Search of human proteins with 31982904

Search of human proteins with 31982904

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31982904 nucleoporin 35kDa [Homo sapiens]
         (326 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31982904 nucleoporin 35kDa [Homo sapiens]                          657   0.0  
gi|47132519 Ras association and pleckstrin homology domains 1 is...    44   3e-04
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    42   0.001
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         42   0.001
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    41   0.002
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    41   0.002
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    41   0.002
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    41   0.002
gi|169205253 PREDICTED: hypothetical protein [Homo sapiens]            39   0.005
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]       39   0.005
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         39   0.005
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    39   0.008
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    39   0.008
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    39   0.008
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [...    39   0.008
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    39   0.008
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]             39   0.008
gi|83367077 mucin 16 [Homo sapiens]                                    38   0.011
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]                38   0.011
gi|239743293 PREDICTED: mucin 12 [Homo sapiens]                        38   0.014
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ...    38   0.014
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ...    38   0.014
gi|116174780 SEC24 related gene family, member A [Homo sapiens]        37   0.018
gi|16933565 protocadherin 21 precursor [Homo sapiens]                  37   0.018
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]               37   0.018
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...    37   0.024
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...    37   0.024
gi|163965366 nascent polypeptide-associated complex alpha subuni...    37   0.024
gi|150170729 microtubule associated serine/threonine kinase 3 [H...    37   0.031
gi|11386183 WAS protein family, member 2 [Homo sapiens]                36   0.053

>gi|31982904 nucleoporin 35kDa [Homo sapiens]
          Length = 326

 Score =  657 bits (1696), Expect = 0.0
 Identities = 326/326 (100%), Positives = 326/326 (100%)

Query: 1   MAAFAVEPQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60
           MAAFAVEPQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG
Sbjct: 1   MAAFAVEPQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVG 60

Query: 61  VMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQ 120
           VMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQ
Sbjct: 61  VMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQ 120

Query: 121 SPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDSWVTVFG 180
           SPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDSWVTVFG
Sbjct: 121 SPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDSWVTVFG 180

Query: 181 FPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 240
           FPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV
Sbjct: 181 FPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 240

Query: 241 KPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTMRPLATAYKASTSDY 300
           KPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTMRPLATAYKASTSDY
Sbjct: 241 KPCIDKSVMESSDRCALSSPSLAFTPPIKTLGTPTQPGSTPRISTMRPLATAYKASTSDY 300

Query: 301 QVISDRQTPKKDESLVSKAMEYMFGW 326
           QVISDRQTPKKDESLVSKAMEYMFGW
Sbjct: 301 QVISDRQTPKKDESLVSKAMEYMFGW 326


>gi|47132519 Ras association and pleckstrin homology domains 1 isoform
            1 [Homo sapiens]
          Length = 1250

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 49/162 (30%), Positives = 63/162 (38%), Gaps = 13/162 (8%)

Query: 4    FAVEPQGPALGSEPMMLG----SPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPS- 58
            F   P  PA+ S+P+       +P SP P V A+  P +    +P P    P      S 
Sbjct: 869  FPPPPTPPAMESQPLKPVPANVAPQSP-PAVKAK--PKWQPSSIPVPSPDFPPPPPESSL 925

Query: 59   VGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNI-- 116
            V      SP+ A   PP P      DKSG+P  ++     SSPG    P T +R  +I  
Sbjct: 926  VFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKT--SKTSSPGGKKPPPTPQRNSSIKS 983

Query: 117  -SVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDP 157
             S  + P     S          PA  G P K TL P    P
Sbjct: 984  SSGAEHPEPKRPSVDSLVSKFTPPAESGSPSKETLPPPAAPP 1025


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
            sapiens]
          Length = 5537

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 47/163 (28%), Positives = 65/163 (39%), Gaps = 34/163 (20%)

