Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: INTS3 Sequence: fasta or formatted (1042aa) NCBI GI: 39995084
Description:

integrator complex subunit 3

Referenced in:

Polyadenylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         72           7
 C cysteine            2.6         27           1
 D aspartate           5.7         59           2
 E glutamate           8.2         85           3
 F phenylalanine       3.6         37           2
 G glycine             4.1         43           6
 H histidine           2.7         28           2
 I isoleucine          4.9         51           2
 K lysine              5.9         61           2
 L leucine            13.5        141           3
 M methionine          3.3         34           2
 N asparagine          3.2         33           2
 P proline             4.5         47           2
 Q glutamine           5.4         56           2
 R arginine            5.2         54           2
 S serine              8.2         85           4
 T threonine           4.2         44           2
 V valine              5.0         52           2
 W tryptophan          1.1         11           1
 Y tyrosine            2.1         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrator complex subunit 3 
EVX2                  0.008   even-skipped homeobox 2 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.007   PREDICTED: hypothetical protein LOC80164 
POU4F1                0.007   POU domain, class 4, transcription factor 1 
ABCA12                0.007   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA12                0.007   ATP-binding cassette, sub-family A, member 12 isofor...
LRCH2                 0.007   leucine-rich repeats and calponin homology (CH) dom...
MAF                   0.007   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.007   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
FZD8                  0.007   frizzled 8 
HECA                  0.006   headcase 
TRIO                  0.006   triple functional domain (PTPRF interacting) 
PRDM13                0.006   PR domain containing 13 
MCC                   0.006   mutated in colorectal cancers isoform 1 
POU4F2                0.006   Brn3b POU domain transcription factor 
YEATS2                0.006   YEATS domain containing 2 
POU3F3                0.006   POU class 3 homeobox 3 
ARID1B                0.006   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.006   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.006   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
CT47B1                0.006   cancer/testis antigen family 147, member B1 
WIPF1                 0.006   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.006   WAS/WASL interacting protein family, member 1 
SYCE1                 0.006   synaptonemal complex central element protein 1 isof...
CCDC110               0.006   coiled-coil domain containing 110 isoform b 
CCDC110               0.006   coiled-coil domain containing 110 isoform a 
CAPNS1                0.006   calpain, small subunit 1 
CAPNS1                0.006   calpain, small subunit 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press