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Search of human proteins with 38348366
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38348366 suprabasin [Homo sapiens]
(247 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38348366 suprabasin [Homo sapiens] 497 e-141
gi|57864582 hornerin [Homo sapiens] 49 5e-06
gi|60097902 filaggrin [Homo sapiens] 40 0.002
gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Ho... 40 0.002
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ... 40 0.002
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b... 40 0.002
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 39 0.003
gi|171916097 repetin [Homo sapiens] 39 0.004
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 38 0.009
gi|239746652 PREDICTED: hypothetical protein [Homo sapiens] 37 0.021
gi|62122917 filaggrin family member 2 [Homo sapiens] 36 0.035
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 33 0.18
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 33 0.23
gi|18702331 OTU domain containing 7A [Homo sapiens] 33 0.23
gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [H... 33 0.30
gi|169216749 PREDICTED: similar to Putative paraneoplastic antig... 33 0.30
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 32 0.39
gi|19923838 solute carrier family 13 (sodium/sulfate symporters)... 32 0.67
gi|16262452 cingulin [Homo sapiens] 32 0.67
gi|186928829 dermokine isoform 4 precursor [Homo sapiens] 31 0.87
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 31 0.87
gi|33504489 dermokine isoform 2 precursor [Homo sapiens] 31 0.87
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 31 0.87
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 31 1.1
gi|5901944 elastin microfibril interfacer 1 [Homo sapiens] 31 1.1
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 30 1.5
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ... 30 1.5
gi|20070376 solute carrier family 38, member 10 isoform b [Homo ... 30 1.5
gi|119220598 apolipoprotein B48 receptor [Homo sapiens] 30 1.5
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 30 1.9
>gi|38348366 suprabasin [Homo sapiens]
Length = 247
Score = 497 bits (1279), Expect = e-141
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MHLARLVGSCSLLLLLGALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITH 60
MHLARLVGSCSLLLLLGALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITH
Sbjct: 1 MHLARLVGSCSLLLLLGALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITH 60
Query: 61 AGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVN 120
AGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVN
Sbjct: 61 AGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVN 120
Query: 121 NAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQA 180
NAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQA
Sbjct: 121 NAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQA 180
Query: 181 GKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGATTTPLASGASVNTPFINLPALWR 240
GKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGATTTPLASGASVNTPFINLPALWR
Sbjct: 181 GKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGATTTPLASGASVNTPFINLPALWR 240
Query: 241 SVANIMP 247
SVANIMP
Sbjct: 241 SVANIMP 247
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 48.5 bits (114), Expect = 5e-06
Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 9/206 (4%)
Query: 17 GALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMG 76
G+ SGW++S P E G + GL + E G++ G + S
Sbjct: 2438 GSGSGWSSSRGPYESG-SGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQS 2496
Query: 77 SHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGK-EAEKLGHGVNNAAGQA----GKEAD 131
S G+ Q +HG + G G+ G + GHG + + G+
Sbjct: 2497 SSCGQHGASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGS 2556
Query: 132 KAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAG--QAGKELQNAHN 189
+ + +G H +G E G G + ++ + G G+ H++G Q G +
Sbjct: 2557 GSGRSSSSGQHGSGL-GESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSR 2615
Query: 190 GVNQASKEANQLLNGNHQSGSSSHQG 215
G S + G H SGS G
Sbjct: 2616 GERHGSSSGSSSHYGQHGSGSRQSSG 2641
Score = 48.1 bits (113), Expect = 7e-06
Identities = 46/206 (22%), Positives = 74/206 (35%), Gaps = 9/206 (4%)
Query: 17 GALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMG 76
G+ SGW++S P E G + GL + E G++ G + S
Sbjct: 1968 GSGSGWSSSRGPYESG-SGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSASGQS 2026
Query: 77 SHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGK-EAEKLGHGVNNAAGQA----GKEAD 131
S G+ Q +HG + G G+ G + GHG + + G+
Sbjct: 2027 SSCGQHGASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGS 2086
Query: 132 KAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAG--QAGKELQNAHN 189
+ + +G H G E G G + ++ + G G+ H++G Q G +
Sbjct: 2087 GSGRSSSSGQHGPGL-GESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSR 2145
Query: 190 GVNQASKEANQLLNGNHQSGSSSHQG 215
G S + G H SGS G
Sbjct: 2146 GERHGSSSGSSSRYGQHGSGSRQSSG 2171
Score = 47.4 bits (111), Expect = 1e-05
Identities = 45/203 (22%), Positives = 73/203 (35%), Gaps = 9/203 (4%)
Query: 20 SGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHT 79
SGW++S P E G + GL + E G++ G + S S
Sbjct: 1031 SGWSSSRGPYESG-SGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSC 1089
Query: 80 GKELDKGVQGLNHGMDKVAHEINHGIGQAGK-EAEKLGHGVNNAAGQA----GKEADKAV 134
G+ Q +HG + G G+ G + GHG + + G+ +
Sbjct: 1090 GQHGASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSG 1149
Query: 135 QGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAG--QAGKELQNAHNGVN 192
+ +G H +G E G G + ++ + G G+ H++G Q G + G
Sbjct: 1150 RSSSSGQHGSGL-GESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGER 1208
Query: 193 QASKEANQLLNGNHQSGSSSHQG 215
S + G H SGS G
Sbjct: 1209 HGSSSGSSSHYGQHGSGSRQSSG 1231
Score = 46.2 bits (108), Expect = 3e-05
Identities = 45/206 (21%), Positives = 74/206 (35%), Gaps = 9/206 (4%)
Query: 17 GALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMG 76
G+ SGW++S P E + GL + E G++ G + S
Sbjct: 1498 GSGSGWSSSRGPYESG-SSHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQS 1556
Query: 77 SHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGK-EAEKLGHGVNNAAGQA----GKEAD 131
S G+ Q +HG + G G+ G + GHG + + G+
Sbjct: 1557 SSCGQHGASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGS 1616
Query: 132 KAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAG--QAGKELQNAHN 189
+ + +G H +G E G G + ++ + G G+ H++G Q G +
Sbjct: 1617 GSGRSSSSGQHGSGL-GESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSR 1675
Query: 190 GVNQASKEANQLLNGNHQSGSSSHQG 215
G S + G H SGS G
Sbjct: 1676 GERHGSSSRSSSRYGQHGSGSRQSSG 1701
Score = 35.8 bits (81), Expect = 0.035
Identities = 44/203 (21%), Positives = 77/203 (37%), Gaps = 18/203 (8%)
Query: 35 GINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGM 94
G + S + + G + G SG H+ + + S S +G+ Q ++G
Sbjct: 347 GFGQHESGSGQSSGYSKHGSGSG--HSSSQGQH--GSTSGQASSSGQHGSSSRQSSSYGQ 402
Query: 95 DKVAHEINHGIGQ-AGKEAEKLGHGVNNAAGQAGKEADKAVQGF----HTGVHQAGKEAE 149
+ A + G GQ + + GHG + + + GF +G + +G
Sbjct: 403 HESASRHSSGRGQHSSGSGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSGYS 462
Query: 150 KLGQGVNHAADQAGKEVEKLGQGAHHAAG--QAGKELQNAHNGVNQASKEANQLLNGNHQ 207
G G + ++ + + G G+ H++G Q G + G Q S + G H
Sbjct: 463 S-GFGHHESSSEHSSGYTQHGSGSGHSSGHGQHGSRSGQSSRGERQGSSAGSSSSYGQHG 521
Query: 208 SGS------SSHQGGATTTPLAS 224
SGS S H G+ +P S
Sbjct: 522 SGSRQSLGHSRHGSGSGQSPSPS 544
Score = 33.9 bits (76), Expect = 0.13
Identities = 47/211 (22%), Positives = 74/211 (35%), Gaps = 15/211 (7%)
Query: 20 SGWAASDDPIEKVIEGINRGLSNAEREVGKALD----GINSGITHAGREVEKVFNGLSNM 75
SG ++S P E G + GL + E G++ G +SG + + S+
Sbjct: 565 SGRSSSRGPYESG-SGHSSGLGHQESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSC 623
Query: 76 GSH---TGKELDKGVQGLNHGMDKVAHEINHGIGQA---GKEAEKLGHGVNNAAGQAGKE 129
G H +G+ G G + G GQ+ G+ GH +++ GQ G
Sbjct: 624 GQHGATSGQSSSHGQHGSGSSQSSRYGQQGSGSGQSPSRGRHGSDFGH--SSSYGQHGSG 681
Query: 130 AD-KAVQGFHTGVH-QAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNA 187
+ + G H V Q+ K G G + Q G H +
Sbjct: 682 SGWSSSNGPHGSVSGQSSGFGHKSGSGQSSGYSQHGSGSSHSSGYRKHGSRSGQSSRSEQ 741
Query: 188 HNGVNQASKEANQLLNGNHQSGSSSHQGGAT 218
H + S Q +G+HQS QG +
Sbjct: 742 HGSSSGLSSSYGQHGSGSHQSSGHGRQGSGS 772
Score = 30.8 bits (68), Expect = 1.1
Identities = 36/152 (23%), Positives = 52/152 (34%), Gaps = 14/152 (9%)
Query: 76 GSHTGKELDKGVQGLNHGMDKVAHEINHGIGQA---GKEAEKLGHGVN---NAAGQ---A 126
GS +G G G G GQA G+ G G + +A+G
Sbjct: 782 GSSSGHSSSHGQHGSGTSCSSSCGHYESGSGQASGFGQHESGSGQGYSQHGSASGHFSSQ 841
Query: 127 GKEADKAVQGFHTGVHQAGK-EAEKLGQ--GVNHAADQAGKEVEKLGQGAHHAAGQAGKE 183
G+ + Q +G H + ++ GQ +H A G+ GQ H GQ G
Sbjct: 842 GRHGSTSGQSSSSGQHDSSSGQSSSYGQHESASHHASGRGRHGSGSGQSPGH--GQRGSG 899
Query: 184 LQNAHNGVNQASKEANQLLNGNHQSGSSSHQG 215
+ + S +G H SGS G
Sbjct: 900 SGQSPSYGRHGSGSGRSSSSGRHGSGSGQSSG 931
Score = 30.0 bits (66), Expect = 1.9
Identities = 33/151 (21%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 66 EKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQ 125
E + LS +G+ Q ++G + G GQ G G G + GQ
Sbjct: 153 ESISRRLSFQRDFSGQHNSYSGQSSSYGEQNSDSHQSSGRGQCGS-----GSGQSPNYGQ 207
Query: 126 AGKEADKAVQGFHTGVHQAGK-EAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKEL 184
G + Q H +G ++ Q + + +G G G GQ G
Sbjct: 208 HGSGSG---QSSSNDTHGSGSGQSSGFSQHKSSSGQSSGYSQHGSGSGHSSGYGQHGSRS 264
Query: 185 QNAHNGVNQASKEANQLLNGNHQSGSSSHQG 215
+ G S + G H SGS G
