Guide to the Human Genome
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Name: LOC100287045 Sequence: fasta or formatted (464aa) NCBI GI: 239742270
Description:

PREDICTED: hypothetical protein XP_002342468 isoform 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {464aa} PREDICTED: hypothetical protein XP_002342469 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         44           3
 C cysteine            2.2         10           1
 D aspartate           3.4         16           1
 E glutamate           5.6         26           2
 F phenylalanine       1.7          8           1
 G glycine             6.7         31           2
 H histidine           2.8         13           2
 I isoleucine          1.3          6           1
 K lysine              6.5         30           2
 L leucine             8.4         39           2
 M methionine          1.7          8           2
 N asparagine          1.9          9           1
 P proline            14.2         66           3
 Q glutamine           5.8         27           2
 R arginine            7.5         35           2
 S serine             10.3         48           5
 T threonine           4.1         19           2
 V valine              5.0         23           2
 W tryptophan          0.6          3           1
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342468 isofor... 
LOC100287045          1.000   PREDICTED: hypothetical protein XP_002342469 isofor...
FAM90A5               0.936   PREDICTED: hypothetical protein 
FAM90A15              0.935   PREDICTED: hypothetical protein LOC389630 
FAM90A3               0.935   PREDICTED: hypothetical protein 
FAM90A7               0.934   hypothetical protein LOC441317 
FAM90A14              0.933   PREDICTED: hypothetical protein 
FAM90A13              0.933   PREDICTED: hypothetical protein 
FAM90A10              0.932   PREDICTED: hypothetical protein LOC441328 
FAM90A9               0.932   PREDICTED: hypothetical protein 
FAM90A8               0.927   PREDICTED: hypothetical protein 
FAM90A1               0.927   hypothetical protein LOC55138 
FAM90A19              0.924   PREDICTED: hypothetical protein 
FAM90A18              0.924   PREDICTED: hypothetical protein LOC441326 
FAM90A12              0.923   PREDICTED: hypothetical protein 
FAM90A20              0.905   PREDICTED: hypothetical protein 
FAM90A20              0.902   PREDICTED: hypothetical protein 
LOC646508             0.210   PREDICTED: hypothetical LOC646508 
LOC646508             0.210   PREDICTED: hypothetical LOC646508 
LOC646508             0.159   PREDICTED: hypothetical LOC646508 
NACA                  0.027   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.026   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.026   PREDICTED: hypothetical protein LOC80164 
MLL2                  0.025   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
PCLO                  0.023   piccolo isoform 2 
PCLO                  0.023   piccolo isoform 1 
HCN4                  0.022   hyperpolarization activated cyclic nucleotide-gated p...
TAF1L                 0.022   TBP-associated factor RNA polymerase 1-like 
PTPN23                0.022   protein tyrosine phosphatase, non-receptor type 23 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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