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Search of human proteins with 33359682
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33359682 ephrin A1 isoform a precursor [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33359682 ephrin A1 isoform a precursor [Homo sapiens] 436 e-123
gi|33359680 ephrin A1 isoform b precursor [Homo sapiens] 378 e-105
gi|4503487 ephrin-A5 [Homo sapiens] 151 3e-37
gi|4826708 ephrin A3 [Homo sapiens] 147 5e-36
gi|27894381 ephrin-A2 precursor [Homo sapiens] 138 4e-33
gi|4885197 ephrin A4 isoform a [Homo sapiens] 129 2e-30
gi|100913200 ephrin A4 isoform c [Homo sapiens] 127 5e-30
gi|33359686 ephrin A4 isoform b [Homo sapiens] 125 3e-29
gi|4758248 ephrin-B1 precursor [Homo sapiens] 70 1e-12
gi|4758250 ephrin B2 [Homo sapiens] 66 2e-11
gi|4503489 ephrin-B3 precursor [Homo sapiens] 63 2e-10
gi|150456444 hypothetical protein LOC57578 [Homo sapiens] 30 1.4
gi|209977084 REST corepressor 3 isoform c [Homo sapiens] 29 3.2
gi|209977082 REST corepressor 3 isoform b [Homo sapiens] 29 3.2
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 29 3.2
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 29 3.2
gi|27734799 REST corepressor 2 [Homo sapiens] 29 3.2
gi|130977756 transmembrane anterior posterior transformation 1 [... 28 4.2
gi|22748979 transmembrane protein 199 [Homo sapiens] 28 4.2
gi|46487911 zinc finger protein 406 isoform ZFAT-1 [Homo sapiens] 28 5.5
gi|71480169 zinc finger protein 406 isoform TR-ZFAT [Homo sapiens] 28 5.5
gi|93277096 limbin [Homo sapiens] 28 5.5
gi|5729972 phosphodiesterase 10A isoform 2 [Homo sapiens] 27 9.3
gi|194595488 phosphodiesterase 10A isoform 1 [Homo sapiens] 27 9.3
gi|41281571 synovial sarcoma, X breakpoint 2 interacting protein... 27 9.3
gi|4826702 desmocollin 1 isoform Dsc1b preproprotein [Homo sapiens] 27 9.3
gi|13435361 desmocollin 1 isoform Dsc1a preproprotein [Homo sapi... 27 9.3
>gi|33359682 ephrin A1 isoform a precursor [Homo sapiens]
Length = 205
Score = 436 bits (1121), Expect = e-123
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA 60
MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
Sbjct: 1 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA 60
Query: 61 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF 120
DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
Sbjct: 61 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF 120
Query: 121 KEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKRLAADDPEVRVLHSIG 180
KEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKRLAADDPEVRVLHSIG
Sbjct: 121 KEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKRLAADDPEVRVLHSIG 180
Query: 181 HSAAPRLFPLAWTVLLLPLLLLQTP 205
HSAAPRLFPLAWTVLLLPLLLLQTP
Sbjct: 181 HSAAPRLFPLAWTVLLLPLLLLQTP 205
>gi|33359680 ephrin A1 isoform b precursor [Homo sapiens]
Length = 183
Score = 378 bits (971), Expect = e-105
Identities = 183/205 (89%), Positives = 183/205 (89%), Gaps = 22/205 (10%)
Query: 1 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA 60
MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
Sbjct: 1 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA 60
Query: 61 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF 120
DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
Sbjct: 61 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF 120