Sbjct: 265 GQSSRGERHRSSSGSSSSYGQHGSGSRQSLG 295
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 40.0 bits (92), Expect = 0.002
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 20/164 (12%)
Query: 76 GSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAV- 134
G+ TG G QG +H ++ H Q G++ + GH ++ G+ G +++V
Sbjct: 486 GTSTG-----GRQGSHH--EQARDSSRHSASQEGQDTIR-GHPGSSRGGRQGSHHEQSVN 537
Query: 135 QGFHTGVHQA-----GKEAEKLGQGVNHAADQAGKEVEKLGQGA------HHAAGQAGKE 183
+ H+G H + G+ GQ + +A + + E+ G G HH A
Sbjct: 538 RSGHSGSHHSHTTSQGRSDASHGQSGSRSASRQTRNEEQSGDGTRHSGSRHHEASSQADS 597
Query: 184 LQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
+++ G Q+S G+ S S QG + + SG++
Sbjct: 598 SRHSQVGQGQSSGPRTSRNQGSSVSQDSDSQGHSEDSERWSGSA 641
Score = 38.5 bits (88), Expect = 0.005
Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 15/152 (9%)
Query: 88 QGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAV-QGFHTGVHQA-- 144
QG +H ++ H Q G++ + GH ++ G+ G +++V + H+G H +
Sbjct: 3411 QGSHH--EQARDSSRHSASQEGQDTIR-GHPGSSRRGRQGSHYEQSVDRSGHSGSHHSHT 3467
Query: 145 ---GKEAEKLGQGVNHAADQAGKEVEKLGQGA------HHAAGQAGKELQNAHNGVNQAS 195
G+ GQ + +A + + E+ G G+ HH A +++ +G Q++
Sbjct: 3468 TSQGRSDASRGQSGSRSASRQTRNDEQSGDGSRHSWSHHHEASTQADSSRHSQSGQGQSA 3527
Query: 196 KEANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
G+ S S QG + + SG++
Sbjct: 3528 GPRTSRNQGSSVSQDSDSQGHSEDSERWSGSA 3559
Score = 38.1 bits (87), Expect = 0.007
Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 8/200 (4%)
Query: 34 EGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLN-- 91
E +RG + + E ++ G G H + + + G + D G +G +
Sbjct: 1983 ESSSRGQAASSHEQARSSAGERHGSHHQLQSADSSRHSGIGHGQASSAVRDSGHRGYSGS 2042
Query: 92 HGMDKVAHEIN---HGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQG-FHTGVHQAGKE 147
D H + + GK +A GQ+G+ + ++ + H+ +
Sbjct: 2043 QASDSEGHSEDSDTQSVSAQGKAGPHQQSHKESARGQSGESSGRSGSFLYQVSTHEQSES 2102
Query: 148 AEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQLLNGNHQ 207
GQ + G ++ + H+A Q G++ H G ++ ++ + +
Sbjct: 2103 TH--GQSAPSTGGRQGSHYDQAQDSSRHSASQEGQDTIRGHPGPSRGGRQGSHQEQSVDR 2160
Query: 208 SGSSSHQGGATTTPLASGAS 227
SG S TT+ S AS
Sbjct: 2161 SGHSGSHHSHTTSQGRSDAS 2180
Score = 37.4 bits (85), Expect = 0.012
Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 19/183 (10%)
Query: 43 AEREVGKALDGINSGITHAGREVEKVFNGLSNMGSH--TGKELDKGVQGLNHGMDKVAHE 100
+ +E + G SG H+G + +V + SH TG +G QG H ++
Sbjct: 2719 SHQESARGRSGETSG--HSGSFLYQVSTHEQSESSHGWTGPST-RGRQGSRH--EQAQDS 2773
Query: 101 INHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGF-HTGVHQA-----GKEAEKLGQG 154
H Q G++ + GH ++ G+ G + +V H+G H + G+ GQ
Sbjct: 2774 SRHSASQDGQDTIR-GHPGSSRGGRQGYHHEHSVDSSGHSGSHHSHTTSQGRSDASRGQS 2832
Query: 155 VNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQLLNGNHQS---GSS 211
+ +A + + E+ G G+ H+ + + + H +++ S+ G+ +S GSS
Sbjct: 2833 GSRSASRTTRNEEQSGDGSRHSGSRHHE--ASTHADISRHSQAVQGQSEGSRRSRRQGSS 2890
Query: 212 SHQ 214
Q
Sbjct: 2891 VSQ 2893
Score = 36.2 bits (82), Expect = 0.027
Identities = 38/202 (18%), Positives = 75/202 (37%), Gaps = 13/202 (6%)
Query: 34 EGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLN-- 91
E +RG + + E ++ G G H + + + + G + D+G +G +
Sbjct: 362 ETSSRGQTASSHEQARSSPGERHGSGHQ-QSADSSRHSATGRGQASSAVSDRGHRGSSGS 420
Query: 92 HGMDKVAHEINH------GIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAG 145
D H N G G+AG + +G+ + ++ + H+
Sbjct: 421 QASDSEGHSENSDTQSVSGHGKAGLRQQSHQESTRGRSGERSGRSGSSL--YQVSTHEQP 478
Query: 146 KEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQLLNGN 205
A G+ + G E+ + H+A Q G++ H G ++ ++ +
Sbjct: 479 DSAH--GRTGTSTGGRQGSHHEQARDSSRHSASQEGQDTIRGHPGSSRGGRQGSHHEQSV 536
Query: 206 HQSGSSSHQGGATTTPLASGAS 227
++SG S TT+ S AS
Sbjct: 537 NRSGHSGSHHSHTTSQGRSDAS 558
Score = 35.8 bits (81), Expect = 0.035
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 15/154 (9%)
Query: 86 GVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAV-QGFHTGVHQA 144
G QG ++ D+ H Q G++ + GH + G+ G +++V + H+G H +
Sbjct: 2113 GRQGSHY--DQAQDSSRHSASQEGQDTIR-GHPGPSRGGRQGSHQEQSVDRSGHSGSHHS 2169
Query: 145 -----GKEAEKLGQGVNHAADQAGKEVEKLGQGA------HHAAGQAGKELQNAHNGVNQ 193
G+ GQ + +A + + E+ G G+ HH A +++ G Q
Sbjct: 2170 HTTSQGRSDASRGQSGSRSASRKTYDKEQSGDGSRHSGSHHHEASSWADSSRHSLVGQGQ 2229
Query: 194 ASKEANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
+S G+ S S +G + + SG++
Sbjct: 2230 SSGPRTSRPRGSSVSQDSDSEGHSEDSERRSGSA 2263
Score = 35.4 bits (80), Expect = 0.046
Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 6/168 (3%)
Query: 60 HAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGV 119
H+G + + + + G H G + H D ++ GQAG +
Sbjct: 1370 HSGIGHRQASSAVRDSG-HRGSSGSQVTNSEGHSEDSDTQSVS-AHGQAGPHQQS---HK 1424
Query: 120 NNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQ 179
+A GQ+G+ + ++ + F V + GQ + G E+ + H+A Q
Sbjct: 1425 ESARGQSGESSGRS-RSFLYQVSSHEQSESTHGQTAPSTGGRQGSRHEQARNSSRHSASQ 1483
Query: 180 AGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
G++ H G ++ ++ + +SG S + TT S AS
Sbjct: 1484 DGQDTIRGHPGSSRGGRQGSYHEQSVDRSGHSGYHHSHTTPQGRSDAS 1531
Score = 34.3 bits (77), Expect = 0.10
Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 5/150 (3%)
Query: 78 HTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGF 137
H G + H D ++ GQAG + H + AG+ +
Sbjct: 3656 HRGSSGSQASDSEGHSEDSDTQSVS-AHGQAGPHQQS--HQESTRGRSAGRSGRSGSFLY 3712
Query: 138 HTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKE 197
H+ + A G+ + G E+ + H+A Q G++ H G + ++
Sbjct: 3713 QVSTHEQSESAH--GRAGPSTGGRQGSRHEQARDSSRHSASQEGQDTIRGHPGSRRGGRQ 3770
Query: 198 ANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
+ +SG S TT+ S AS
Sbjct: 3771 GSYHEQSVDRSGHSGSHHSHTTSQGRSDAS 3800
Score = 33.9 bits (76), Expect = 0.13
Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 6/168 (3%)
Query: 60 HAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGV 119
H+G + + + + G H G + H D ++ G GQAG +
Sbjct: 722 HSGTGHGQASSAVRDSG-HRGSSGSQATDSEGHSEDSDTQSVS-GHGQAGHHQQSHQESA 779
Query: 120 NNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQ 179
+ +G+ + + + + H+ + + G + G E+ + H+A Q
Sbjct: 780 RDRSGERSRRSGSFL--YQVSTHKQSESSH--GWTGPSTGVRQGSHHEQARDNSRHSASQ 835
Query: 180 AGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
G++ H G ++ ++ + +SG S TT+ S AS
Sbjct: 836 DGQDTIRGHPGSSRRGRQGSHHEQSVDRSGHSGSHHSHTTSQGRSDAS 883
Score = 33.9 bits (76), Expect = 0.13
Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 19/155 (12%)
Query: 73 SNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADK 132
S + G D Q ++ +H+ +H G+ E GH + + E +
Sbjct: 2690 SQASDNEGHSEDSDTQSVSAHGQAGSHQQSHQESARGRSGETSGHSGSFLYQVSTHEQSE 2749
Query: 133 AVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVN 192
+ G+ TG G+ QG H E+ + H+A Q G++ H G
Sbjct: 2750 SSHGW-TGPSTRGR------QGSRH---------EQAQDSSRHSASQDGQDTIRGHPG-- 2791
Query: 193 QASKEANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
+S+ Q + H SS H G + + G S
Sbjct: 2792 -SSRGGRQGYHHEHSVDSSGHSGSHHSHTTSQGRS 2825
Score = 33.9 bits (76), Expect = 0.13
Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 19/155 (12%)
Query: 73 SNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADK 132
S + G D Q ++ +H+ +H G+ E GH + + E +
Sbjct: 3014 SQASDNEGHSEDSDTQSVSAHGQAGSHQQSHQESARGRSGETSGHSGSFLYQVSTHEQSE 3073
Query: 133 AVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVN 192
+ G+ TG G+ QG H E+ + H+A Q G++ H G
Sbjct: 3074 SSHGW-TGPSTRGR------QGSRH---------EQAQDSSRHSASQYGQDTIRGHPG-- 3115
Query: 193 QASKEANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
+S+ Q + H SS H G + + G S
Sbjct: 3116 -SSRGGRQGYHHEHSVDSSGHSGSHHSHTTSQGRS 3149
Score = 33.9 bits (76), Expect = 0.13
Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 5/150 (3%)
Query: 78 HTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGF 137
H G + H + ++ G GQAG + + +G G+ +
Sbjct: 3332 HWGSSGSQASDSEGHSEESDTQSVS-GHGQAGPHQQSHQESARDRSG--GRSGRSGSFLY 3388
Query: 138 HTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKE 197
H+ + A G+ + G E+ + H+A Q G++ H G ++ ++
Sbjct: 3389 QVSTHEQSESAH--GRTRTSTGRRQGSHHEQARDSSRHSASQEGQDTIRGHPGSSRRGRQ 3446
Query: 198 ANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
+ +SG S TT+ S AS
Sbjct: 3447 GSHYEQSVDRSGHSGSHHSHTTSQGRSDAS 3476
Score = 33.1 bits (74), Expect = 0.23
Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 86 GVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAV-QGFHTGVHQA 144
G QG H ++ H Q G++ + GH + G+ G +++V + H+G H +
Sbjct: 3733 GRQGSRH--EQARDSSRHSASQEGQDTIR-GHPGSRRGGRQGSYHEQSVDRSGHSGSHHS 3789
Query: 145 -----GKEAEKLGQGVNHAADQAGKEVEKLGQGA------HHAAGQAGKELQNAHNGVNQ 193
G+ GQ + +A + + E+ G G+ HH A +++ +G +
Sbjct: 3790 HTTSQGRSDASHGQSGSRSASRETRNEEQSGDGSRHSGSRHHEASTQADSSRHSQSGQGE 3849
Query: 194 ASKEANQLLNGNHQSGSSSHQ 214
++ G+ S S +
Sbjct: 3850 SAGSRRSRRQGSSVSQDSDSE 3870
Score = 32.7 bits (73), Expect = 0.30
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 116 GHGVNNAAGQAGKEADKAVQGFHTG----------VHQAGKEAEKLGQGVNHAADQAGKE 165
GHG + Q+ +E+ + G +G H+ + A G+ + G
Sbjct: 1088 GHGQDGPHQQSHQESARDWSGGRSGRSGSFIYQVSTHEQSESAH--GRTRTSTGRRQGSH 1145
Query: 166 VEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGATTTPLASG 225
E+ + H+A Q G++ AH G + ++ + +SG S TT+ S
Sbjct: 1146 HEQARDSSRHSASQEGQDTIRAHPGSRRGGRQGSHHEQSVDRSGHSGSHHSHTTSQGRSD 1205
Query: 226 AS 227
AS
Sbjct: 1206 AS 1207
Score = 32.0 bits (71), Expect = 0.51
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 26/176 (14%)
Query: 76 GSHTGKELDKGVQ-GLNHGMDKVAHEINHGIGQAGKEA-EKLGHGVNN------AAGQAG 127
GSH + D G+ HG A + G +G +A + GH ++ A GQAG
