Guide to the Human Genome
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Name: PTPLA Sequence: fasta or formatted (288aa) NCBI GI: 82659105
Description:

protein tyrosine phosphatase-like, member A

Referenced in:

Fatty Acid Synthesis
Muscle
Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         26           4
 C cysteine            0.7          2           1
 D aspartate           2.8          8           2
 E glutamate           4.9         14           2
 F phenylalanine       5.9         17           2
 G glycine             6.9         20           2
 H histidine           2.4          7           1
 I isoleucine          6.9         20           2
 K lysine              3.8         11           2
 L leucine            10.8         31           2
 M methionine          3.1          9           1
 N asparagine          1.7          5           1
 P proline             4.9         14           2
 Q glutamine           2.1          6           1
 R arginine            5.6         16           3
 S serine              6.6         19           2
 T threonine           7.3         21           1
 V valine              7.3         21           2
 W tryptophan          2.1          6           1
 Y tyrosine            5.2         15           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase-like, member A 
PTPLB                 0.541   protein tyrosine phosphatase-like (proline instead o...
PTPLAD1               0.135   protein tyrosine phosphatase-like A domain containi...
PTPLAD2               0.105   protein tyrosine phosphatase-like A domain containi...
ABCA5                 0.018   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.018   ATP-binding cassette, sub-family A , member 5 
LOC100293057          0.013   PREDICTED: hypothetical protein 
LOC100290511          0.013   PREDICTED: hypothetical protein XP_002347534 
LOC100287150          0.013   PREDICTED: hypothetical protein XP_002342203 
MKRN1                 0.011   makorin ring finger protein 1 isoform 2 
MKRN1                 0.011   makorin ring finger protein 1 isoform 1 
TCOF1                 0.011   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.011   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.011   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.011   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.011   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.011   Treacher Collins-Franceschetti syndrome 1 isoform c ...
GATA2                 0.009   GATA binding protein 2 isoform 1 
GATA2                 0.009   GATA binding protein 2 isoform 1 
GATA2                 0.009   GATA binding protein 2 isoform 2 
DNMT3A                0.009   DNA cytosine methyltransferase 3 alpha isoform a [Ho...
DNMT3A                0.009   DNA cytosine methyltransferase 3 alpha isoform a [Ho...
DNMT3A                0.009   DNA cytosine methyltransferase 3 alpha isoform b [Ho...
LOC100293384          0.009   PREDICTED: hypothetical protein 
LOC100289983          0.009   PREDICTED: hypothetical protein XP_002347407 
LOC100288706          0.009   PREDICTED: hypothetical protein XP_002343233 
FAM63B                0.009   hypothetical protein LOC54629 isoform a 
FAM63B                0.009   hypothetical protein LOC54629 isoform b 
TNS1                  0.009   tensin 
MLLT6                 0.009   myeloid/lymphoid or mixed-lineage leukemia (trithora...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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