Query: 121 KEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKRLAADDPEVRVLHSIG 180
KEGHSYYYIS HSPQAHDNPQEKRLAADDPEVRVLHSIG
Sbjct: 121 KEGHSYYYIS----------------------HSPQAHDNPQEKRLAADDPEVRVLHSIG 158
Query: 181 HSAAPRLFPLAWTVLLLPLLLLQTP 205
HSAAPRLFPLAWTVLLLPLLLLQTP
Sbjct: 159 HSAAPRLFPLAWTVLLLPLLLLQTP 183
>gi|4503487 ephrin-A5 [Homo sapiens]
Length = 228
Score = 151 bits (382), Expect = 3e-37
Identities = 73/135 (54%), Positives = 93/135 (68%), Gaps = 2/135 (1%)
Query: 14 SLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVE 73
S A ADR+ V+WNSSNP+F+ DY I V +NDY+D+ CPHYED SV + E+Y+LY+V
Sbjct: 25 SKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDVFCPHYED-SVPEDKTERYVLYMVN 83
Query: 74 HEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPI 133
+ Y C SK RW+CNRP + +GP K SEKFQ FTPF+LG EF+ G Y+YIS I
Sbjct: 84 FDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAI 143
Query: 134 HQHEDR-CLRLKVTV 147
+ R CL+LKV V
Sbjct: 144 PDNGRRSCLKLKVFV 158
>gi|4826708 ephrin A3 [Homo sapiens]
Length = 238
Score = 147 bits (372), Expect = 5e-36
Identities = 73/148 (49%), Positives = 88/148 (59%), Gaps = 8/148 (5%)
Query: 7 PLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA--- 63
PLL A +RH V+WNSSN R E YT+ V +NDY+DI CPHY V A
Sbjct: 19 PLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPG 78
Query: 64 ----MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKE 119
EQY+LY+V Y+ C S+ RW+CNRP A H P K SEKFQR++ F+LG E
Sbjct: 79 PGGGAEQYVLYMVSRNGYRTCNA-SQGFKRWECNRPHAPHSPIKFSEKFQRYSAFSLGYE 137
Query: 120 FKEGHSYYYISKPIHQHEDRCLRLKVTV 147
F GH YYYIS P H +CLR+KV V
Sbjct: 138 FHAGHEYYYISTPTHNLHWKCLRMKVFV 165
>gi|27894381 ephrin-A2 precursor [Homo sapiens]
Length = 213
Score = 138 bits (347), Expect = 4e-33
Identities = 80/191 (41%), Positives = 100/191 (52%), Gaps = 22/191 (11%)
Query: 16 AAADRHTVFWNSSNPKFR------NEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYIL 69
A +DR+ V+WN SNP+F YT+ V +NDY+DI CPHY ME Y+L
Sbjct: 32 ANSDRYAVYWNRSNPRFHAGAGDDGGGYTVEVSINDYLDIYCPHYGAPLPPAERMEHYVL 91
Query: 70 YLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYI 129
Y+V E + C + + RW+CNRP+A GP K SEKFQ FTPF+LG EF+ GH YYYI
Sbjct: 92 YMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYI 151
Query: 130 SKPIHQHEDR-CLRLKVTVSGKITHSPQAHDNPQEKRLAADDPEVRVLHSIGHSAAPRLF 188
S DR CLRLKV V E A +P +S RLF
Sbjct: 152 SATPPNAVDRPCLRLKVYVR-----------PTNETLYEAPEPIFTSNNSCSSPGGCRLF 200
Query: 189 ----PLAWTVL 195
P+ WT+L
Sbjct: 201 LSTIPVLWTLL 211
>gi|4885197 ephrin A4 isoform a [Homo sapiens]
Length = 201
Score = 129 bits (323), Expect = 2e-30
Identities = 68/156 (43%), Positives = 91/156 (58%), Gaps = 5/156 (3%)
Query: 4 LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63
LWA LG ++ RH V+WNSSNP+ D + + LNDY+DI+CPHYE +
Sbjct: 11 LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
Query: 64 MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
E + LY+V+ Y+ CQ + + RW C+ P G + SEK QRFTPF+LG EF
Sbjct: 71 -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
Query: 123 GHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAH 158
G +YYYIS P + +CLRL+V+V K S AH
Sbjct: 127 GETYYYISVPTPESSGQCLRLQVSVCCKERKSESAH 162
>gi|100913200 ephrin A4 isoform c [Homo sapiens]
Length = 193
Score = 127 bits (320), Expect = 5e-30
Identities = 67/163 (41%), Positives = 93/163 (57%), Gaps = 5/163 (3%)