Query: 6    VEPQGPALGSEP------MMLGSPTSPKPGVNAQFLPGFLM---GDLPAPVTPQPRSISG 56
            + PQ  ALGS P      + +GSPT+P  G++     GFL    G +P P +P    +  
Sbjct: 2106 IPPQPGALGSPPPAAAPTIFIGSPTTPA-GLSTS-ADGFLKPPAGSVPGPDSPGELFLKL 2163

Query: 57   PSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNI 116
            P     ++ S    G +P  P+ P       APP    Y                  P  
Sbjct: 2164 PPQVPAQVPSQDPFGLAPAYPLEPRFPT---APPTYPPYPS----------------PTG 2204

Query: 117  SVMQSPLVGVTSTPGTGQ-SMFSPASIGQPRKTTLSPAQLDPF 158
            +  Q P++G +S PG GQ   F     G PR     P+  DPF
Sbjct: 2205 APAQPPMLGASSRPGAGQPGEFHTTPPGTPRH---QPSTPDPF 2244


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 47/179 (26%), Positives = 67/179 (37%), Gaps = 51/179 (28%)

Query: 7   EPQGPALGSEPMM-------LGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPS- 58
           EP+GP+L    ++       L  P++P   + A FLP   +G              GPS 
Sbjct: 591 EPEGPSLLVASLLPPPPSDLLPPPSAPPSNLLASFLPLLALGPTAGDGEGSAEGAGGPSG 650

Query: 59  --------------------VGVMEMRSPLLA------GGSPPQPVVPAHKDKSGAPPVR 92
                                 ++ + S LLA       G+PPQP V +       PP  
Sbjct: 651 EPFSGLGDLSPLLFPPLSAPPTLIALNSALLAATLDPPSGTPPQPCVLSAPQP--GPPTS 708

Query: 93  SIYDDISSPG---LGSTPLTSRRQPNISVMQSPLVG---------VTSTPGTGQSMFSP 139
           S+    + PG   LG  P  S R P    + SPL+G         +TS+PG   S+  P
Sbjct: 709 SVTTATTDPGASSLGKAPSNSGRPPQ---LLSPLLGASLLGDLSSLTSSPGALPSLLQP 764



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 45/168 (26%), Positives = 63/168 (37%), Gaps = 19/168 (11%)

Query: 10  GPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSIS--GPSVGV-MEMRS 66
           GP  G  P  L  P       + +FLP    G+ P+P  P P +IS   PS      +RS
Sbjct: 180 GPG-GLFPPRLADPVPSGGSSSPRFLP---RGNAPSPAPPPPPAISLNAPSYNWGAALRS 235

Query: 67  PLLAG--GSPPQPVVPAH----------KDKSGAPPVRSIYDDISSPGLGSTPLTSRRQP 114
            L+    GSPP P   +            D    PP+    +  + PG  S P  S    
Sbjct: 236 SLVPSDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHPGPASQPPVSSATM 295

Query: 115 NISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQG 162
           ++ ++  PL G  +  G G   F  +S+         P    P   QG
Sbjct: 296 HLPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPSTLQG 343



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 48/177 (27%), Positives = 63/177 (35%), Gaps = 44/177 (24%)

Query: 8   PQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRS- 66
           P+ PA   +P  L  P+ P        LP  L   L    TP P    G S  ++   + 
Sbjct: 389 PRAPAPVPQPFSLPEPSQP-------ILPSVL--SLLGLPTPGPSHSDG-SFNLLGSDAH 438

Query: 67  ----PLLAGGSPPQPVVPAHKDKSG-------------APPVRSIYDDISSP-------G 102
               P L+ GSPPQP  P      G             APP  S    + SP       G
Sbjct: 439 LPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASKAPVVPSPVLQSPSEG 498

Query: 103 LG-----STPLTSRRQPNISVMQSPLVGVTST----PGTGQSMFSPASIGQPRKTTL 150
           LG     + PL            SP  G+  +    PG   ++  P S+GQP  + L
Sbjct: 499 LGMGAGPACPLPPLAGGEAFPFPSPEQGLALSGAGFPGMLGALPLPLSLGQPPPSPL 555


