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Search of human proteins with 38257153
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38257153 protein tyrosine phosphatase-like (proline instead
of catalytic arginine), member b [Homo sapiens]
(254 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38257153 protein tyrosine phosphatase-like (proline instead o... 507 e-144
gi|82659105 protein tyrosine phosphatase-like, member A [Homo sa... 325 2e-89
gi|117168248 protein tyrosine phosphatase-like A domain containi... 111 7e-25
gi|148226324 protein tyrosine phosphatase-like A domain containi... 99 4e-21
gi|27262624 ATP-binding cassette, sub-family A , member 5 [Homo ... 36 0.037
gi|27262626 ATP-binding cassette, sub-family A , member 5 [Homo ... 36 0.037
gi|223671856 coiled-coil domain containing 85C [Homo sapiens] 34 0.14
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 34 0.14
gi|51948366 ribonucleoprotein, PTB-binding 2 [Homo sapiens] 33 0.24
gi|126090909 engrailed homeobox 1 [Homo sapiens] 33 0.31
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 33 0.31
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 33 0.31
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 33 0.31
gi|4506783 Sin3A-associated protein, 30kDa [Homo sapiens] 32 0.41
gi|39995084 integrator complex subunit 3 [Homo sapiens] 32 0.53
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 32 0.53
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 32 0.53
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 32 0.53
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 32 0.70
gi|238859557 regulatory factor X1 [Homo sapiens] 31 0.91
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 31 0.91
gi|28269693 xylosyltransferase I [Homo sapiens] 31 1.2
gi|12056465 fibrillarin [Homo sapiens] 31 1.2
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 31 1.2
gi|25777645 small conductance calcium-activated potassium channe... 31 1.2
gi|209870086 F-box protein 28 isoform b [Homo sapiens] 30 1.6
gi|7662158 F-box protein 28 isoform a [Homo sapiens] 30 1.6
gi|4758392 forkhead box D1 [Homo sapiens] 30 1.6
gi|4503559 epithelial membrane protein 1 [Homo sapiens] 30 1.6
gi|122937440 multiple EGF-like-domains 9 [Homo sapiens] 30 1.6
>gi|38257153 protein tyrosine phosphatase-like (proline instead of
catalytic arginine), member b [Homo sapiens]
Length = 254
Score = 507 bits (1305), Expect = e-144
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MAAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGL 60
MAAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGL
Sbjct: 1 MAAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGL 60
Query: 61 VRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWA 120
VRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWA
Sbjct: 61 VRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWA 120
Query: 121 VTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGV 180
VTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGV
Sbjct: 121 VTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGV 180
Query: 181 SGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLILIMISYIPIFPQLYFHMIHQR 240
SGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLILIMISYIPIFPQLYFHMIHQR
Sbjct: 181 SGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLILIMISYIPIFPQLYFHMIHQR 240
Query: 241 RKILSHTEEHKKFE 254
RKILSHTEEHKKFE
Sbjct: 241 RKILSHTEEHKKFE 254
>gi|82659105 protein tyrosine phosphatase-like, member A [Homo
sapiens]
Length = 288
Score = 325 bits (834), Expect = 2e-89
Identities = 152/244 (62%), Positives = 196/244 (80%), Gaps = 3/244 (1%)
Query: 2 AAVAATAAAKGNGGGGGRAGAG-DASGTRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGL 60
AA A++ G GG AG +A G R++ G LATA+L Y++ MTAGWLV+A+ +
Sbjct: 37 AATMASSDEDGTNGGASEAGEDREAPGERRRLGV--LATAWLTFYDIAMTAGWLVLAIAM 94
Query: 61 VRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWA 120
VR Y+ KG++ LY SI+K LKFFQT ALLEI+HC IGIVP+SV++T QV SR+F++W
Sbjct: 95 VRFYMEKGTHRGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSVIVTGVQVSSRIFMVWL 154
Query: 121 VTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLLNHLPYLIKWARYTLFIVLYPMGV 180
+THS+K +Q+E+SV+LF++AWT+TEI RYSFYTFSLL+HLPY IKWARY FI+LYP+GV