Sbjct: 2331 GSHHQQSADSSRHSGIGHGQASSAVRDSGHRGSSGSQASDSEGHSEDSDTQSVSAHGQAG 2390
Query: 128 ---KEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQA--GKEVEKLG--QGAHH----- 175
+ ++ +G G ++G+ L Q H ++ G+ G QG+HH
Sbjct: 2391 PHQQSHQESTRGRSAG--RSGRSGSFLYQVSTHEQSESAHGRTGTSTGGRQGSHHKQARD 2448
Query: 176 ----AAGQAGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
+ Q G++ + H G + ++ + +SG S TT+ S AS
Sbjct: 2449 SSRHSTSQEGQDTIHGHPGSSSGGRQGSHYEQLVDRSGHSGSHHSHTTSQGRSDAS 2504
Score = 30.8 bits (68), Expect = 1.1
Identities = 35/148 (23%), Positives = 53/148 (35%), Gaps = 19/148 (12%)
Query: 77 SHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLG--HGVNNAAGQAGKEADKAV 134
+H G ++ G H + HE G G + + K G H N+++GQA ++A
Sbjct: 644 NHHGSAQEQSRDGSRH--PRSHHEDRAGHGHSADSSRKSGTRHTQNSSSGQAASSHEQAR 701
Query: 135 QGF---HTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
H HQ G H QA V +G G A +
Sbjct: 702 SSAGERHGSRHQLQSADSSRHSGTGHG--QASSAVRD--------SGHRGSSGSQATDSE 751
Query: 192 NQASKEANQLLNGNHQSG--SSSHQGGA 217
+ Q ++G+ Q+G SHQ A
Sbjct: 752 GHSEDSDTQSVSGHGQAGHHQQSHQESA 779
Score = 30.0 bits (66), Expect = 1.9
Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 14/167 (8%)
Query: 73 SNMGSHTGKELDKGVQGL--NHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEA 130
S+ S TG+ D V G N G + G + HG Q+ +E+
Sbjct: 1691 SSTDSGTGRRQDSSVVGDSGNRGSSGSQASDSEGHSEESDTQSVSAHGQAGPHQQSHQES 1750
Query: 131 DKAVQGFHTG----------VHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQA 180
+ G +G H+ + A G+ + E+ + H+A Q
Sbjct: 1751 TRGQSGERSGRSGSFLYQVSTHEQSESAH--GRTGPSTGGRQRSRHEQARDSSRHSASQE 1808
Query: 181 GKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
G++ H G ++ ++ + SG S TT+ S S
Sbjct: 1809 GQDTIRGHPGSSRGGRQGSHYEQSVDSSGHSGSHHSHTTSQERSDVS 1855
Score = 29.3 bits (64), Expect = 3.3
Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 16/155 (10%)
Query: 77 SHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLG--HGVNNAAGQAGK--EADK 132
+H G ++ G H + HE G G + + + + G H N++ GQA E +
Sbjct: 2266 NHHGSAQEQSRDGSRH--PRSHHEDRAGHGHSAESSRQSGTHHAENSSGGQAASSHEQAR 2323
Query: 133 AVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVN 192
+ G G H G+ H QA V +G G A +
Sbjct: 2324 SSAGERHGSHHQQSADSSRHSGIGHG--QASSAVRD--------SGHRGSSGSQASDSEG 2373
Query: 193 QASKEANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
+ Q ++ + Q+G +T ++G S
Sbjct: 2374 HSEDSDTQSVSAHGQAGPHQQSHQESTRGRSAGRS 2408
Score = 29.3 bits (64), Expect = 3.3
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 16/155 (10%)
Query: 77 SHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLG--HGVNNAAGQAGK--EADK 132
+H G ++ G H HE G G + + + + G H N++ GQA E +
Sbjct: 3562 NHRGSAQEQSRDGSRHPTSH--HEDRAGHGHSAESSRQSGTHHAENSSGGQAASSHEQAR 3619
Query: 133 AVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVN 192
+ G G H G+ H QA V +G G A +
Sbjct: 3620 SSAGERHGSHHQQSADSSRHSGIGHG--QASSAVRD--------SGHRGSSGSQASDSEG 3669
Query: 193 QASKEANQLLNGNHQSGSSSHQGGATTTPLASGAS 227
+ Q ++ + Q+G +T ++G S
Sbjct: 3670 HSEDSDTQSVSAHGQAGPHQQSHQESTRGRSAGRS 3704
>gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Homo
sapiens]
Length = 2378
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 12/165 (7%)
Query: 34 EGINRGLSNAEREVG----KALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQG 89
E +G++N + G A G+ + + G E +G++N + G + VQG
Sbjct: 942 EDAAQGVANEDAAHGVANEDAAQGVANEVAAQGVANEDAVHGVANEDAVQGVANEVEVQG 1001
Query: 90 LNH--GMDKVAHE-INHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGK 146
+ H + +A+E HGI E HG+ N G + A QG V G
Sbjct: 1002 IAHKDAIQGIANEDAAHGIAN-----EVAAHGIANEDAAQGIANEDAAQGIANEVAAHGI 1056
Query: 147 EAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
E QG+ + G E QG H G ++A +GV
Sbjct: 1057 SKEDAVQGIANEDAAQGIANEDAAQGIAHEDAVQGIANEDAVHGV 1101
Score = 38.5 bits (88), Expect = 0.005
Identities = 48/189 (25%), Positives = 74/189 (39%), Gaps = 13/189 (6%)
Query: 23 AASDDPIEKVIEGINR-----GLSNAEREVGKALDGINSGITHAGREVEKVFNGLSN--M 75
AA E V +GI G++N + A GI + G E V +G++ +
Sbjct: 2025 AAQGIATEDVADGIANEDAAHGVANEDAAQAIAKPDAAHGIANEGIATEDVADGIAEDAV 2084
Query: 76 GSHTGKELDKGV--QGLNHGMDK--VAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEAD 131
T +E + + Q HG+ K A + + + G E HGV N G +
Sbjct: 2085 QGITNEEAAQAIAKQDAAHGITKEDAAQGVTNEVAAQGVANEDAAHGVANEVAAHGVANE 2144
Query: 132 KAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
A QG V G E QGV + + G + QG + G + A +GV
Sbjct: 2145 DAAQGVANEVAAQGVANEDAVQGVANEVEVQGIAHKDAIQGIANEDAAQGVANEVAAHGV 2204
Query: 192 NQASKEANQ 200
A+++A Q
Sbjct: 2205 --ANEDAAQ 2211
Score = 36.6 bits (83), Expect = 0.021
Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 12/181 (6%)
Query: 18 ALSGWAASDDPIEKVIEGINRGLSNAEREVG----KALDGINSGITHAGREVEKVFNGLS 73
A+ G A D E G++N + G A GI + + G E G++
Sbjct: 1007 AIQGIANEDAAHGIANEVAAHGIANEDAAQGIANEDAAQGIANEVAAHGISKEDAVQGIA 1066
Query: 74 NMGSHTGKELDKGVQGLNH--GMDKVAHE-INHGIGQAGKEAEKLGHGVNNAAGQAGKEA 130
N + G + QG+ H + +A+E HG+ + E HGV N G
Sbjct: 1067 NEDAAQGIANEDAAQGIAHEDAVQGIANEDAVHGVAK-----EVAAHGVANEDPVQGVAN 1121
Query: 131 DKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNG 190
+ AVQG V G E QG+ + G E G + G ++A G
Sbjct: 1122 EDAVQGVANEVEVQGVAHEDAVQGIANEDAAHGIANEVAAHGIANEDAAQGIANEDAAQG 1181
Query: 191 V 191
+
Sbjct: 1182 I 1182
Score = 36.2 bits (82), Expect = 0.027
Identities = 39/153 (25%), Positives = 58/153 (37%), Gaps = 13/153 (8%)
Query: 23 AASDDPIEKVIEGINR-----GLSNAEREVGKALDGINSGITHA----GREVEKVFNGLS 73
AA D E +GI++ G++N + G A + G+ + G E G++
Sbjct: 181 AAQDIANEDAAQGISKEDAVQGIANEDAAQGIAKEDPVQGVANEDPVQGVANEDAVQGVA 240
Query: 74 NMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKA 133
N G + VQG+ + + AH I + + G E G+ N G + A
Sbjct: 241 NEVEVQGVAHEDAVQGIAN--EDAAHGITNEVAAHGIANEDAAQGIANEDAAQGIAHEDA 298
Query: 134 VQGF--HTGVHQAGKEAEKLGQGVNHAADQAGK 164
VQG VH KE G AA K
Sbjct: 299 VQGIANEDAVHGVAKEVAAHGVANEDAAHAIAK 331
Score = 35.0 bits (79), Expect = 0.060
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 13/157 (8%)
Query: 38 RGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNH--GMD 95
+G++N + A GI + + G E G++N + G + QG+ H +
Sbjct: 1622 QGIANQD-----AAQGIANEVAAHGISKEDAVQGIANEDAAQGIANEDAAQGIAHEDAVQ 1676
Query: 96 KVAHE-INHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQG 154
+A+E HG+ + E HGV N G + AVQG V G E QG
Sbjct: 1677 GIANEDAVHGVAK-----EVAAHGVANEDPVQGVANEDAVQGVANEVEVQGVAHEDAVQG 1731
Query: 155 VNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
+ + G E G + G ++A G+
Sbjct: 1732 IANEDAAHGITNEVAAHGIANEDAAQGIAHEDAVQGI 1768
Score = 35.0 bits (79), Expect = 0.060
Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 25/177 (14%)
Query: 24 ASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKEL 83
A++D + + E +G++N E A GIT E G++N
Sbjct: 2071 ATEDVADGIAEDAVQGITNEEAAQAIAKQDAAHGITK-----EDAAQGVTN--------- 2116
Query: 84 DKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQ 143
+ QG+ + + AH + + + G E GV N G + AVQG V
Sbjct: 2117 EVAAQGVAN--EDAAHGVANEVAAHGVANEDAAQGVANEVAAQGVANEDAVQGVANEVEV 2174
Query: 144 AG---KEA------EKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
G K+A E QGV + G E QG + G ++A GV
Sbjct: 2175 QGIAHKDAIQGIANEDAAQGVANEVAAHGVANEDAAQGVANEVAAQGVANEDAAQGV 2231
Score = 34.7 bits (78), Expect = 0.079
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 15/182 (8%)
Query: 24 ASDDPIEKVIEGIN-RGLSN--AEREVGK--ALDGINSGITHAGREVEKVFNGLSNMGSH 78
A++D + V + + G++N A + K A GI + + G E V +G++N +
Sbjct: 303 ANEDAVHGVAKEVAAHGVANEDAAHAIAKPDAAHGIANEVATQGIATEDVADGIANEDAA 362
Query: 79 TGKELDKGVQGLNHGMDKVAHEIN----HGIGQAGKEAEKLG-----HGVNNAAGQAGKE 129
G + G+ + D V +N HG+ A+ + HG+ N G
Sbjct: 363 HGVAKEVTAHGVANE-DAVQGVVNEDALHGVVANEDAAQAIAKPDAAHGIANEVAAHGIA 421
Query: 130 ADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHN 189
+ A QG V G E QG+ + G E QG H G ++A +
Sbjct: 422 NEDAAQGIANEVAAHGISKEDAVQGIANEDAAQGIAHEDAAQGIAHEDAVQGIANEDAVH 481
Query: 190 GV 191
GV
Sbjct: 482 GV 483
Score = 34.7 bits (78), Expect = 0.079
Identities = 44/192 (22%), Positives = 71/192 (36%), Gaps = 22/192 (11%)
Query: 18 ALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGS 77
AL G A++D + + + + G A +G+ + + G E V +G++ +
Sbjct: 867 ALHGVVANEDAAQAI--------AKPDAAHGIANEGVANEVAAQGIATEDVADGIAKDAA 918
Query: 78 HTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGF 137
H G ++ Q + AH I + G E HGV N G + A QG
Sbjct: 919 H-GITKEEAAQAI--AKQDAAHSITNEDAAQGVANEDAAHGVANEDAAQGVANEVAAQGV 975
Query: 138 --HTGVHQAGKEAEKLG-------QGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAH 188
VH E G QG+ H G E G + G ++A
Sbjct: 976 ANEDAVHGVANEDAVQGVANEVEVQGIAHKDAIQGIANEDAAHGIANEVAAHGIANEDAA 1035
Query: 189 NGVNQASKEANQ 200
G+ A+++A Q
Sbjct: 1036 QGI--ANEDAAQ 1045
Score = 34.3 bits (77), Expect = 0.10
Identities = 47/195 (24%), Positives = 70/195 (35%), Gaps = 21/195 (10%)
Query: 18 ALSGWAASDDPIEKVI----------EGINRGLSNAEREVG----KALDGINSGITHAGR 63
AL G A++D + + E G++N + G A GI + + G
Sbjct: 650 ALHGVVANEDAAQAIAKPDAAHGIANEVAAHGIANEDAAQGIANEDAAQGIANEVAAHGI 709
Query: 64 EVEKVFNGLSNMGSHTGKELDKGVQGLN-----HGMDK--VAHEINHGIGQAGKEAEKLG 116
E G++N + G + VQG+ HG+ K AH + + G E +
Sbjct: 710 SKEDAVQGIANEDAAQGIAHEDAVQGIANEDAVHGVAKEVAAHGVANEDPVQGVANEDVV 769
Query: 117 HGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHA 176
GV N G + AVQG G E GV + G E QG +
Sbjct: 770 QGVANEVEVQGIAHEDAVQGIANEDAAHGIANEVAAHGVANEDAAQGVANEDAAQGVANE 829
Query: 177 AGQAGKELQNAHNGV 191
G ++A GV
Sbjct: 830 DAVHGVANEDAAQGV 844
Score = 32.7 bits (73), Expect = 0.30
Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 6/158 (3%)
Query: 38 RGLSNAEREVGKA----LDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHG 93
+G++N + G A + G+ + + G E G++N + G + QG+ +
Sbjct: 1847 QGIANEDAAQGIAKEDPIQGVANEVEVQGVAHEDAVQGIANEDAAHGIANEDAAQGIAN- 1905
Query: 94 MDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQ 153
+ A +I + G E G+ N G + AVQG G E
Sbjct: 1906 -EDAAQDIANEDAAQGISKEDAVQGIANQDAAQGIAKEDAVQGIANEDAAQGIANEVAAH 1964
Query: 154 GVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
G+ + G E QG H G ++A +GV
Sbjct: 1965 GIANEDAAQGIANEDAAQGIAHEDAVQGIANEDAVHGV 2002
Score = 32.3 bits (72), Expect = 0.39
Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 9/148 (6%)
Query: 24 ASDDPIEKVI-EGINRGLSNAEREVGKALDGINSGITHA----GREVEKVFNGLSNMGSH 78
A++D + + E +G++N + G A + G+ + G E G++N
Sbjct: 1075 ANEDAAQGIAHEDAVQGIANEDAVHGVAKEVAAHGVANEDPVQGVANEDAVQGVANEVEV 1134
Query: 79 TGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGF- 137
G + VQG+ + + AH I + + G E G+ N G + AVQG
Sbjct: 1135 QGVAHEDAVQGIAN--EDAAHGIANEVAAHGIANEDAAQGIANEDAAQGIAHEDAVQGIA 1192
Query: 138 -HTGVHQAGKEAEKLGQGVNHAADQAGK 164
VH KE G AA K
Sbjct: 1193 NEDAVHGVAKEVAAHGVANEDAAHAIAK 1220
Score = 32.0 bits (71), Expect = 0.51
Identities = 42/169 (24%), Positives = 62/169 (36%), Gaps = 11/169 (6%)
Query: 34 EGINRGLSNAEREVGKALDGINSGITHA----GREVEKVFNGLSNMGSHTGKELDKGVQG 89
E +G++N + G A + GI+ G E G++N + G + VQG
Sbjct: 1032 EDAAQGIANEDAAQGIANEVAAHGISKEDAVQGIANEDAAQGIANEDAAQGIAHEDAVQG 1091
Query: 90 LN-----HGMDK--VAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVH 142
+ HG+ K AH + + G E GV N G + AVQG
Sbjct: 1092 IANEDAVHGVAKEVAAHGVANEDPVQGVANEDAVQGVANEVEVQGVAHEDAVQGIANEDA 1151
Query: 143 QAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
G E G+ + G E QG H G ++A +GV
Sbjct: 1152 AHGIANEVAAHGIANEDAAQGIANEDAAQGIAHEDAVQGIANEDAVHGV 1200
Score = 31.2 bits (69), Expect = 0.87
Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 7/174 (4%)
Query: 18 ALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGS 77
A+ G A D E +G++N + G A + G+ + E G++N
Sbjct: 1268 AVQGIANEDAAQGIAKEDAVQGIANEDAAQGIAKEDPVQGVAN-----EDPIQGVANEVE 1322
Query: 78 HTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGF 137
G + VQG+ + + AH I + G E + N G + AVQG
Sbjct: 1323 VQGVAHEDAVQGIAN--EDAAHGIANEDAAQGIANEDAAQDIANEDAAQGISKEDAVQGI 1380
Query: 138 HTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
G E QGV + G E QG H G ++A +G+
Sbjct: 1381 ANEDAAQGIAKEDPVQGVANEDAVQGVANEVEVQGVAHEDAVQGIANEDAAHGI 1434
Score = 30.8 bits (68), Expect = 1.1
Identities = 41/173 (23%), Positives = 65/173 (37%), Gaps = 7/173 (4%)
Query: 24 ASDDPIEKVIEGIN-RGLSNAEREVGKALDGINSGITHA----GREVEKVFNGLSNMGSH 78
A++DPI+ V + +G+++ + G A + GI + G E ++N +
Sbjct: 1309 ANEDPIQGVANEVEVQGVAHEDAVQGIANEDAAHGIANEDAAQGIANEDAAQDIANEDAA 1368
Query: 79 TGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFH 138
G + VQG+ + + A I G E GV N G + AVQG
Sbjct: 1369 QGISKEDAVQGIAN--EDAAQGIAKEDPVQGVANEDAVQGVANEVEVQGVAHEDAVQGIA 1426
Query: 139 TGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
G E G+ + G E QG H G ++A +GV
Sbjct: 1427 NEDAAHGIANEVAAHGIANEDAAQGIANEDAAQGIAHEDAVQGIANEDAVHGV 1479
Score = 30.8 bits (68), Expect = 1.1
Identities = 50/216 (23%), Positives = 79/216 (36%), Gaps = 41/216 (18%)
Query: 24 ASDDPIEKVI-EGINRGLSNAEREVGKALDGINSGITHA----GREVEKVFNGLSNMGSH 78
A++DP++ V E +G++N G A + GI + G E +G++N +
Sbjct: 1697 ANEDPVQGVANEDAVQGVANEVEVQGVAHEDAVQGIANEDAAHGITNEVAAHGIANEDAA 1756
Query: 79 TGKELDKGVQGLNH--GMDKVAHEIN-HGIGQA--------------------------- 108
G + VQG+ + + VA E+ HG+
Sbjct: 1757 QGIAHEDAVQGIANEDAVHSVAKEVAAHGVANEDAAHAIAKPDAARGIANEVAAQGIATE 1816
Query: 109 ----GKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGK 164
G E HGV N G + AVQG G E QGV + + G
Sbjct: 1817 DVADGIPNEDAAHGVANEVAAHGISKEDAVQGIANEDAAQGIAKEDPIQGVANEVEVQGV 1876
Query: 165 EVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQ 200
E QG + G ++A G+ A+++A Q
Sbjct: 1877 AHEDAVQGIANEDAAHGIANEDAAQGI--ANEDAAQ 1910
Score = 30.0 bits (66), Expect = 1.9
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 9/182 (4%)
Query: 24 ASDDPIEKVI-EGINRGLSNAEREVGKALDGINSGITH--AGREVEK--VFNGLSNMGSH 78
A++D + + E +G++N + G A + G+ + A + K G++N +
Sbjct: 1174 ANEDAAQGIAHEDAVQGIANEDAVHGVAKEVAAHGVANEDAAHAIAKPDAARGIANEVAA 1233
Query: 79 TGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFH 138
G + G+ + + AH + + + G E G+ N G + AVQG
Sbjct: 1234 QGIATEDVADGIAN--EDAAHGVANEVAAHGISKEDAVQGIANEDAAQGIAKEDAVQGIA 1291
Query: 139 TGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEA 198
G E QGV + G E QG H G ++A +G+ A+++A
Sbjct: 1292 NEDAAQGIAKEDPVQGVANEDPIQGVANEVEVQGVAHEDAVQGIANEDAAHGI--ANEDA 1349
Query: 199 NQ 200
Q
Sbjct: 1350 AQ 1351
Score = 30.0 bits (66), Expect = 1.9
Identities = 50/207 (24%), Positives = 71/207 (34%), Gaps = 29/207 (14%)
Query: 18 ALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGS 77
A+ G A D E G++N + G A + GI H E G++N +
Sbjct: 1421 AVQGIANEDAAHGIANEVAAHGIANEDAAQGIANEDAAQGIAH-----EDAVQGIANEDA 1475
Query: 78 HTGKELDKGVQGLN-----HGMDK--VAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEA 130
G + G+ H + K A I + + G E + G+ N G
Sbjct: 1476 VHGVAKEVAAHGVANEDAAHAIAKPDAARGIANEVATQGIATEDVADGIANEDAAHGVAN 1535
Query: 131 DKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQG-----------AHHAAGQ 179
+ A QG V G E QGV G E QG A+ A Q
Sbjct: 1536 EVAAQGIANEVAVHGVAIEDAVQGVVKEVTAHGVANEDAVQGVVNEDALHSVVANEDAAQ 1595
Query: 180 AGKELQNAHNGVNQ------ASKEANQ 200
A + AH N+ A+K+A Q
Sbjct: 1596 AIAKPDAAHGIANEVAAHSIANKDAAQ 1622
Score = 30.0 bits (66), Expect = 1.9
Identities = 43/184 (23%), Positives = 63/184 (34%), Gaps = 30/184 (16%)
Query: 38 RGLSNAEREVGKALDGINSGITHA----GREVEKVFNGLSNMGSHTGKELDKGVQGL--- 90
RG++N G A + + GI + G E G++N + G ++ VQG+
Sbjct: 1504 RGIANEVATQGIATEDVADGIANEDAAHGVANEVAAQGIANEVAVHGVAIEDAVQGVVKE 1563
Query: 91 --NHGM-----------DKVAHEI--NHGIGQA--------GKEAEKLGHGVNNAAGQAG 127
HG+ + H + N QA G E H + N G
Sbjct: 1564 VTAHGVANEDAVQGVVNEDALHSVVANEDAAQAIAKPDAAHGIANEVAAHSIANKDAAQG 1623
Query: 128 KEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNA 187
A QG V G E QG+ + G E QG H G ++A
Sbjct: 1624 IANQDAAQGIANEVAAHGISKEDAVQGIANEDAAQGIANEDAAQGIAHEDAVQGIANEDA 1683
Query: 188 HNGV 191
+GV
Sbjct: 1684 VHGV 1687
Score = 28.9 bits (63), Expect = 4.3
Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 7/169 (4%)
Query: 38 RGLSNAEREVGKALDGINSGITHA----GREVEKVFNGLSNMGSHTGKELDKGVQGLNHG 93
+G++N + G A + GI + G E +G++N G + VQG+ +
Sbjct: 716 QGIANEDAAQGIAHEDAVQGIANEDAVHGVAKEVAAHGVANEDPVQGVANEDVVQGVANE 775
Query: 94 MDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQ 153
++ I H G E HG+ N G + A QG G E
Sbjct: 776 VE--VQGIAHEDAVQGIANEDAAHGIANEVAAHGVANEDAAQGVANEDAAQGVANEDAVH 833
Query: 154 GVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQLL 202
GV + G E G + G + A +GV A+++A Q +
Sbjct: 834 GVANEDAAQGVAKEVTAHGVTNEDAVQGVVNEEALHGV-VANEDAAQAI 881
Score = 28.5 bits (62), Expect = 5.6
Identities = 49/206 (23%), Positives = 73/206 (35%), Gaps = 36/206 (17%)
Query: 24 ASDDPIEKVIEGIN-RGLSN--AEREVGK--ALDGINSGITHAGREVEKVFNGLSNMGSH 78
A++D + V + + G++N A + K A GI + + G E V +G++N +
Sbjct: 475 ANEDAVHGVAKEVAAHGVANKDAAHAIAKPDAARGIANEVAAQGIATEDVADGIANEDAV 534
Query: 79 TGKELDKGVQGLNHGMDKVAHEIN-----HGIGQA-------------GKEAEKLGHGVN 120
G + G+ + + AH I HGI G E HGV
Sbjct: 535 HGVANEVAAHGVAN--EDAAHAIAKPDAAHGIANEVATQGIATEDVADGIANEDAAHGVA 592
Query: 121 NAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQG-------- 172
N G + AVQG G E QG+ G E QG
Sbjct: 593 NEVAVHGVAIEDAVQGVANEDAVHGVANEDAAQGIAKEVTAHGVANEDAVQGVVNEDALH 652
Query: 173 ---AHHAAGQAGKELQNAHNGVNQAS 195
A+ A QA + AH N+ +
Sbjct: 653 GVVANEDAAQAIAKPDAAHGIANEVA 678
Score = 28.1 bits (61), Expect = 7.4
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 92 HGM--DKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAE 149
HG+ + + + + G E HGV N G + A QG V G E
Sbjct: 66 HGITNEDAVQGVANEVAAQGVANEDAAHGVANEVAAHGVANEDAAQGVANEVAAQGVANE 125
Query: 150 KLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQ 200
QGV + G E QG + G ++A G+ A+++A Q
Sbjct: 126 DAVQGVANEDAVQGVANEDAVQGIANEDAAHGIANEDAAQGI--ANEDAAQ 174
Score = 28.1 bits (61), Expect = 7.4
Identities = 39/164 (23%), Positives = 59/164 (35%), Gaps = 7/164 (4%)
Query: 39 GLSNAEREVGKALDGINSGITHA----GREVEKVFNGLSNMGSHTGKELDKGVQGLNHGM 94
G++N G A + + GI + G E +G++N + G + + G+
Sbjct: 337 GIANEVATQGIATEDVADGIANEDAAHGVAKEVTAHGVANEDAVQGVVNEDALHGVVANE 396
Query: 95 DKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQG 154
D A I G E HG+ N G + A G G E QG
Sbjct: 397 D-AAQAIAKPDAAHGIANEVAAHGIANEDAAQGIANEVAAHGISKEDAVQGIANEDAAQG 455
Query: 155 VNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEA 198
+ H G E QG + G + A +GV A+K+A
Sbjct: 456 IAHEDAAQGIAHEDAVQGIANEDAVHGVAKEVAAHGV--ANKDA 497
>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
[Homo sapiens]
Length = 730
Score = 40.0 bits (92), Expect = 0.002
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 36 INRGLSNAER--EVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHG 93
IN LSNA + E+ G G + G +E++ G+ +G G +++ GL HG
Sbjct: 372 INEILSNALKRGEIIAKQGGGGGGGSVPG--IERMGPGIDRLG---GAGMERMGAGLGHG 426
Query: 94 MDKVAHEINHG--IGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKL 151
MD+V EI + E++G G+ +++ + + G E++
Sbjct: 427 MDRVGSEIERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQTMERIGSGVERM 486
Query: 152 GQGVNHAADQAGKEVEKLGQ 171
G G+ ++ ++++GQ
Sbjct: 487 GAGMGFGLERMAAPIDRVGQ 506
