Guide to the Human Genome
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Name: PTPLAD1 Sequence: fasta or formatted (362aa) NCBI GI: 117168248
Description:

protein tyrosine phosphatase-like A domain containing 1

Referenced in:

Fatty Acid Synthesis
Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         15           2
 C cysteine            1.1          4           1
 D aspartate           3.0         11           1
 E glutamate           6.9         25           3
 F phenylalanine       8.0         29           2
 G glycine             3.9         14           1
 H histidine           2.2          8           1
 I isoleucine          6.6         24           2
 K lysine              5.8         21           4
 L leucine            12.2         44           2
 M methionine          3.0         11           2
 N asparagine          3.9         14           1
 P proline             3.9         14           1
 Q glutamine           4.7         17           1
 R arginine            6.1         22           4
 S serine              4.4         16           1
 T threonine           5.2         19           2
 V valine              7.5         27           2
 W tryptophan          2.5          9           2
 Y tyrosine            5.0         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase-like A domain containi... 
LOC100291405          0.476   PREDICTED: hypothetical protein XP_002347581 
PTPLAD2               0.238   protein tyrosine phosphatase-like A domain containi...
PTPLB                 0.120   protein tyrosine phosphatase-like (proline instead o...
PTPLA                 0.105   protein tyrosine phosphatase-like, member A 
AARSD1                0.032   alanyl-tRNA synthetase domain containing 1 isoform ...
AARSD1                0.025   alanyl-tRNA synthetase domain containing 1 isoform ...
AARSD1                0.025   alanyl-tRNA synthetase domain containing 1 isoform 2...
PTGES3                0.020   prostaglandin-E synthase 3 
PDE4DIP               0.014   phosphodiesterase 4D interacting protein isoform 1 ...
NOC2L                 0.011   nucleolar complex associated 2 homolog 
CCDC62                0.010   coiled-coil domain containing 62 isoform b 
CCDC62                0.010   coiled-coil domain containing 62 isoform a 
MAP3K7                0.008   mitogen-activated protein kinase kinase kinase 7 iso...
MAP3K7                0.008   mitogen-activated protein kinase kinase kinase 7 iso...
MAP3K7                0.008   mitogen-activated protein kinase kinase kinase 7 iso...
MAP3K7                0.008   mitogen-activated protein kinase kinase kinase 7 isof...
AARSD1                0.008   alanyl-tRNA synthetase domain containing 1 isoform ...
MFSD1                 0.008   major facilitator superfamily domain containing 1 [H...
TRPC5                 0.007   transient receptor potential cation channel, subfamil...
PIGU                  0.006   phosphatidylinositol glycan anchor biosynthesis, cla...
PC                    0.006   pyruvate carboxylase precursor 
PC                    0.006   pyruvate carboxylase precursor 
PC                    0.006   pyruvate carboxylase precursor 
CTTNBP2               0.006   cortactin binding protein 2 
SRD5A2L2              0.006   steroid 5 alpha-reductase 2-like 2 
CCDC18                0.006   sarcoma antigen NY-SAR-41 
CLPTM1L               0.004   CLPTM1-like 
KIAA0564              0.004   hypothetical protein LOC23078 isoform a 
CCDC150               0.004   coiled-coil domain containing 150 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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