Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MAP4 Sequence: fasta or formatted (1152aa) NCBI GI: 47519639
Description:

microtubule-associated protein 4 isoform 1

Referenced in:

Tubulins and Microtubules

Other entries for this name:
alt prot [1135aa] microtubule-associated protein 4 isoform 4
alt prot [817aa] microtubule-associated protein 4 isoform 5
alt prot [887aa] microtubule-associated protein 4 isoform 2
alt prot [99aa] microtubule-associated protein 4 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5        121           3
 C cysteine            0.8          9           1
 D aspartate           5.4         62           3
 E glutamate           8.4         97           2
 F phenylalanine       1.0         12           1
 G glycine             5.6         64           3
 H histidine           0.9         10           1
 I isoleucine          3.6         42           2
 K lysine              9.8        113           3
 L leucine             6.9         79           2
 M methionine          2.6         30           2
 N asparagine          2.7         31           2
 P proline            10.7        123           3
 Q glutamine           3.1         36           1
 R arginine            2.0         23           1
 S serine              9.9        114           2
 T threonine           8.8        101           3
 V valine              6.6         76           2
 W tryptophan          0.3          3           1
 Y tyrosine            0.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   microtubule-associated protein 4 isoform 1 
MAP4                  0.942   microtubule-associated protein 4 isoform 4 
MAP4                  0.418   microtubule-associated protein 4 isoform 2 
MAP4                  0.313   microtubule-associated protein 4 isoform 5 
MAPT                  0.084   microtubule-associated protein tau isoform 6 
MAPT                  0.082   microtubule-associated protein tau isoform 1 
MAP4                  0.076   microtubule-associated protein 4 isoform 3 
MAP2                  0.075   microtubule-associated protein 2 isoform 4 
MAP2                  0.074   microtubule-associated protein 2 isoform 5 
MAPT                  0.074   microtubule-associated protein tau isoform 2 
MAPT                  0.072   microtubule-associated protein tau isoform 5 
MAPT                  0.071   microtubule-associated protein tau isoform 3 
MAP2                  0.055   microtubule-associated protein 2 isoform 1 
MAP2                  0.052   microtubule-associated protein 2 isoform 2 
MAPT                  0.046   microtubule-associated protein tau isoform 4 
PRG4                  0.040   proteoglycan 4 isoform D 
PRG4                  0.040   proteoglycan 4 isoform C 
PRG4                  0.040   proteoglycan 4 isoform B 
PRG4                  0.040   proteoglycan 4 isoform A 
TTN                   0.032   titin isoform N2-A 
MUC17                 0.028   mucin 17 
ATF7IP                0.028   activating transcription factor 7 interacting protei...
NEFH                  0.026   neurofilament, heavy polypeptide 200kDa 
NACA                  0.025   nascent polypeptide-associated complex alpha subuni...
MUC2                  0.023   mucin 2 precursor 
POM121                0.023   nuclear pore membrane protein 121 
LOC100133756          0.022   PREDICTED: hypothetical protein, partial 
POM121C               0.020   POM121 membrane glycoprotein (rat)-like 
TCOF1                 0.020   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.020   Treacher Collins-Franceschetti syndrome 1 isoform d...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press