Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EMP1 Sequence: fasta or formatted (157aa) NCBI GI: 4503559
Description:

epithelial membrane protein 1

Referenced in:

Oligodendrocytes and Myelin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         10           1
 C cysteine            4.5          7           1
 D aspartate           2.5          4           1
 E glutamate           1.3          2           1
 F phenylalanine       7.6         12           2
 G glycine             5.7          9           1
 H histidine           2.5          4           2
 I isoleucine          9.6         15           2
 K lysine              3.2          5           2
 L leucine            12.7         20           2
 M methionine          2.5          4           1
 N asparagine          3.8          6           1
 P proline             0.0          0           0
 Q glutamine           1.9          3           1
 R arginine            1.9          3           1
 S serine              8.9         14           1
 T threonine           6.4         10           2
 V valine             11.5         18           2
 W tryptophan          2.5          4           1
 Y tyrosine            4.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   epithelial membrane protein 1 
PMP22                 0.347   peripheral myelin protein 22 
PMP22                 0.347   peripheral myelin protein 22 
PMP22                 0.347   peripheral myelin protein 22 
EMP2                  0.327   epithelial membrane protein 2 
EMP3                  0.235   epithelial membrane protein 3 
LOC391359             0.150   PREDICTED: similar to hCG1784039 
LIM2                  0.105   lens intrinsic membrane protein 2, 19kDa isoform 2 ...
CLDN18                0.082   claudin 18 isoform 2 
CLDN18                0.075   claudin 18 isoform 1 
LIM2                  0.065   lens intrinsic membrane protein 2, 19kDa isoform 1 [...
CLDND2                0.061   claudin domain containing 2 
LOC391359             0.051   PREDICTED: similar to hCG1784039 
LOC391359             0.051   PREDICTED: hypothetical protein LOC391359 
CLDN10                0.037   claudin 10 isoform b 
TMEM202               0.037   transmembrane protein 202 
ATP2B4                0.034   plasma membrane calcium ATPase 4 isoform 4a 
ATP2B4                0.034   plasma membrane calcium ATPase 4 isoform 4b 
CACNG8                0.034   voltage-dependent calcium channel gamma-8 subunit [H...
CLDN19                0.027   claudin 19 isoform a 
CLDN23                0.027   claudin 23 
CLDN11                0.027   claudin 11 
CLDN19                0.027   claudin 19 isoform b 
CACNG2                0.027   voltage-dependent calcium channel gamma-2 subunit [Ho...
CACNG3                0.027   voltage-dependent calcium channel gamma-3 subunit [Ho...
CLDN6                 0.024   claudin 6 
CLDN10                0.024   claudin 10 isoform a 
CLDN10                0.024   claudin 10 isoform a_i1 
TMEM114               0.020   PREDICTED: transmembrane protein 114 
TMEM114               0.020   PREDICTED: transmembrane protein 114, partial [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press