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 20/137 (14%)
Query: 36 INRGLSNAE-REVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGM 94
+N+G+ G ++GI GI G G+ NMG G+N G
Sbjct: 320 LNKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGGGMENMGRFGS--------GMNMGR 371
Query: 95 DKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEA-EKLGQ 153
I + A K G + G G + ++ G+ + G E++G
Sbjct: 372 ----------INEILSNALKRGEIIAKQGGGGGGGSVPGIERMGPGIDRLGGAGMERMGA 421
Query: 154 GVNHAADQAGKEVEKLG 170
G+ H D+ G E+E++G
Sbjct: 422 GLGHGMDRVGSEIERMG 438
Score = 36.2 bits (82), Expect = 0.027
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 22/139 (15%)
Query: 36 INRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMD 95
+ R S ER LD + S I G+ +E++ +G+ MG+ G+ G++
Sbjct: 447 VERMGSGIERMGPLGLDHMASSIERMGQTMERIGSGVERMGA-----------GMGFGLE 495
Query: 96 KVAHEINHGIGQAGKEAEKLGHGVNN---AAGQAGKEADKAV-QGFHTGVHQAGKEAEKL 151
++A I+ + G+ E++G GV A + G ++ V G G+ + G +++
Sbjct: 496 RMAAPID----RVGQTIERMGSGVERMGPAIERMGLSMERMVPAGMGAGLERMGPVMDRM 551
Query: 152 GQGVNHAADQAGKEVEKLG 170
G+ +E++G
Sbjct: 552 ATGLER---MGANNLERMG 567
Score = 28.9 bits (63), Expect = 4.3
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 28 PIEKVIEGINRGLSNAEREVGKALD------------GINSGITHAGREVEKVFNGLSNM 75
PI++V + I R S ER +G A++ G+ +G+ G ++++ GL M
Sbjct: 500 PIDRVGQTIERMGSGVER-MGPAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERM 558
Query: 76 GSHTGKELDKGVQGLNH----GMDKVAHEINHGIGQAGKEAEKLGHGVNN----AAGQAG 127
G++ + + G N G++++ +G A A LG G+ G G
Sbjct: 559 GANNLERMGLERMGANSLERMGLERMGANSLERMGPAMGPA--LGAGIERMGLAMGGGGG 616
Query: 128 KEADKAVQ 135
D+A++
Sbjct: 617 ASFDRAIE 624
>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
[Homo sapiens]
Length = 691
Score = 40.0 bits (92), Expect = 0.002
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 36 INRGLSNAER--EVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHG 93
IN LSNA + E+ G G + G +E++ G+ +G G +++ GL HG
Sbjct: 333 INEILSNALKRGEIIAKQGGGGGGGSVPG--IERMGPGIDRLG---GAGMERMGAGLGHG 387
Query: 94 MDKVAHEINHG--IGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKL 151
MD+V EI + E++G G+ +++ + + G E++
Sbjct: 388 MDRVGSEIERMGLVMDRMGSVERMGSGIERMGPLGLDHMASSIERMGQTMERIGSGVERM 447
Query: 152 GQGVNHAADQAGKEVEKLGQ 171
G G+ ++ ++++GQ
Sbjct: 448 GAGMGFGLERMAAPIDRVGQ 467
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 20/137 (14%)
Query: 36 INRGLSNAE-REVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGM 94
+N+G+ G ++GI GI G G+ NMG G+N G
Sbjct: 281 LNKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGGGMENMGRFGS--------GMNMGR 332
Query: 95 DKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEA-EKLGQ 153
I + A K G + G G + ++ G+ + G E++G
Sbjct: 333 ----------INEILSNALKRGEIIAKQGGGGGGGSVPGIERMGPGIDRLGGAGMERMGA 382
Query: 154 GVNHAADQAGKEVEKLG 170
G+ H D+ G E+E++G
Sbjct: 383 GLGHGMDRVGSEIERMG 399
Score = 36.2 bits (82), Expect = 0.027
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 22/139 (15%)
Query: 36 INRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMD 95
+ R S ER LD + S I G+ +E++ +G+ MG+ G+ G++
Sbjct: 408 VERMGSGIERMGPLGLDHMASSIERMGQTMERIGSGVERMGA-----------GMGFGLE 456
Query: 96 KVAHEINHGIGQAGKEAEKLGHGVNN---AAGQAGKEADKAV-QGFHTGVHQAGKEAEKL 151
++A I+ + G+ E++G GV A + G ++ V G G+ + G +++
Sbjct: 457 RMAAPID----RVGQTIERMGSGVERMGPAIERMGLSMERMVPAGMGAGLERMGPVMDRM 512
Query: 152 GQGVNHAADQAGKEVEKLG 170
G+ +E++G
Sbjct: 513 ATGLER---MGANNLERMG 528
Score = 28.9 bits (63), Expect = 4.3
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 28 PIEKVIEGINRGLSNAEREVGKALD------------GINSGITHAGREVEKVFNGLSNM 75
PI++V + I R S ER +G A++ G+ +G+ G ++++ GL M
Sbjct: 461 PIDRVGQTIERMGSGVER-MGPAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERM 519
Query: 76 GSHTGKELDKGVQGLNH----GMDKVAHEINHGIGQAGKEAEKLGHGVNN----AAGQAG 127
G++ + + G N G++++ +G A A LG G+ G G
Sbjct: 520 GANNLERMGLERMGANSLERMGLERMGANSLERMGPAMGPA--LGAGIERMGLAMGGGGG 577
Query: 128 KEADKAVQ 135
D+A++
Sbjct: 578 ASFDRAIE 585
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 39.3 bits (90), Expect = 0.003
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 10/155 (6%)
Query: 62 GREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKE-AEKLGHGVN 120
G E E + G G G+E +G G + G + G+E E+ G G
Sbjct: 948 GEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEE 1007
Query: 121 NAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQA 180
G+ +E + V+G G+E E G+G ++ G+E EK G+G + +
Sbjct: 1008 EGEGEGEEEEEGEVEG-----EVEGEEGE--GEGEEEEGEEEGEEREKEGEGEENRRNR- 1059
Query: 181 GKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQG 215
+E + + +E N+ +G S +G
Sbjct: 1060 -EEEEEEEGKYQETGEEENERQDGEEYKKVSKIKG 1093
Score = 37.7 bits (86), Expect = 0.009
Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 8/179 (4%)
Query: 39 GLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVA 98
G E GK G G G E E G G E++ G G +
Sbjct: 773 GERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEK---EEGGEVEGGEVEEGKGEREEE 829
Query: 99 HEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHA 158
E G + G+ E+ G G G+E + +G G G+ E+ G+G
Sbjct: 830 EEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEE 889
Query: 159 ADQA-GKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGG 216
+ G+E E G+G G+ G+E + G + + + G + G + G
Sbjct: 890 EGEGEGEEEEGEGEGEEEGEGE-GEEEEGEGKGEEEGEEGEGE---GEEEEGEGEGEDG 944
Score = 35.0 bits (79), Expect = 0.060
Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 15/178 (8%)
Query: 38 RGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKV 97
+G E E G+ + G G E+ G G+ ++G +G G ++
Sbjct: 823 KGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEE 882
Query: 98 AHEINHGIGQA-GKEAEKLGHGVNNAAGQA------GKEADKAVQGFHTGVHQAGK-EAE 149
G+ G+E E G G G+ GK ++ +G G + G+ E E
Sbjct: 883 GEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGE 942
Query: 150 K-LGQGVNHAADQAGKEVEKLGQGAHHAAGQA------GKELQNAHNGVNQASKEANQ 200
G+G + G+E E G+G G+ G+E + G + +E +
Sbjct: 943 DGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGE 1000
Score = 28.1 bits (61), Expect = 7.4
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 43 AEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEIN 102
AE+E K DG +E E+ N G E + G +G D+ E
Sbjct: 697 AEKEEWKKRDGEEQ----EQKEREQGHQKERNQEMEEGGEEEHG-EGEEEEGDREEEEEK 751
Query: 103 HGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQA 162
G G+ E E++ G+ KE + + G + G+E G+G +
Sbjct: 752 EGEGKEEGEGEEV-------EGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGR 804
Query: 163 GKEVEKLGQ 171
G+E E+ G+
Sbjct: 805 GEEKEEGGE 813
>gi|171916097 repetin [Homo sapiens]
Length = 784
Score = 38.9 bits (89), Expect = 0.004
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 2/134 (1%)
Query: 82 ELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGV 141
++D+ QG ++G + +H GQ ++ + +G + GQ+ QG +
Sbjct: 417 QMDRQGQGSHYGQTDRQGQSSH-YGQPDRQGQNSHYGQTDRQGQSSHYGQTDRQGQSSHY 475
Query: 142 HQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQL 201
Q K+ + G DQ+ + GQG GQ ++ Q+ H G +++
Sbjct: 476 SQPDKQGQSSHYGKIDRQDQSYHYGQPDGQGQSSHYGQTDRQGQSFHYGQPDRQGQSSHY 535
Query: 202 LNGNHQSGSSSHQG 215
+ Q G SSH G
Sbjct: 536 SQMDRQ-GQSSHYG 548
Score = 37.4 bits (85), Expect = 0.012
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 76 GSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAG--KEADKA 133
GSH + +G Q ++G + +H GQ ++ + +G GQ+ + D+
Sbjct: 364 GSHYSQPNRQG-QSSHYGQPDTQDQSSH-YGQTDRQDQSSHYGQTERQGQSSHYSQMDRQ 421
Query: 134 VQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQ 193
QG H G + ++ GQ ++ + ++ GQ +H+ GQ ++ Q++H G
Sbjct: 422 GQGSHYG------QTDRQGQSSHYG------QPDRQGQNSHY--GQTDRQGQSSHYGQTD 467
Query: 194 ASKEANQLLNGNHQSGSSSHQG 215
+++ + Q G SSH G
Sbjct: 468 RQGQSSHYSQPDKQ-GQSSHYG 488
Score = 36.6 bits (83), Expect = 0.021
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 76 GSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAG--KEADKA 133
GSH G + D+ Q ++G + +H GQ ++ + +G + GQ+ + DK
Sbjct: 424 GSHYG-QTDRQGQSSHYGQPDRQGQNSH-YGQTDRQGQSSHYGQTDRQGQSSHYSQPDKQ 481
Query: 134 VQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQ 193
Q H G ++ GQ + ++ GQ H+ GQ ++ Q++H +Q
Sbjct: 482 GQSSHYGKIDRQDQSYHYGQPDGQGQSSHYGQTDRQGQSFHY--GQPDRQGQSSH--YSQ 537
Query: 194 ASKEANQLLNG-NHQSGSSSHQG 215
++ G + G SSH G
Sbjct: 538 MDRQGQSSHYGQTDRQGQSSHYG 560
Score = 35.4 bits (80), Expect = 0.046
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 77 SHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAG--KEADKAV 134
SH GK +D+ Q ++G + +H GQ ++ + +G + GQ+ + D+
Sbjct: 485 SHYGK-IDRQDQSYHYGQPDGQGQSSH-YGQTDRQGQSFHYGQPDRQGQSSHYSQMDRQG 542
Query: 135 QGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGK-ELQNAHNGVNQ 193
Q H G ++ GQ + ++ GQ +H+ Q G+ + QN + +
Sbjct: 543 QSSHYGQTDRQGQSSHYGQTDRQGQSYHYGQTDRQGQSSHYIQSQTGEIQGQNKYFQGTE 602
Query: 194 ASKEANQLLNGNHQSGSS 211
+++A+ + QSG S
Sbjct: 603 GTRKASYV----EQSGRS 616
Score = 32.0 bits (71), Expect = 0.51
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 77 SHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGK--EADKAV 134
SH G + D+ Q ++ + +H G+ ++ + +G + GQ+ + D+
Sbjct: 461 SHYG-QTDRQGQSSHYSQPDKQGQSSH-YGKIDRQDQSYHYGQPDGQGQSSHYGQTDRQG 518
Query: 135 QGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQA 194
Q FH G + ++ GQ +++ ++++ GQ +H+ GQ ++ Q++H G Q
Sbjct: 519 QSFHYG------QPDRQGQSSHYS------QMDRQGQSSHY--GQTDRQGQSSHYG--QT 562
Query: 195 SKEANQLLNG-NHQSGSSSH 213
++ G + G SSH
Sbjct: 563 DRQGQSYHYGQTDRQGQSSH 582
Score = 28.9 bits (63), Expect = 4.3
