Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PDE10A Sequence: fasta or formatted (779aa) NCBI GI: 5729972
Description:

phosphodiesterase 10A isoform 2

Referenced in:

Cyclic Nucleotides

Other entries for this name:
alt prot [789aa] phosphodiesterase 10A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         51           3
 C cysteine            2.8         22           1
 D aspartate           4.7         37           1
 E glutamate           7.4         58           2
 F phenylalanine       4.1         32           1
 G glycine             5.4         42           2
 H histidine           3.1         24           2
 I isoleucine          6.7         52           2
 K lysine              6.2         48           2
 L leucine            10.1         79           3
 M methionine          2.6         20           2
 N asparagine          4.4         34           2
 P proline             3.5         27           2
 Q glutamine           4.1         32           1
 R arginine            4.6         36           2
 S serine              6.7         52           3
 T threonine           5.9         46           2
 V valine              6.2         48           2
 W tryptophan          1.3         10           1
 Y tyrosine            3.7         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 10A isoform 2 
PDE10A                0.983   phosphodiesterase 10A isoform 1 
PDE11A                0.221   phosphodiesterase 11A isoform 4 
PDE11A                0.215   phosphodiesterase 11A isoform 3 
PDE5A                 0.204   phosphodiesterase 5A isoform 1 
PDE5A                 0.204   phosphodiesterase 5A isoform 3 
PDE5A                 0.204   phosphodiesterase 5A isoform 2 
PDE11A                0.203   phosphodiesterase 11A isoform 2 
PDE2A                 0.195   phosphodiesterase 2A isoform 3 
PDE2A                 0.195   phosphodiesterase 2A isoform 2 
PDE2A                 0.195   phosphodiesterase 2A isoform 1 
PDE11A                0.189   phosphodiesterase 11A isoform 1 
PDE6A                 0.137   phosphodiesterase 6A 
PDE6C                 0.137   phosphodiesterase 6C 
PDE6B                 0.132   phosphodiesterase 6B isoform 2 
PDE6B                 0.132   phosphodiesterase 6B isoform 1 
PDE6B                 0.127   phosphodiesterase 6B isoform 3 
PDE4C                 0.061   phosphodiesterase 4C isoform PDE4C-2 
PDE4C                 0.061   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.061   phosphodiesterase 4C isoform PDE4C-1 
PDE9A                 0.060   phosphodiesterase 9A isoform g 
PDE9A                 0.060   phosphodiesterase 9A isoform g 
PDE9A                 0.060   phosphodiesterase 9A isoform o 
PDE9A                 0.060   phosphodiesterase 9A isoform n 
PDE9A                 0.060   phosphodiesterase 9A isoform m 
PDE9A                 0.060   phosphodiesterase 9A isoform j 
PDE9A                 0.060   phosphodiesterase 9A isoform g 
PDE9A                 0.060   phosphodiesterase 9A isoform l 
PDE9A                 0.060   phosphodiesterase 9A isoform k 
PDE9A                 0.060   phosphodiesterase 9A isoform j 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press