Query: 4 LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63
LWA LG ++ RH V+WNSSNP+ D + + LNDY+DI+CPHYE +
Sbjct: 11 LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
Query: 64 MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
E + LY+V+ Y+ CQ + + RW C+ P G + SEK QRFTPF+LG EF
Sbjct: 71 -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
Query: 123 GHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKR 165
G +YYYIS P + +CLRL+V+V K + P P+ +
Sbjct: 127 GETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEPESSQ 169
>gi|33359686 ephrin A4 isoform b [Homo sapiens]
Length = 207
Score = 125 bits (313), Expect = 3e-29
Identities = 65/148 (43%), Positives = 88/148 (59%), Gaps = 5/148 (3%)
Query: 4 LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63
LWA LG ++ RH V+WNSSNP+ D + + LNDY+DI+CPHYE +
Sbjct: 11 LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
Query: 64 MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
E + LY+V+ Y+ CQ + + RW C+ P G + SEK QRFTPF+LG EF
Sbjct: 71 -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
Query: 123 GHSYYYISKPIHQHEDRCLRLKVTVSGK 150
G +YYYIS P + +CLRL+V+V K
Sbjct: 127 GETYYYISVPTPESSGQCLRLQVSVCCK 154
>gi|4758248 ephrin-B1 precursor [Homo sapiens]
Length = 346
Score = 70.1 bits (170), Expect = 1e-12
Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 2 EFLWAPLLGLCCSLA---AADRHTVFWNSSNPKFRN-EDYTIHVQLNDYVDIICPHYEDH 57
++L A ++ C LA A + V W+S NPKF + + I+ ++ D +DIICP E
Sbjct: 11 KWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAE-- 68
Query: 58 SVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLG 117
A E Y LYLV E+ C V CNRP + + + KFQ F+P +G
Sbjct: 69 --AGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEI---RFTIKFQEFSPNYMG 123
Query: 118 KEFKEGHSYYYIS 130
EFK+ H YY S
Sbjct: 124 LEFKKHHDYYITS 136
>gi|4758250 ephrin B2 [Homo sapiens]
Length = 333
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 2 EFLWAPLLGLCCSLAAAD--RHTVFWNSSNPKFR-NEDYTIHVQLNDYVDIICPHYEDHS 58
++ W L+ LC + + ++WNSSN KF + ++ Q+ D +DIICP + +
Sbjct: 10 KYCWGVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKT 69
Query: 59 VADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 118
V E Y +Y+V+ ++ C + ++ C +P K + KFQ F+P G
Sbjct: 70 VGQ--YEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDI---KFTIKFQEFSPNLWGL 124
Query: 119 EFKEGHSYYYIS 130
EF++ YY IS
Sbjct: 125 EFQKNKDYYIIS 136
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 63.2 bits (152), Expect = 2e-10
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 8 LLGLCCSLAAADRHTVFWNSSNPKFRNED-YTIHVQLNDYVDIICPHYED---HSVADAA 63
LLG+ ++ V+WNS+N +F+ E Y ++ Q+ D +D++CP HS +
Sbjct: 18 LLGVLGLVSGLSLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPN-- 75
Query: 64 MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEG 123
E Y LYLV + + C+ + C+RP + + KFQ ++P G EF+
Sbjct: 76 YEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDL---RFTIKFQEYSPNLWGHEFRSH 132
Query: 124 HSYYYIS 130
H YY I+
Sbjct: 133 HDYYIIA 139
>gi|150456444 hypothetical protein LOC57578 [Homo sapiens]
Length = 2458
Score = 30.0 bits (66), Expect = 1.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 23 VFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYIL 69
+FW N F ++D+ + + + V +IC + HSV + +Y L
Sbjct: 866 IFWTIINGNFNSKDWKMRFEAVEKVAVICRFLDIHSVTKNHLLKYSL 912