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 106 GQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGK- 164
GQ ++ + + N GQ + QG + Q + + G DQ+
Sbjct: 344 GQMDRKGQCYHYDQTNRQGQGSHYSQPNRQGQSSHYGQPDTQDQSSHYGQTDRQDQSSHY 403
Query: 165 -EVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQG 215
+ E+ GQ +H++ Q ++ Q +H G +++ + Q G +SH G
Sbjct: 404 GQTERQGQSSHYS--QMDRQGQGSHYGQTDRQGQSSHYGQPDRQ-GQNSHYG 452
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 37.7 bits (86), Expect = 0.009
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 7/137 (5%)
Query: 71 GLSNMGSHTGKELDKGVQGLNHGMDKVAHE--INHGIGQAGKEAEKLGHGVNNAAGQAGK 128
G SN G +G + G N + + + G G G N+ G G
Sbjct: 240 GSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNSGGSRGD 299
Query: 129 EADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAH 188
++ G TG G G ++ G E G+ +G G Q
Sbjct: 300 SGSESSWGSSTGSSSGNHGGSGGGNGHKPGCEKPGNEARGSGE-----SGIQGFRGQGVS 354
Query: 189 NGVNQASKEANQLLNGN 205
+ + + SKE N+LL G+
Sbjct: 355 SNMREISKEGNRLLGGS 371
Score = 31.2 bits (69), Expect = 0.87
Identities = 54/252 (21%), Positives = 83/252 (32%), Gaps = 50/252 (19%)
Query: 16 LGALSGWAASDDPIEKVIEGINRGLSNAEREVGK--ALDGINSGITHAGREVEKVFNGLS 73
+G +G AA E + +G + R+V A D + G V + + L
Sbjct: 55 IGKEAGGAAGSKVSEALGQGTREAVGTGVRQVPGFGAADAL-------GNRVGEAAHALG 107
Query: 74 NMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKA 133
N G G++ + ++ HG D V G G GHG+ + G G +
Sbjct: 108 NTGHEIGRQAEDVIR---HGADAVRGSWQGVPGHNGAWETSGGHGIFGSQGGLGGQGQGN 164
Query: 134 VQGFHT-----------GVHQAGKEAEKLGQGVNHAADQAGKE----VEKLGQGAHHAAG 178
G T G + GQG N G V + G G+ A+
Sbjct: 165 PGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYGSVRASN 224
Query: 179 Q--------------------AGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGAT 218
Q G Q+ +G N +G SGSSS G +
Sbjct: 225 QNEGCTNPPPSGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSS---GGS 281
Query: 219 TTPLASGASVNT 230
+ + G+S N+
Sbjct: 282 SGGSSGGSSGNS 293
>gi|239746652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1513
Score = 36.6 bits (83), Expect = 0.021
Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 7/168 (4%)
Query: 24 ASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKEL 83
A++D + + E +G++N E A GIT+ E G++N + G
Sbjct: 1179 ATEDVADGIAEDAVQGITNEEAAQAIAKQDAAHGITN-----EDAAQGVTNEVAAQGVAN 1233
Query: 84 DKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQ 143
+ G+ + + AH + + G E GV N G + AVQG V
Sbjct: 1234 EDAAHGVAN--EVAAHGVANEDAAQGVANEVAAQGVANEDAVHGVANEDAVQGVANEVEV 1291
Query: 144 AGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
G + QG+ + G E QG + G ++A +GV
Sbjct: 1292 QGIAHKDAIQGIANEDAAQGVANEDAAQGVANEVAAHGVANEDAAHGV 1339
Score = 35.8 bits (81), Expect = 0.035
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 20/174 (11%)
Query: 18 ALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGS 77
AL G A++D + + + + G A +G+ + + G E V +G++ +
Sbjct: 290 ALHGVVANEDAAQAI--------AKPDSAHGIANEGVANEVAAQGIATEDVADGIAEDAA 341
Query: 78 HTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGF 137
H G ++ Q + AH I + G E HGV N + A QG
Sbjct: 342 H-GITNEEAAQAI--AKQDAAHSITNEDAVQGVANEDAAHGVAN---------EDAAQGI 389
Query: 138 HTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
V G E QG+ + G E QG H G ++A +GV
Sbjct: 390 ANEVATHGISKEDAVQGIANEDAAQGIANEDAAQGIAHEDAVQGIANEDAVHGV 443
Score = 35.8 bits (81), Expect = 0.035
Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 14/171 (8%)
Query: 25 SDDPIEKVI-EGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKEL 83
++D ++ V E G++N + A GI + + G E G++N + G
Sbjct: 364 NEDAVQGVANEDAAHGVANED-----AAQGIANEVATHGISKEDAVQGIANEDAAQGIAN 418
Query: 84 DKGVQGLNH--GMDKVAHE-INHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTG 140
+ QG+ H + +A+E HG+ + E HGV N G + AVQG
Sbjct: 419 EDAAQGIAHEDAVQGIANEDAVHGVAK-----EVAAHGVANEDPVQGVANEDAVQGVANE 473
Query: 141 VHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
V G E QG+ + G E G + G ++A G+
Sbjct: 474 VEVQGVAHEDAVQGIANEDAAHGIANEVAAHGIANEDAAQGIANEDAAQGI 524
Score = 35.8 bits (81), Expect = 0.035
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 13/161 (8%)
Query: 34 EGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNH- 92
E +G++N + A GI + + G E G++N + G + QG+ H
Sbjct: 681 EDAAQGIANED-----AAQGIANEVAAHGISKEDAVQGIANEDAAQGIANEDAAQGIAHE 735
Query: 93 -GMDKVAHE-INHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEK 150
+ +A+E HG+ + E HGV N G + AVQG V G E
Sbjct: 736 DAVQGIANEDAVHGVAK-----EVAAHGVANEDPVQGVANEDAVQGVANEVEVQGVAHED 790
Query: 151 LGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
QG+ + G E G + G ++A G+
Sbjct: 791 AVQGIANEDAAHGITNEVAAHGIANEDAAQGIANEDAAQGI 831
Score = 35.4 bits (80), Expect = 0.046
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 8/173 (4%)
Query: 34 EGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSN--MGSHTGKELDKGV--QG 89
E + ++ + G A +G+ + + G E V +G++ + T +E + + Q
Sbjct: 1149 EDAAQAIAKPDAAHGIANEGVANEVAAQGIATEDVADGIAEDAVQGITNEEAAQAIAKQD 1208
Query: 90 LNHGM--DKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKE 147
HG+ + A + + + G E HGV N G + A QG V G
Sbjct: 1209 AAHGITNEDAAQGVTNEVAAQGVANEDAAHGVANEVAAHGVANEDAAQGVANEVAAQGVA 1268
Query: 148 AEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQ 200
E GV + G E QG H G ++A GV A+++A Q
Sbjct: 1269 NEDAVHGVANEDAVQGVANEVEVQGIAHKDAIQGIANEDAAQGV--ANEDAAQ 1319
Score = 31.6 bits (70), Expect = 0.67
Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 9/149 (6%)
Query: 18 ALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGS 77
A G A D + E +G++ + G A + G+ + E G++N
Sbjct: 971 AAQGIANEDAAQDIANEDAAQGIAKEDPVQGVANEDPVQGVAN-----EDAVQGVANEVE 1025
Query: 78 HTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGF 137
G + VQG+ + + AH I + + G E G+ N G + AVQG
Sbjct: 1026 VQGVAHEDAVQGIAN--EDAAHGIANEVAAHGIANEDAAQGIANEDAAQGIAHEDAVQGI 1083
Query: 138 --HTGVHQAGKEAEKLGQGVNHAADQAGK 164
VH KE G AA K
Sbjct: 1084 ANEDAVHGVAKEVAAHGVANEDAAHAIAK 1112
Score = 31.2 bits (69), Expect = 0.87
Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%)
Query: 70 NGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKE 129
+G++N + G + QG+ + + AH + + + G E GV N G
Sbjct: 139 HGITNEDAVQGVANEVAAQGVAN--EDAAHGVANEVAAHGVANEDAAQGVANEVAAQGVA 196
Query: 130 ADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHN 189
+ A QG G E G+ + G E QG + G ++A +
Sbjct: 197 NEDAAQGVANEDAVQGVANEDAAHGIANEVAAHGVANEDAAQGVANEDAAQGVANEDAVH 256
Query: 190 GVNQASKEANQ 200
GV A+++A Q
Sbjct: 257 GV--ANEDAAQ 265
Score = 29.3 bits (64), Expect = 3.3
Identities = 55/247 (22%), Positives = 91/247 (36%), Gaps = 45/247 (18%)
Query: 24 ASDDPIEKVIEGIN-RGLSNAEREVGKALDGINSGITHA----GREVEKVFNGLSNMGSH 78
A++D ++ V + +G+++ + G A + GIT+ G E G++N +
Sbjct: 769 ANEDAVQGVANEVEVQGVAHEDAVQGIANEDAAHGITNEVAAHGIANEDAAQGIANEDAA 828
Query: 79 TGKELDKGVQGLNH--GMDKVAHEIN-HGIGQA--------------------------- 108
G + VQG+ + + VA E+ HG+
Sbjct: 829 QGIAHEDAVQGIANEDAVHSVAKEVAAHGVANEDAAHAIAKPDAARGIANEVAAQGIATE 888
Query: 109 ----GKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGK 164
G E HGV N G + AVQG G E QGV + + G
Sbjct: 889 DVADGIANEDAAHGVANEVAAHGISKEDAVQGIANEDAAQGIAKEDPIQGVANEVEVQGV 948
Query: 165 EVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQ-LLNGNHQSGSSSH---QGGATTT 220
E QG + G ++A G+ A+++A Q + N + G + QG A
Sbjct: 949 AHEDAVQGIANEDAAHGIANEDAAQGI--ANEDAAQDIANEDAAQGIAKEDPVQGVANED 1006
Query: 221 PLASGAS 227
P+ A+
Sbjct: 1007 PVQGVAN 1013
Score = 28.1 bits (61), Expect = 7.4
Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 7/183 (3%)
Query: 39 GLSNAEREVGKALDGINSGITHA----GREVEKVFNGLSNMGSHTGKELDKGVQGLNHGM 94
G++N + G A + G+ + G E +G++N + G + QG+ +
Sbjct: 140 GITNEDAVQGVANEVAAQGVANEDAAHGVANEVAAHGVANEDAAQGVANEVAAQGVAN-- 197
Query: 95 DKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQG 154
+ A + + G E HG+ N G + A QG G E G
Sbjct: 198 EDAAQGVANEDAVQGVANEDAAHGIANEVAAHGVANEDAAQGVANEDAAQGVANEDAVHG 257
Query: 155 VNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQ 214
V + G E G + G Q A +GV A+++A Q + + +++
Sbjct: 258 VANEDAAQGVAKEVTAHGVTNEDAVQGVVNQEALHGV-VANEDAAQAIAKPDSAHGIANE 316
Query: 215 GGA 217
G A
Sbjct: 317 GVA 319
Score = 27.7 bits (60), Expect = 9.6
Identities = 41/169 (24%), Positives = 62/169 (36%), Gaps = 8/169 (4%)
Query: 24 ASDDPIEKVIEGIN-RGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKE 82
A +DPI+ V + +G+++ + G A + GI + E G++N +
Sbjct: 931 AKEDPIQGVANEVEVQGVAHEDAVQGIANEDAAHGIAN-----EDAAQGIANEDAAQDIA 985
Query: 83 LDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVH 142
+ QG+ D V N Q G E GV N G + AVQG
Sbjct: 986 NEDAAQGIAKE-DPVQGVANEDPVQ-GVANEDAVQGVANEVEVQGVAHEDAVQGIANEDA 1043
Query: 143 QAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGV 191
G E G+ + G E QG H G ++A +GV
Sbjct: 1044 AHGIANEVAAHGIANEDAAQGIANEDAAQGIAHEDAVQGIANEDAVHGV 1092
>gi|62122917 filaggrin family member 2 [Homo sapiens]
Length = 2391
Score = 35.8 bits (81), Expect = 0.035
Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 38/204 (18%)
Query: 48 GKALDGINSGITHAGREVEKVFNGLSNMGS-HTGKELDKGVQGLNHGMDKVAHEINHGIG 106
G+ D G G+ ++ GS H+ +G G++H H H G
Sbjct: 1924 GQTGDTTEHGHPSHGQTIQTGSRTTGRRGSGHSEYSDSEGPSGVSH-----THS-GHTHG 1977
Query: 107 QAGKEAEKLGHGVNNAAGQA-GKEADKAVQGFHTGVHQAGKEAEKLG------------- 152
QAG + G V+ G G+ AD G H+G Q+ + +
Sbjct: 1978 QAGSHYPESGSSVHERHGTTHGQTADTTRHG-HSGHGQSTQRGSRTTGRRASGHSEYSDS 2036
Query: 153 ---QGVNH-----AADQAGKEVEKLGQGAHH----AAGQAGKELQNAHNGVNQA----SK 196
GV+H A QAG + + G H GQ G ++AH+G Q+ S+
