa] HLA-B associated transcript-3 isoform b
alt mRNA [1126aa] HLA-B associated transcript-3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4        106           3
 C cysteine            0.7          8           1
 D aspartate           2.7         30           2
 E glutamate           6.4         72           2
 F phenylalanine       2.3         26           2
 G glycine             9.1        103           3
 H histidine           2.4         27           1
 I isoleucine          2.9         33           2
 K lysine              1.2         13           2
 L leucine             8.6         97           3
 M methionine          2.9         33           2
 N asparagine          3.2         36           3
 P proline            13.5        152          12
 Q glutamine           7.3         82           2
 R arginine            5.2         59           2
 S serine              8.2         92           2
 T threonine           5.9         66           2
 V valine              6.6         74           2
 W tryptophan          0.3          3           1
 Y tyrosine            1.2         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HLA-B associated transcript-3 isoform b 
BAT3                  1.000   HLA-B associated transcript-3 isoform b 
BAT3                  1.000   HLA-B associated transcript-3 isoform b 
BAT3                  0.997   HLA-B associated transcript-3 isoform a 
PRB2                  0.027   proline-rich protein BstNI subfamily 2 
PRB1                  0.026   proline-rich protein BstNI subfamily 1 isoform 1 pre...
NACA                  0.026   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
MBD6                  0.025   methyl-CpG binding domain protein 6 
FLJ22184              0.024   PREDICTED: hypothetical protein FLJ22184 
RAPH1                 0.024   Ras association and pleckstrin homology domains 1 is...
WIPF3                 0.024   WAS/WASL interacting protein family, member 3 [Homo...
SF1                   0.024   splicing factor 1 isoform 2 
SF1                   0.024   splicing factor 1 isoform 1 
FLJ22184              0.024   PREDICTED: hypothetical protein LOC80164 
TAF4                  0.024   TBP-associated factor 4 
PRB3                  0.023   proline-rich protein BstNI subfamily 3 precursor [H...
FMN2                  0.022   formin 2 
COL15A1               0.022   alpha 1 type XV collagen precursor 
COL17A1               0.021   alpha 1 type XVII collagen 
PRR12                 0.021   proline rich 12 
GLTSCR1               0.020   glioma tumor suppressor candidate region gene 1 [Ho...
SFRS15                0.020   splicing factor, arginine/serine-rich 15 isoform 3 ...
COL1A2                0.020   alpha 2 type I collagen 
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press