Sbjct: 155 ITHSIKPIQNEESVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGV 214
Query: 181 SGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAFLILIMISYIPIFPQLYFHMIHQR 240
+GELLTIYAALP V++ G++SI LPNKYN SFDYY FL++ M SYIP+FPQLYFHM+ QR
Sbjct: 215 AGELLTIYAALPHVKKTGMFSIRLPNKYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQR 274
Query: 241 RKIL 244
RK+L
Sbjct: 275 RKVL 278
>gi|117168248 protein tyrosine phosphatase-like A domain containing
1 [Homo sapiens]
Length = 362
Score = 111 bits (277), Expect = 7e-25
Identities = 63/212 (29%), Positives = 115/212 (54%), Gaps = 10/212 (4%)
Query: 37 LATAYLVIYNVVMTAG--WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILH 94
L YL +YN+V G W+ + + + L K S++ ++++ + F Q A++E ++
Sbjct: 145 LRKGYLFMYNLVQFLGFSWIFVNLTVRFCILGKESFYDTFHTVADMMYFCQMLAVVETIN 204
Query: 95 CAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTF 154
AIG+ S V+ + Q++ R F+++ + +++E+Q++ V W+ EI RYSFY
Sbjct: 205 AAIGVTTSPVLPSLIQLLGRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEIFRYSFYML 264
Query: 155 SLLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPN----KYNF 210
+ ++ ++ W RYTL+I LYP+G E +++ ++P + G +S +LP K F
Sbjct: 265 TCIDMDWKVLTWLRYTLWIPLYPLGCLAEAVSVIQSIPIFNETGRFSFTLPYPVKIKVRF 324
Query: 211 SFDYYAFLILIMISYIPIFPQLYFHMIHQRRK 242
SF +LI+I + F LY QRR+
Sbjct: 325 SFFLQIYLIMIFLGLYINFRHLY----KQRRR 352
>gi|148226324 protein tyrosine phosphatase-like A domain containing
2 [Homo sapiens]
Length = 232
Score = 99.0 bits (245), Expect = 4e-21
Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 4/207 (1%)
Query: 40 AYLVIYNVVMTAG--WLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAI 97
AYL IY ++ G W+ + + K S +Y+I ++ Q+ +LLE+LH +
Sbjct: 18 AYLFIYYLIQFCGHSWIFTNMTVRFFSFGKDSMVDTFYAIGLVMRLCQSVSLLELLHIYV 77
Query: 98 GIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTFSLL 157
GI + ++ Q+ R+ +++ V S +EVQ + V + + W + +++RY++ S++
Sbjct: 78 GIESNHLLPRFLQLTERIIILFVVITSQEEVQEKYVVCVLFVFWNLLDMVRYTYSMLSVI 137
Query: 158 NHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNFSFDYYAF 217
++ W TL++ +YP+ V E IY +LP+ G YS LP + F Y
Sbjct: 138 GISYAVLTWLSQTLWMPIYPLCVLAEAFAIYQSLPYFESFGTYSTKLPFDLSIYFPYVLK 197
Query: 218 LILIMISYIPIFPQLYFHMIHQRRKIL 244
+ L+M+ F Y H+ +RR IL
Sbjct: 198 IYLMMLFIGMYF--TYSHLYSERRDIL 222
>gi|27262624 ATP-binding cassette, sub-family A , member 5 [Homo
sapiens]
Length = 1642
Score = 35.8 bits (81), Expect = 0.037
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 35 GPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILH 94
G L +AY + VV + +I + L GS + +Y + +F T L ++
Sbjct: 1059 GLLPSAYWIGQAVVDIPLFFIILI------LMLGSLLAFHYGL-----YFYTVKFLAVVF 1107
Query: 95 CAIGIVPSSVVLT-----SFQVMSRVFLIWAVTHSVKEVQS-EDSVLLFVIAWTITEIIR 148
C IG VPS ++ T +F+ + W+ +SV + + + F + +TI I+
Sbjct: 1108 CLIGYVPSVILFTYIASFTFKKILNTKEFWSFIYSVAALACIAITEITFFMGYTIATILH 1167
Query: 149 YSF 151
Y+F
Sbjct: 1168 YAF 1170
>gi|27262626 ATP-binding cassette, sub-family A , member 5 [Homo
sapiens]
Length = 1642
Score = 35.8 bits (81), Expect = 0.037
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 35 GPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILH 94
G L +AY + VV + +I + L GS + +Y + +F T L ++
Sbjct: 1059 GLLPSAYWIGQAVVDIPLFFIILI------LMLGSLLAFHYGL-----YFYTVKFLAVVF 1107
Query: 95 CAIGIVPSSVVLT-----SFQVMSRVFLIWAVTHSVKEVQS-EDSVLLFVIAWTITEIIR 148
C IG VPS ++ T +F+ + W+ +SV + + + F + +TI I+
Sbjct: 1108 CLIGYVPSVILFTYIASFTFKKILNTKEFWSFIYSVAALACIAITEITFFMGYTIATILH 1167
Query: 149 YSF 151
Y+F
Sbjct: 1168 YAF 1170
>gi|223671856 coiled-coil domain containing 85C [Homo sapiens]
Length = 419
Score = 33.9 bits (76), Expect = 0.14
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGPLA 38
AA+AAT AA G GGGGG AG+ + ++ GPL+
Sbjct: 156 AALAATGAASGGGGGGGGAGSRSSIDSQASLS-GPLS 191
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 33.9 bits (76), Expect = 0.14
Identities = 19/49 (38%), Positives = 22/49 (44%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGPLATAYLVIYNVVMT 50
A AATA AK G GG GAG G G A +IY++ T
Sbjct: 278 APSAATAGAKARGARGGAGGAGGGLGAAAAAGEFAFAYLAWLIYSIAFT 326
>gi|51948366 ribonucleoprotein, PTB-binding 2 [Homo sapiens]
Length = 678
Score = 33.1 bits (74), Expect = 0.24
Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 8 AAAKGNGGGGGRAGAGDASGTRKKKGPGP 36
AAA G+GGG G AG G A+G GPGP
Sbjct: 2 AAAAGDGGGEGGAGLGSAAGL----GPGP 26
Score = 29.3 bits (64), Expect = 3.5
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 1 MAAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGPLATAY 41
MAA A +G G G AG G G R G GP A A+
Sbjct: 1 MAAAAGDGGGEGGAGLGSAAGLGPGPGLR---GQGPSAEAH 38
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 32.7 bits (73), Expect = 0.31
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 1 MAAVAATAAAK----GNGGGGGRAGAGDASGTRKKKGPGP 36
+AA AA AAAK G GG GG AG+ A GT+ + P
Sbjct: 209 VAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNP 248
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 32.7 bits (73), Expect = 0.31
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
AA AAT + G GGGGG +G G S G G
Sbjct: 64 AAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGG 97
Score = 31.6 bits (70), Expect = 0.70
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
AA A + G GGGGG G G +SG G G
Sbjct: 65 AAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGG 98
Score = 30.8 bits (68), Expect = 1.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
+A AA A GGGGG G+G G+ G G
Sbjct: 62 SAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGG 95
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 32.7 bits (73), Expect = 0.31
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
AA AAT + G GGGGG +G G S G G
Sbjct: 64 AAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGG 97
Score = 31.6 bits (70), Expect = 0.70
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
AA A + G GGGGG G G +SG G G
Sbjct: 65 AAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGG 98
Score = 30.8 bits (68), Expect = 1.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
+A AA A GGGGG G+G G+ G G
Sbjct: 62 SAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGG 95
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 32.7 bits (73), Expect = 0.31
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
AA AAT + G GGGGG +G G S G G
Sbjct: 64 AAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGG 97
Score = 31.6 bits (70), Expect = 0.70
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
AA A + G GGGGG G G +SG G G
Sbjct: 65 AAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGG 98
Score = 30.8 bits (68), Expect = 1.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
+A AA A GGGGG G+G G+ G G
Sbjct: 62 SAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGG 95
>gi|4506783 Sin3A-associated protein, 30kDa [Homo sapiens]
Length = 220
Score = 32.3 bits (72), Expect = 0.41
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 1 MAAVAATAAAKGNGGGGGR------AGAGDASGTRKKKGPGP 36
+ A AA AA+ GNG G G AGA A+G GPGP
Sbjct: 22 VVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAGPGP 63
>gi|39995084 integrator complex subunit 3 [Homo sapiens]
Length = 1042
Score = 32.0 bits (71), Expect = 0.53
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 3 AVAATAAAKGNGGGGGRAGAGDASGTR 29
A AA AA+ GGGGG AGAG G R
Sbjct: 9 AAAAAAASGAAGGGGGGAGAGAPGGGR 35
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 32.0 bits (71), Expect = 0.53
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 2 AAVAATAAAKGNGGGGG----RAGAGDASGTRKKKG 33
AA AA AAA G GGGGG AG G S R++ G
Sbjct: 283 AAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 32.0 bits (71), Expect = 0.53
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 2 AAVAATAAAKGNGGGGG----RAGAGDASGTRKKKG 33
AA AA AAA G GGGGG AG G S R++ G
Sbjct: 283 AAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 32.0 bits (71), Expect = 0.53
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 2 AAVAATAAAKGNGGGGG----RAGAGDASGTRKKKG 33
AA AA AAA G GGGGG AG G S R++ G
Sbjct: 283 AAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGG 318
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 31.6 bits (70), Expect = 0.70
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASG 27
AA AA AAA G+ GGGG G G G
Sbjct: 400 AAAAAAAAALGSRGGGGGGGGGGGGG 425
Score = 31.2 bits (69), Expect = 0.91
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASG 27
AA AA ++G GGGGG G G G
Sbjct: 403 AAAAAALGSRGGGGGGGGGGGGGGGG 428
Score = 30.8 bits (68), Expect = 1.2