Sbjct: 2037 EGHSGVSHTHSGHAHGQAGSQHGESGSSVHERHGTTHGQTGDTTRHAHSGHGQSTQRGSR 2096
Query: 197 EANQLLNGNHQSGSSSHQGGATTT 220
A + +G+ +S S G + T
Sbjct: 2097 TAGRRGSGHSESSDSEVHSGVSHT 2120
Score = 34.7 bits (78), Expect = 0.079
Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 33/180 (18%)
Query: 42 NAEREVGKALDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGM--DKVAH 99
+++ EV +SG TH+ +G S H G QG HG D H
Sbjct: 2183 SSDSEVHSEASPTHSGHTHSQAGSR---HGQSGSSGH-------GRQGTTHGQTGDTTRH 2232
Query: 100 EINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAA 159
++G GQ+ + + G+ + + VH G H
Sbjct: 2233 A-HYGYGQSTQRGSRT----------TGRRGSGHSESSDSEVHSWGSHTHS-----GHIQ 2276
Query: 160 DQAGKEVEKLGQGAHHAA----GQAGKELQNAHNGVNQASKEANQLLNGNH-QSGSSSHQ 214
QAG + + G H GQ G ++ H+G Q+++ ++ +H QS SS Q
Sbjct: 2277 GQAGSQQRQPGSTVHGRLETTHGQTGDTTRHGHSGYGQSTQTGSRSSRASHFQSHSSERQ 2336
Score = 33.5 bits (75), Expect = 0.18
Identities = 35/157 (22%), Positives = 53/157 (33%), Gaps = 9/157 (5%)
Query: 62 GREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQA---GKEAEKLGHG 118
G+ + +G GS + + G G G + G GQ+ G+ + GH
Sbjct: 632 GQHGSRQTSGFGQHGSGSSQSTGFGQYGSGSGQSSGFGQHVSGSGQSSGFGQHESRSGHS 691
Query: 119 VNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAG 178
G ++ Q + +G +L G + + Q G G G G
Sbjct: 692 SYGQHGFGSSQSSGYGQHGSSSGQTSGFGQHELSSGQSSSFGQHGS-----GSGQSSGFG 746
Query: 179 QAGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQG 215
Q G +G Q + Q G H SGSS G
Sbjct: 747 QHGSG-SGQSSGFGQHESRSGQSSYGQHSSGSSQSSG 782
Score = 33.5 bits (75), Expect = 0.18
Identities = 42/182 (23%), Positives = 65/182 (35%), Gaps = 27/182 (14%)
Query: 41 SNAEREVGKALDGINSGITHA---GREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKV 97
S + + G G +SG T R ++G GS +G+ G G G
Sbjct: 850 SGSSQSSGYGQHGSSSGQTSGFGQHRSSSGQYSGFGQHGSGSGQSSGFGQHGTGSGQYS- 908
Query: 98 AHEINHGIGQAGKEAEKLGHGVNNAAGQA----GKEADKAVQGFHTGVHQAGKEAEKLGQ 153
G GQ + + +G + + G+ + Q F G H++G GQ
Sbjct: 909 ------GFGQHESRSHQSSYGQHGSGSSQSSGYGQHGSSSGQTFGFGQHRSGS-----GQ 957
Query: 154 GVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQLLNGNHQSGSSSH 213
+G + G G H + +GK +G Q ++Q G H SGSS
Sbjct: 958 SSGFGQHGSGSG-QSSGFGQHESG--SGKS-----SGFGQHESRSSQSNYGQHGSGSSQS 1009
Query: 214 QG 215
G
Sbjct: 1010 SG 1011
Score = 33.1 bits (74), Expect = 0.23
Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 9/157 (5%)
Query: 62 GREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNN 121
G+ + +G GS + + G G G + G GQ+ + +
Sbjct: 784 GQHGSRQTSGFGQHGSGSSQSTGFGQYGSGSGQSAGFGQHGSGSGQSSGFGQHESRSHQS 843
Query: 122 AAGQAGKEADKAVQGFHTGVHQAGKEAEK---LGQGVNHAADQAGKEVEKLGQGAHHAAG 178
+ GQ G + ++ +G Q G + + GQ + + +G G G G
Sbjct: 844 SYGQHGSGSSQS-----SGYGQHGSSSGQTSGFGQHRSSSGQYSGFGQHGSGSGQSSGFG 898
Query: 179 QAGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQG 215
Q G ++G Q ++Q G H SGSS G
Sbjct: 899 QHGTG-SGQYSGFGQHESRSHQSSYGQHGSGSSQSSG 934
Score = 31.6 bits (70), Expect = 0.67
Identities = 40/168 (23%), Positives = 59/168 (35%), Gaps = 25/168 (14%)
Query: 71 GLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQA---GKEAEKLG-------HG-V 119
G GS +GK G G G + G GQ+ G+ G HG V
Sbjct: 465 GYDQHGSSSGKTSGFGQHGSGSGQSSGFGQCGSGSGQSSGFGQHGSVSGQSSGFGQHGSV 524
Query: 120 NNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQ 179
+ + G+ ++ Q + G H +G ++ G G + + +G LG G GQ
Sbjct: 525 SGQSSGFGQHESRSRQSSY-GQHGSGS-SQSSGYGQYGSRETSGFGQHGLGSGQSTGFGQ 582
Query: 180 AGKELQNAH------------NGVNQASKEANQLLNGNHQSGSSSHQG 215
G + +G Q + Q G H SGSS G
Sbjct: 583 YGSGSGQSSGFGQHGSGSGQSSGFGQHESRSGQSSYGQHSSGSSQSSG 630
Score = 30.0 bits (66), Expect = 1.9
Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 16/159 (10%)
Query: 70 NGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQA-GKEAEKLGHGVNNAAGQAGK 128
+G GS +G+ G G + G GQ+ G + G G ++ GQ
Sbjct: 933 SGYGQHGSSSGQTFGFGQHRSGSGQSSGFGQHGSGSGQSSGFGQHESGSGKSSGFGQHES 992
Query: 129 EADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAH 188
+ ++ G H ++ GQ + + G + G + GQ G +
Sbjct: 993 RSSQSNYGQHGS---GSSQSSGYGQHGSSSGQTTGFGQHRSSSGQYSGFGQHGSGSDQSS 1049
Query: 189 ------------NGVNQASKEANQLLNGNHQSGSSSHQG 215
+G Q + Q G H SGSS G
Sbjct: 1050 GFGQHGTGSGQSSGFGQYESRSRQSSYGQHGSGSSQSSG 1088
Score = 30.0 bits (66), Expect = 1.9
Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 13/135 (9%)
Query: 88 QGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKE 147
QG HG HG G+ + G + Q +D H+GV
Sbjct: 1311 QGTTHGQR--GDTTRHGHSGHGQSTQT---GSRTSGRQRFSHSDATDSEVHSGVSHRPHS 1365
Query: 148 AEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEANQLL----N 203
E Q + A Q G+ + + GQ G+ + H+G Q+++ ++ +
Sbjct: 1366 QE---QTHSQAGSQHGESESTVHERHETTYGQTGEATGHGHSGHGQSTQRGSRTTGRRGS 1422
Query: 204 GNHQSGSSS-HQGGA 217
G+ +S S H GG+
Sbjct: 1423 GHSESSDSEVHSGGS 1437
Score = 28.5 bits (62), Expect = 5.6
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 8/137 (5%)
Query: 99 HEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEK-LGQGVNH 157
H H GQAG + E+ V+ G + H+G Q+ + + G+ +
Sbjct: 1593 HSREHTYGQAGSQHEEPEFTVHERHGTTHGQIGDTTGHSHSGHGQSTQRGSRTTGRQRSS 1652
Query: 158 AADQAGKEVEKLGQGAH--HAAGQAGKELQNAHNGVNQA-----SKEANQLLNGNHQSGS 210
++ + EV H H GQAG + + + V + + + + ++ G
Sbjct: 1653 HSESSDSEVHSGVSHTHTGHTHGQAGSQHGQSESIVPERHGTTHGQTGDTTRHAHYHHGL 1712
Query: 211 SSHQGGATTTPLASGAS 227
++ G TT SG S
Sbjct: 1713 TTQTGSRTTGRRGSGHS 1729
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 33.5 bits (75), Expect = 0.18
Identities = 47/181 (25%), Positives = 63/181 (34%), Gaps = 37/181 (20%)
Query: 37 NRGLSNAEREVGK-ALDGIN-----SGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGL 90
NRGL+ E EVG+ +DG+N +G+ GR+ EK G G D+G +GL
Sbjct: 1450 NRGLNGQEGEVGENGIDGLNGEQGDNGLP--GRKGEKGDEGSQGSPGKRGTPGDRGAKGL 1507
Query: 91 --NHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGF--HTGVH---- 142
+ G V I G G+ + G G G A G HTG
Sbjct: 1508 RGDPGAPGVDSSIEGPTGLKGERGRQGRRGWPGPPGTPGSRRKTAAHGRRGHTGPQGTAG 1567
Query: 143 ---------------------QAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAG 181
+AG + EK G G G E QG + G G
Sbjct: 1568 IPGPDGLEGSLGLKGPQGPRGEAGVKGEKGGVGSKGPQGPPGPGGEAGNQGRLGSQGNKG 1627
Query: 182 K 182
+
Sbjct: 1628 E 1628
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 33.1 bits (74), Expect = 0.23
Identities = 22/64 (34%), Positives = 29/64 (45%)
Query: 118 GVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAA 177
G AAG+ GK ++ V G V AGK+ E QG A AG+ E+ G+
Sbjct: 584 GPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQ 643
Query: 178 GQAG 181
G G
Sbjct: 644 GLPG 647
Score = 30.4 bits (67), Expect = 1.5
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 106 GQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKE 165
G AG++ G A GQAG +G + GK E+ G A AGK+
Sbjct: 557 GPAGQDGRPGPPGPPGARGQAGVMGFPGPKG---AAGEPGKAGERGVPGPPGAVGPAGKD 613
Query: 166 VEKLGQGAHHAAGQAGK 182
E QG AG AG+
Sbjct: 614 GEAGAQGPPGPAGPAGE 630
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 33.1 bits (74), Expect = 0.23
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 120 NNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQ 179
N+ G+ GK+ +K Q +A A KLG + K + LG H G+
Sbjct: 486 NSNNGKNGKDKEKEKQRKEKDKTRADSVANKLGSFSKTLGIKLKKNMGGLGGLVHGKMGR 545
Query: 180 AGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGATTT 220
A N+ NG N S E + + GS G + +T
Sbjct: 546 A-----NSANGKNGDSAERGKEKKAKSRKGSKEESGASAST 581
>gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [Homo
sapiens]
Length = 340
Score = 32.7 bits (73), Expect = 0.30
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 87 VQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGK 146
V L +D +I G AG+E E G AAG G E +G + G
Sbjct: 91 VISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIG-ETGAVGKGEAEATGEGGS 149
Query: 147 EAEKLGQGVNHAADQ--AGKEVEKLGQGAHHAAGQAGK 182
+E G G A D+ +E + +GA G AG+
Sbjct: 150 ASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGE 187
>gi|169216749 PREDICTED: similar to Putative paraneoplastic
antigen-like protein 6B-like protein [Homo sapiens]
Length = 340
Score = 32.7 bits (73), Expect = 0.30
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 87 VQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGK 146
V L +D +I G AG+E E G AAG G E +G + G
Sbjct: 91 VISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIG-ETGAVGKGEAEATGEGGS 149
Query: 147 EAEKLGQGVNHAADQ--AGKEVEKLGQGAHHAAGQAGK 182
+E G G A D+ +E + +GA G AG+
Sbjct: 150 ASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGE 187
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 32.3 bits (72), Expect = 0.39
Identities = 24/88 (27%), Positives = 34/88 (38%)
Query: 109 GKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEK 168
G E E G +A G G EAD A G T +E+ G+G + AAD
Sbjct: 1982 GDEGEDSNEGTGSADGNDGYEADDAEGGDGTDPGTETEESMGGGEGNHRAADSQNSGEGN 2041
Query: 169 LGQGAHHAAGQAGKELQNAHNGVNQASK 196
G + + +E Q + QA +
Sbjct: 2042 TGAAESSFSQEVSREQQPSSASERQAPR 2069
>gi|19923838 solute carrier family 13 (sodium/sulfate symporters),
member 1 [Homo sapiens]
Length = 595
Score = 31.6 bits (70), Expect = 0.67
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 19 LSGWAASDDPIEKVI---EGINRGLSNAEREVGKALDGINSGITHAGREVEKVFNGLSNM 75
LS W ++ V+ E + + + NAE EV +G T+ G E+++ NG
Sbjct: 134 LSMWLSNTSTAAMVMPIAEAVVQQIINAEAEVEATQMTYFNGSTNHGLEIDESVNGHE-- 191
Query: 76 GSHTGKELDKGVQGLNHGMDKVAH--EINHGIGQAGKEAEKLGH 117
+ KE K V G N+ K++ E+ G K K GH
Sbjct: 192 -INERKEKTKPVPGYNNDTGKISSKVELEKNSGMRTKYRTKKGH 234
>gi|16262452 cingulin [Homo sapiens]
Length = 1203
