Guide to the Human Genome
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Name: RAVER1 Sequence: fasta or formatted (756aa) NCBI GI: 123173757
Description:

RAVER1

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         66           2
 C cysteine            1.2          9           1
 D aspartate           3.2         24           1
 E glutamate           5.3         40           3
 F phenylalanine       2.8         21           1
 G glycine            12.3         93           3
 H histidine           2.6         20           1
 I isoleucine          1.3         10           1
 K lysine              4.0         30           2
 L leucine            14.9        113           3
 M methionine          1.1          8           1
 N asparagine          2.4         18           2
 P proline            12.2         92           3
 Q glutamine           4.6         35           3
 R arginine            6.0         45           2
 S serine              9.1         69           4
 T threonine           2.9         22           1
 V valine              2.9         22           1
 W tryptophan          0.3          2           1
 Y tyrosine            2.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAVER1 
RAVER2                0.263   ribonucleoprotein, PTB-binding 2 
SFPQ                  0.030   splicing factor proline/glutamine rich (polypyrimidin...
PSPC1                 0.029   paraspeckle protein 1 
NONO                  0.029   non-POU domain containing, octamer-binding isoform ...
NONO                  0.029   non-POU domain containing, octamer-binding isoform ...
NONO                  0.029   non-POU domain containing, octamer-binding isoform 1...
CSTF2T                0.028   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
PUF60                 0.026   poly-U binding splicing factor 60KDa isoform b [Homo...
MBD6                  0.024   methyl-CpG binding domain protein 6 
ELAVL4                0.024   ELAV-like 4 isoform 1 
ELAVL4                0.024   ELAV-like 4 isoform 5 
ELAVL4                0.024   ELAV-like 4 isoform 4 
ELAVL4                0.024   ELAV-like 4 isoform 3 
ELAVL4                0.024   ELAV-like 4 isoform 2 
ELAVL2                0.023   ELAV (embryonic lethal, abnormal vision, Drosophila...
CSTF2                 0.022   cleavage stimulation factor subunit 2 
COL8A2                0.022   collagen, type VIII, alpha 2 
PUF60                 0.022   poly-U binding splicing factor 60KDa isoform c [Hom...
PUF60                 0.022   poly-U binding splicing factor 60KDa isoform a [Homo...
WDR33                 0.022   WD repeat domain 33 isoform 1 
ELAVL1                0.022   ELAV-like 1 
COL17A1               0.021   alpha 1 type XVII collagen 
PRB2                  0.021   proline-rich protein BstNI subfamily 2 
COL4A5                0.021   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.021   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.021   type IV collagen alpha 5 isoform 3 precursor 
GLTSCR1               0.021   glioma tumor suppressor candidate region gene 1 [Ho...
PRB1                  0.021   proline-rich protein BstNI subfamily 1 isoform 1 pre...
EIF3G                 0.020   eukaryotic translation initiation factor 3, subunit ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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