>gi|209977084 REST corepressor 3 isoform c [Homo sapiens]
Length = 449
Score = 28.9 bits (63), Expect = 3.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 57 HSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPF 114
HS+ DA +++YI E Y + Q+ + W KH EK FTPF
Sbjct: 94 HSIPDAKLDEYIAIAKEKHGYNV--EQALGMLFWH------KHNIEKSLADLPNFTPF 143
>gi|209977082 REST corepressor 3 isoform b [Homo sapiens]
Length = 436
Score = 28.9 bits (63), Expect = 3.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 57 HSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPF 114
HS+ DA +++YI E Y + Q+ + W KH EK FTPF
Sbjct: 94 HSIPDARLDEYIAIAKEKHGYNV--EQALGMLFWH------KHNIEKSLADLPNFTPF 143
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 28.9 bits (63), Expect = 3.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 57 HSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPF 114
HS+ DA +++YI E Y + Q+ + W KH EK FTPF
Sbjct: 94 HSIPDAKLDEYIAIAKEKHGYNV--EQALGMLFWH------KHNIEKSLADLPNFTPF 143
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 28.9 bits (63), Expect = 3.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 57 HSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPF 114
HS+ DA +++YI E Y + Q+ + W KH EK FTPF
Sbjct: 36 HSIPDAKLDEYIAIAKEKHGYNV--EQALGMLFWH------KHNIEKSLADLPNFTPF 85
>gi|27734799 REST corepressor 2 [Homo sapiens]
Length = 523
Score = 28.9 bits (63), Expect = 3.2
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 56 DHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPF 114
+H V+DA +++YI E Y + Q+ + W KH EK FTPF
Sbjct: 81 NHCVSDAKLDKYIAMAKEKHGYNI--EQALGMLLWH------KHDVEKSLADLANFTPF 131
>gi|130977756 transmembrane anterior posterior transformation 1
[Homo sapiens]
Length = 567
Score = 28.5 bits (62), Expect = 4.2
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 80 CQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDR 139
CQ + ++ + + P A P K S K Q + G +E S +PIHQ E+
Sbjct: 455 CQYVKEAKMEEKLSNPPATCTPGKPSSKSQNKCKPSQGLSTEENLSASITKQPIHQKENI 514
Query: 140 CLRLKVTVSGKITHSPQAHDNPQEKRLAADDPEVR 174
L + S + +P EK + D+ E++
Sbjct: 515 IPLLVTSNSDQFLTTPDG----DEKDITQDNSELK 545
>gi|22748979 transmembrane protein 199 [Homo sapiens]
Length = 208
Score = 28.5 bits (62), Expect = 4.2
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 95 PSAKHGPEKLSEKFQRFTPFTLGKEFKEGHS--------YYYISKPIHQH---EDRCLRL 143
P + PE+L K + LGK+ K G S + + + +HQH D L L
Sbjct: 17 PGGELEPERLPRKLRAELEAALGKKHKGGDSSSGPQRLVSFRLIRDLHQHLRERDSKLYL 76
Query: 144 KVTVSGKITHSPQAHDNPQEKRLAADDPEVRV 175
+ G + P+ P+ L A ++++
Sbjct: 77 HELLEGSEIYLPEVVKPPRNPELVARLEKIKI 108
>gi|46487911 zinc finger protein 406 isoform ZFAT-1 [Homo sapiens]
Length = 1243
Score = 28.1 bits (61), Expect = 5.5
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 63 AMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
+++ ++ + Y+ Q ++ N KH EK + + FT + +
Sbjct: 285 SLQAHLRIHTNEKPYKCPQCSYASAIKANLNVHLRKHTGEKFACDYCSFTCLS------K 338
Query: 123 GHSYYYIS---KPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKRL 166
GH +I K I QH C + V I H AHD PQ+K++
Sbjct: 339 GHLKVHIERVHKKIKQHCRFCKKKYSDVKNLIKHIRDAHD-PQDKKV 384
>gi|71480169 zinc finger protein 406 isoform TR-ZFAT [Homo sapiens]
Length = 846
Score = 28.1 bits (61), Expect = 5.5
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 63 AMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