Score = 31.6 bits (70), Expect = 0.67
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 78 HTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGF 137
+ +E + + ++ E G+ + G+E + L N A + GK+ +
Sbjct: 782 NASQEEEGSLAAAKRALEARLEEAQRGLARLGQEQQTL----NRALEEEGKQRE------ 831
Query: 138 HTGVHQAGK-EAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQN----AHNGVN 192
V + GK E E+ + ++ D+ KE+EK+G+ + A Q +L++ A V
Sbjct: 832 ---VLRRGKAELEEQKRLLDRTVDRLNKELEKIGEDSKQALQQLQAQLEDYKEKARREVA 888
Query: 193 QASKEA 198
A ++A
Sbjct: 889 DAQRQA 894
>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
Length = 386
Score = 31.2 bits (69), Expect = 0.87
Identities = 54/252 (21%), Positives = 83/252 (32%), Gaps = 50/252 (19%)
Query: 16 LGALSGWAASDDPIEKVIEGINRGLSNAEREVGK--ALDGINSGITHAGREVEKVFNGLS 73
+G +G AA E + +G + R+V A D + G V + + L
Sbjct: 55 IGKEAGGAAGSKVSEALGQGTREAVGTGVRQVPGFGAADAL-------GNRVGEAAHALG 107
Query: 74 NMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKA 133
N G G++ + ++ HG D V G G GHG+ + G G +
Sbjct: 108 NTGHEIGRQAEDVIR---HGADAVRGSWQGVPGHNGAWETSGGHGIFGSQGGLGGQGQGN 164
Query: 134 VQGFHT-----------GVHQAGKEAEKLGQGVNHAADQAGKE----VEKLGQGAHHAAG 178
G T G + GQG N G V + G G+ A+
Sbjct: 165 PGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYGSVRASN 224
Query: 179 Q--------------------AGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGAT 218
Q G Q+ +G N +G SGSSS G +
Sbjct: 225 QNEGCTNPPPSGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSS---GGS 281
Query: 219 TTPLASGASVNT 230
+ + G+S N+
Sbjct: 282 SGGSSGGSSGNS 293
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 31.2 bits (69), Expect = 0.87
Identities = 54/252 (21%), Positives = 83/252 (32%), Gaps = 50/252 (19%)
Query: 16 LGALSGWAASDDPIEKVIEGINRGLSNAEREVGK--ALDGINSGITHAGREVEKVFNGLS 73
+G +G AA E + +G + R+V A D + G V + + L
Sbjct: 55 IGKEAGGAAGSKVSEALGQGTREAVGTGVRQVPGFGAADAL-------GNRVGEAAHALG 107
Query: 74 NMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKA 133
N G G++ + ++ HG D V G G GHG+ + G G +
Sbjct: 108 NTGHEIGRQAEDVIR---HGADAVRGSWQGVPGHNGAWETSGGHGIFGSQGGLGGQGQGN 164
Query: 134 VQGFHT-----------GVHQAGKEAEKLGQGVNHAADQAGKE----VEKLGQGAHHAAG 178
G T G + GQG N G V + G G+ A+
Sbjct: 165 PGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYGSVRASN 224
Query: 179 Q--------------------AGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGAT 218
Q G Q+ +G N +G SGSSS G +
Sbjct: 225 QNEGCTNPPPSGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSS---GGS 281
Query: 219 TTPLASGASVNT 230
+ + G+S N+
Sbjct: 282 SGGSSGGSSGNS 293
>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
Length = 476
Score = 31.2 bits (69), Expect = 0.87
Identities = 54/252 (21%), Positives = 83/252 (32%), Gaps = 50/252 (19%)
Query: 16 LGALSGWAASDDPIEKVIEGINRGLSNAEREVGK--ALDGINSGITHAGREVEKVFNGLS 73
+G +G AA E + +G + R+V A D + G V + + L
Sbjct: 55 IGKEAGGAAGSKVSEALGQGTREAVGTGVRQVPGFGAADAL-------GNRVGEAAHALG 107
Query: 74 NMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKA 133
N G G++ + ++ HG D V G G GHG+ + G G +
Sbjct: 108 NTGHEIGRQAEDVIR---HGADAVRGSWQGVPGHNGAWETSGGHGIFGSQGGLGGQGQGN 164
Query: 134 VQGFHT-----------GVHQAGKEAEKLGQGVNHAADQAGKE----VEKLGQGAHHAAG 178
G T G + GQG N G V + G G+ A+
Sbjct: 165 PGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYGSVRASN 224
Query: 179 Q--------------------AGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQGGAT 218
Q G Q+ +G N +G SGSSS G +
Sbjct: 225 QNEGCTNPPPSGSGGGSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSS---GGS 281
Query: 219 TTPLASGASVNT 230
+ + G+S N+
Sbjct: 282 SGGSSGGSSGNS 293
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 31.2 bits (69), Expect = 0.87
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 146 KEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKELQNAHNGVNQASKEA------- 198
K+AE+ + DQA +EV +L Q G + G ++ SK+A
Sbjct: 2333 KQAEEQVEAARKDLDQAKEEVFRLPQEEEEGPGAGDESSCGTGGGTHRRSKKAKAPERPG 2392
Query: 199 ---NQLLNG--------NHQSGSSSHQGGATTTP 221
++ L G NH S+HQ +TTTP
Sbjct: 2393 TRVSERLRGARAETQGANHTPVISAHQTRSTTTP 2426
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 80 GKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHT 139
GK+ GV GL+ + G+ G EK +G+ G+AG + +K +G
Sbjct: 304 GKDGQNGVPGLDGQKGEA--------GRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAG 355
Query: 140 GVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAAGQAG 181
+ +AG E GV A G+ E +G+ A G G
Sbjct: 356 ELGEAGPSGE---PGVPGDAGMPGERGEAGHRGSAGALGPQG 394
Score = 30.0 bits (66), Expect = 1.9
Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 9/168 (5%)
Query: 51 LDGINSGITHAGREVEKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGI-GQAG 109
LDG G EK NGL + G + +KG +G + + G+ G AG
Sbjct: 314 LDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAG 373
Query: 110 KEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKL 169
E+ G +AG G + G G + +K G G +
Sbjct: 374 MPGERGEAGHRGSAGALGPQGPPGAPGVR------GFQGQKGSMGDPGLPGPQGLRGDVG 427
Query: 170 GQGAHHAAGQAGKELQNAHNGV--NQASKEANQLLNGNHQSGSSSHQG 215
+G AAG G + +G+ ++ + L+ +SGS G
Sbjct: 428 DRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGLVGPKGESGSRGELG 475
Score = 28.1 bits (61), Expect = 7.4
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 118 GVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEKLGQGAHHAA 177
G+ A G+AG ++ +GF G+ K GV + + G + G
Sbjct: 256 GIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLD 315
Query: 178 GQAGKELQNAHNGVNQASKEANQLLNGNHQSGSSSHQG 215
GQ G+ +N G K N L ++GS +G
Sbjct: 316 GQKGEAGRNGAPG----EKGPNGLPGLPGRAGSKGEKG 349
Score = 27.7 bits (60), Expect = 9.6
Identities = 20/87 (22%), Positives = 33/87 (37%)
Query: 105 IGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGK 164
+G+ G + G + G GK+ V G +AG+ +G N G+
Sbjct: 282 LGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGR 341
Query: 165 EVEKLGQGAHHAAGQAGKELQNAHNGV 191
K +G AG+ G+ + GV
Sbjct: 342 AGSKGEKGERGRAGELGEAGPSGEPGV 368
>gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]
Length = 1016
Score = 30.8 bits (68), Expect = 1.1
Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 7/152 (4%)
Query: 8 GSC-SLLLLLGALSGWAASDDPIEKVIEGINRGLSNAEREVGKALDGINSGITHAGREVE 66
G C SL LG L G D + ++G+ GLS + L N+ +E
Sbjct: 718 GQCPSLEGRLGRLEGVCERLDTVAGGLQGLREGLSRHVAGLWAGLRETNTTSQMQAALLE 777
Query: 67 KVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQA 126
K+ G + +G G L+ +Q L + +++ + G AG+ G+ G A
Sbjct: 778 KLVGGQAGLGRRLG-ALNSSLQLLEDRLHQLS--LKDLTGPAGEAGPPGPPGLQGPPGPA 834
Query: 127 GKEADKAVQGFHTGVHQAGKEAEKLGQGVNHA 158
G G + G + E QGV A
Sbjct: 835 GPPGSPGKDGQEGPIGPPGPQGE---QGVEGA 863
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 30.4 bits (67), Expect = 1.5
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 104 GIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAG 163
GIG G G G +G G + +K GF G+ G + +K QG+ Q+G
Sbjct: 800 GIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGF-PGLDMPGPKGDKGAQGLPGITGQSG 858
Query: 164 KEVEKLGQGAHHAAGQAGKE 183
QGA G G +
Sbjct: 859 LPGLPGQQGAPGIPGFPGSK 878
Score = 27.7 bits (60), Expect = 9.6
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 104 GIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQGFH-----TGVHQAGKEAEKLGQGVNHA 158
G+G G EK G+ G G DK +G G+ G EK QG+
Sbjct: 1015 GMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGF 1074
Query: 159 ADQAGKEVEKLGQGAHHAAGQAG 181
G++ EK G G G
Sbjct: 1075 PGSPGEKGEKGSIGIPGMPGSPG 1097
>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
Length = 1119
Score = 30.4 bits (67), Expect = 1.5
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 81 KELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQG 136
++L G +GL+ V E +G+ G E K G NAAG G+ A+ + G
Sbjct: 594 EDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHG 649
>gi|20070376 solute carrier family 38, member 10 isoform b [Homo
sapiens]
Length = 780
Score = 30.4 bits (67), Expect = 1.5
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 81 KELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQAGKEADKAVQG 136
++L G +GL+ V E +G+ G E K G NAAG G+ A+ + G
Sbjct: 594 EDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHG 649
>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
Length = 1088
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 109 GKEAEKLGHGVNNAAGQAGKEADKAVQGFHTGVHQAGKEAEKLGQGVNHAADQAGKEVEK 168
G+EA + G G+EA+ A G G G+EA G A +G E
Sbjct: 298 GEEARTISGGEEAETASGGEEAETASGGEEAGTASGGEEAGIASGG--EAGTASGGEEAG 355
Query: 169 LGQGAHHAAGQAGKE 183
G A +GKE
Sbjct: 356 TASGGDEAWTTSGKE 370
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 30.0 bits (66), Expect = 1.9
Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 24/146 (16%)
Query: 66 EKVFNGLSNMGSHTGKELDKGVQGLNHGMDKVAHEINHGIGQAGKEAEKLGHGVNNAAGQ 125
++ N ++N G H K ++ + LNH ++H I + GK + L
Sbjct: 1728 DQAANLMANRGDHCRKLVEPQISELNHRFAAISHRI-----KTGKASIPL---------- 1772
Query: 126 AGKEADKAVQGFHTGVHQAGKEAE-KLGQGVNHAADQAGKEVEKLGQGAHHAAGQAGKEL 184
K ++ F++ + + + E ++ QGVN + K++ + +G Q G L
Sbjct: 1773 ------KELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQRGDNL 1826
Query: 185 QN--AHNGVNQASKEANQLLNGNHQS 208
Q + K QLL H +
Sbjct: 1827 QQRITDERKREEIKIKQQLLQTKHNA 1852
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,055,130
Number of Sequences: 37866
Number of extensions: 398574
Number of successful extensions: 1729
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1368
Number of HSP's gapped (non-prelim): 260
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.