Guide to the Human Genome
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Name: TMEM199 Sequence: fasta or formatted (208aa) NCBI GI: 22748979
Description:

transmembrane protein 199

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         17           2
 C cysteine            1.0          2           1
 D aspartate           2.4          5           1
 E glutamate           9.6         20           2
 F phenylalanine       2.4          5           1
 G glycine             7.7         16           2
 H histidine           2.4          5           1
 I isoleucine          4.8         10           1
 K lysine              5.3         11           2
 L leucine            15.4         32           2
 M methionine          1.9          4           1
 N asparagine          1.9          4           1
 P proline             3.8          8           2
 Q glutamine           2.9          6           1
 R arginine            8.7         18           1
 S serine              6.2         13           3
 T threonine           3.8          8           1
 V valine              8.7         18           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 199 
RUNDC1                0.011   RUN domain containing 1 
ZCCHC11               0.011   zinc finger, CCHC domain containing 11 isoform a [Ho...
ZCCHC11               0.011   zinc finger, CCHC domain containing 11 isoform b [Ho...
ZCCHC11               0.011   zinc finger, CCHC domain containing 11 isoform c [Ho...
LOC100292659          0.008   PREDICTED: hypothetical protein 
LOC100290202          0.008   PREDICTED: hypothetical protein XP_002346777 
LOC100289405          0.008   PREDICTED: hypothetical protein XP_002342625 
KIAA1543              0.008   NEZHA isoform 2 
KIAA1543              0.008   NEZHA isoform 1 
EVPL                  0.008   envoplakin 
EFNA1                 0.008   ephrin A1 isoform a precursor 
MYH14                 0.008   myosin, heavy chain 14 isoform 1 
MYH14                 0.008   myosin, heavy chain 14 isoform 2 
MYH14                 0.008   myosin, heavy chain 14 isoform 3 
SNPH                  0.008   syntaphilin 
KIF5A                 0.008   kinesin family member 5A 
RAPGEFL1              0.008   Rap guanine nucleotide exchange factor (GEF)-like 1 [...
GTF2I                 0.005   general transcription factor II, i isoform 3 
GTF2I                 0.005   general transcription factor II, i isoform 2 
GTF2I                 0.005   general transcription factor II, i isoform 1 
GTF2I                 0.005   general transcription factor II, i isoform 4 
CYP26B1               0.005   cytochrome P450, family 26, subfamily b, polypeptide ...
C11orf87              0.005   hypothetical protein LOC399947 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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