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
AA AA AA GGGGG G G G G G
Sbjct: 401 AAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGG 434
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 31.2 bits (69), Expect = 0.91
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGPLATAYLV 43
A + ++ G+GGGGG G G G+ G G A Y++
Sbjct: 374 AGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVI 415
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 31.2 bits (69), Expect = 0.91
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
AA AA +A GGG G GAG SG G G
Sbjct: 465 AAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGG 498
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPG 35
AA A +A +G G G G AG G G+ G G
Sbjct: 467 AAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGG 500
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 30.8 bits (68), Expect = 1.2
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 5 AATAAAKGNGGGGGRAGAGDASGTRKK-KGPG 35
A AAA+G GGGGG G G R + GPG
Sbjct: 72 AEPAAARGGGGGGGGGGGGRGPQARARGGGPG 103
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 30.8 bits (68), Expect = 1.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 12 GNGGGGGRAGAGDASGTRKKKGPG 35
G GGGGGR G G SG + +G G
Sbjct: 52 GGGGGGGRGGGGFHSGGNRGRGRG 75
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 30.8 bits (68), Expect = 1.2
Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 5 AATAAAKGNGGGGGRAGAGDASGTRKKKGPGPLATAYLVI--YNVVMTAGWLVIAVGLVR 62
A +A G GGGG G G A GP P + +L+ Y + M LV+ L
Sbjct: 4 AGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQALAP 63
Query: 63 AYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIG-IVPSSVVLTS 108
A L G PL F G L +G VPS V LT+
Sbjct: 64 APLPAG------LPPLAPLASF-AGRLTNTFCAGLGQAVPSMVALTT 103
>gi|25777645 small conductance calcium-activated potassium channel
protein 2 isoform a [Homo sapiens]
Length = 579
Score = 30.8 bits (68), Expect = 1.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 12 GNGGGGGRAGAGDASGTRKKK 32
G GGGGG +G G +SGT+ K
Sbjct: 91 GGGGGGGGSGHGSSSGTKSSK 111
>gi|209870086 F-box protein 28 isoform b [Homo sapiens]
Length = 179
Score = 30.4 bits (67), Expect = 1.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 1 MAAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGP 36
MAA A A+ GGG G G+ ASG+ +++ P P
Sbjct: 1 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPP 36
>gi|7662158 F-box protein 28 isoform a [Homo sapiens]
Length = 368
Score = 30.4 bits (67), Expect = 1.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 1 MAAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGP 36
MAA A A+ GGG G G+ ASG+ +++ P P
Sbjct: 1 MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPP 36
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 30.4 bits (67), Expect = 1.6
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 3 AVAATAAAKGNGGGGGRAGAGDASGTRK 30
A AA A A G GGGGG G G A K
Sbjct: 93 APAAGAGAGGGGGGGGAGGGGSAGSGAK 120
Score = 30.4 bits (67), Expect = 1.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 6 ATAAAKGNGGGGGRAGAGDASGTRKK 31
A A G GGGGG AG G ++G+ K
Sbjct: 95 AAGAGAGGGGGGGGAGGGGSAGSGAK 120
>gi|4503559 epithelial membrane protein 1 [Homo sapiens]
Length = 157
Score = 30.4 bits (67), Expect = 1.6
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 44 IYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSS 103
I NV + + + +VGL + SL Y+ E LK Q +L I+ C I ++
Sbjct: 24 IANVWLVSNTVDASVGLWKNCTNISCSDSLSYASEDALKTVQAFMILSIIFCVIALLVFV 83
Query: 104 VVLTSFQVMSRVFLIWAVT 122
L + + +R FL A T
Sbjct: 84 FQLFTMEKGNRFFLSGATT 102
>gi|122937440 multiple EGF-like-domains 9 [Homo sapiens]
Length = 639
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 2 AAVAATAAAKGNGGGGGRAGAGDASGTRKKKG----PGPLATA 40
AAVA+ A+A GGGG AG DAS +G P P ATA
Sbjct: 22 AAVASAASAGNVTGGGGAAGQVDASPGPGLRGEPSHPFPRATA 64
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.140 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,251,660
Number of Sequences: 37866
Number of extensions: 394595
Number of successful extensions: 5339
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4617
Number of HSP's gapped (non-prelim): 559
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.