Guide to the Human Genome
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Name: EVC2 Sequence: fasta or formatted (1308aa) NCBI GI: 93277096
Description:

limbin

Referenced in:

Bone and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9        116           3
 C cysteine            1.3         17           2
 D aspartate           4.0         52           2
 E glutamate           9.8        128           3
 F phenylalanine       3.3         43           2
 G glycine             5.1         67           2
 H histidine           2.4         32           2
 I isoleucine          3.2         42           2
 K lysine              6.1         80           3
 L leucine            14.1        184           4
 M methionine          2.5         33           2
 N asparagine          2.3         30           2
 P proline             3.4         45           2
 Q glutamine           7.6         99           4
 R arginine            7.0         92           3
 S serine              7.7        101           3
 T threonine           4.2         55           2
 V valine              4.7         61           2
 W tryptophan          1.4         18           2
 Y tyrosine            1.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   limbin 
MYH9                  0.022   myosin, heavy polypeptide 9, non-muscle 
TCHH                  0.020   trichohyalin 
CEP110                0.020   centrosomal protein 110kDa 
PLEC1                 0.019   plectin 1 isoform 11 
PLEC1                 0.019   plectin 1 isoform 10 
PLEC1                 0.019   plectin 1 isoform 8 
PLEC1                 0.019   plectin 1 isoform 7 
PLEC1                 0.019   plectin 1 isoform 6 
PLEC1                 0.019   plectin 1 isoform 3 
PLEC1                 0.019   plectin 1 isoform 2 
PLEC1                 0.019   plectin 1 isoform 1 
CEP250                0.019   centrosomal protein 2 
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
GOLGA3                0.019   Golgi autoantigen, golgin subfamily a, 3 
MYH10                 0.019   myosin, heavy polypeptide 10, non-muscle 
LOC283767             0.019   golgi autoantigen, golgin subfamily a-like 
MYH7B                 0.018   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
LOC727832             0.018   golgi autoantigen, golgin subfamily a-like 
GOLGA4                0.018   golgi autoantigen, golgin subfamily a, 4 
MYH2                  0.018   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.018   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH6                  0.017   myosin heavy chain 6 
FAM184A               0.017   hypothetical protein LOC79632 isoform 1 
NUMA1                 0.017   nuclear mitotic apparatus protein 1 
MYH7                  0.017   myosin, heavy chain 7, cardiac muscle, beta 
CEP164                0.017   centrosomal protein 164kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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