+++ ++ + Y+ Q ++ N KH EK + + FT + +
Sbjct: 273 SLQAHLRIHTNEKPYKCPQCSYASAIKANLNVHLRKHTGEKFACDYCSFTCLS------K 326
Query: 123 GHSYYYIS---KPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKRL 166
GH +I K I QH C + V I H AHD PQ+K++
Sbjct: 327 GHLKVHIERVHKKIKQHCRFCKKKYSDVKNLIKHIRDAHD-PQDKKV 372
>gi|93277096 limbin [Homo sapiens]
Length = 1308
Score = 28.1 bits (61), Expect = 5.5
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 93 NRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSGKIT 152
N + E+L + FQ + L K F GH Y + + E R L T + ++T
Sbjct: 565 NYSKIQENVEELMDFFQASKRYHLSKRF--GHREYLVQN-LQSSETRVQGLLSTAAAQLT 621
Query: 153 HSPQAHD 159
H Q H+
Sbjct: 622 HLIQKHE 628
>gi|5729972 phosphodiesterase 10A isoform 2 [Homo sapiens]
Length = 779
Score = 27.3 bits (59), Expect = 9.3
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 42 QLNDYVDIICPHYEDHSVA-DAAMEQYILY---LVEHEEYQLCQPQSKDQVRWQCNRPSA 97
+LND++ + Y D+ VA D+ +E ++Y LV + L Q K++
Sbjct: 248 ELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNK---------- 297
Query: 98 KHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQA 157
E S+ F +G+E KEG + +K I ++ + +V +G++ + P A
Sbjct: 298 ----ELYSDLFD------IGEE-KEGKPVFKKTKEIRFSIEKGIAGQVARTGEVLNIPDA 346
Query: 158 HDNPQEKR 165
+ +P+ R
Sbjct: 347 YADPRFNR 354
>gi|194595488 phosphodiesterase 10A isoform 1 [Homo sapiens]
Length = 789
Score = 27.3 bits (59), Expect = 9.3
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 25/128 (19%)
Query: 42 QLNDYVDIICPHYEDHSVA-DAAMEQYILY---LVEHEEYQLCQPQSKDQVRWQCNRPSA 97
+LND++ + Y D+ VA D+ +E ++Y LV + L Q K++
Sbjct: 258 ELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNK---------- 307
Query: 98 KHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQA 157
E S+ F +G+E KEG + +K I ++ + +V +G++ + P A
Sbjct: 308 ----ELYSDLFD------IGEE-KEGKPVFKKTKEIRFSIEKGIAGQVARTGEVLNIPDA 356
Query: 158 HDNPQEKR 165
+ +P+ R
Sbjct: 357 YADPRFNR 364
>gi|41281571 synovial sarcoma, X breakpoint 2 interacting protein
[Homo sapiens]
Length = 614
Score = 27.3 bits (59), Expect = 9.3
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 18 ADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEY 77
AD W + + RNED + LNDY + + + + A + +L ++ E
Sbjct: 235 ADGKRGSWRTGKTEARNEDEMYKILLNDY-----EYRQKQILMENAELKKVLQQMKKEMI 289
Query: 78 QLCQPQSK 85
L PQ K
Sbjct: 290 SLLSPQKK 297
>gi|4826702 desmocollin 1 isoform Dsc1b preproprotein [Homo sapiens]
Length = 840
Score = 27.3 bits (59), Expect = 9.3
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 17 AADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILY 70
AA +T+F++ S P E + + D DI C S+ EQ+ LY
Sbjct: 162 AAQNYTIFYSISGPGVDKEPFNLFYIEKDTGDIFC----TRSIDREKYEQFALY 211
>gi|13435361 desmocollin 1 isoform Dsc1a preproprotein [Homo
sapiens]
Length = 894
Score = 27.3 bits (59), Expect = 9.3
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 17 AADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILY 70
AA +T+F++ S P E + + D DI C S+ EQ+ LY
Sbjct: 162 AAQNYTIFYSISGPGVDKEPFNLFYIEKDTGDIFC----TRSIDREKYEQFALY 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,762,175
Number of Sequences: 37866
Number of extensions: 384415
Number of successful extensions: 917
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 28
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.