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 21  GSPTSP-------KPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLLAGGS 73
           GSP SP        PG   Q  PG L G    P  P P   +GP  G + + +P+   G 
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPG-LQGTQGVPGAPGPPGEAGPR-GELSVSTPV--PGP 657

Query: 74  PPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSP-LVGVTSTPGT 132
           P  P  P H    G P +         PGL   P      P I     P   G    PGT
Sbjct: 658 PGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPG-PDGEPGIPGIGFPGPPGPKGDQGFPGT 716

Query: 133 GQSMFSPASIGQP 145
             S+  P  +G+P
Sbjct: 717 KGSLGCPGKMGEP 729


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 21  GSPTSP-------KPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLLAGGS 73
           GSP SP        PG   Q  PG L G    P  P P   +GP  G + + +P+   G 
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPG-LQGTQGVPGAPGPPGEAGPR-GELSVSTPV--PGP 657

Query: 74  PPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSP-LVGVTSTPGT 132
           P  P  P H    G P +         PGL   P      P I     P   G    PGT
Sbjct: 658 PGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPG-PDGEPGIPGIGFPGPPGPKGDQGFPGT 716

Query: 133 GQSMFSPASIGQP 145
             S+  P  +G+P
Sbjct: 717 KGSLGCPGKMGEP 729


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1637

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 21  GSPTSP-------KPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLLAGGS 73
           GSP SP        PG   Q  PG L G    P  P P   +GP  G + + +P+   G 
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPG-LQGTQGVPGAPGPPGEAGPR-GELSVSTPV--PGP 657

Query: 74  PPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSP-LVGVTSTPGT 132
           P  P  P H    G P +         PGL   P      P I     P   G    PGT
Sbjct: 658 PGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPG-PDGEPGIPGIGFPGPPGPKGDQGFPGT 716

Query: 133 GQSMFSPASIGQP 145
             S+  P  +G+P
Sbjct: 717 KGSLGCPGKMGEP 729


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1670

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 41/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 21  GSPTSP-------KPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLLAGGS 73
           GSP SP        PG   Q  PG L G    P  P P   +GP  G + + +P+   G 
Sbjct: 602 GSPGSPGPAGPAGPPGYGPQGEPG-LQGTQGVPGAPGPPGEAGPR-GELSVSTPV--PGP 657

Query: 74  PPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSP-LVGVTSTPGT 132
           P  P  P H    G P +         PGL   P      P I     P   G    PGT
Sbjct: 658 PGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPG-PDGEPGIPGIGFPGPPGPKGDQGFPGT 716

Query: 133 GQSMFSPASIGQP 145
             S+  P  +G+P
Sbjct: 717 KGSLGCPGKMGEP 729


>gi|169205253 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 3859

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 35/107 (32%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 22   SPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLLAGGSPPQPVVPA 81
            SP SP    +   +P      LP PVTP      GP V V     P+    S   PVVP 
Sbjct: 1725 SPGSPVTSADGPVVPVTSADSLPVPVTP----ADGPVVPVTSADGPVAPVSSADGPVVPV 1780

Query: 82   HKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSPLVGVTS 128
                S   PV +  D    P +  TP  S   P +     P+V VTS
Sbjct: 1781 TPADSPVVPVTTADD----PTVPVTPADSPVVP-VPPANGPIVPVTS 1822



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 39/139 (28%), Positives = 50/139 (35%), Gaps = 19/139 (13%)

Query: 23   PTSPKPGVNAQFLPGFLMGDLPAPVTPQPR------SISGPSVGVMEMRSPLLAGGSPPQ 76
            P SP    + + +P    GD   PVTP         S  GP V V    SP +    P  
Sbjct: 1027 PVSPVTTADGRIVPVTAAGDPIVPVTPADTPGSPVTSADGPVVPVTSADSPFVPVTPPDG 1086

Query: 77   PVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQP--NISVMQSPLVGVTSTPGTGQ 134
            PVVP         PV S    +        P+TS   P   +S    P+V VT       
Sbjct: 1087 PVVPVTSADGPVAPVSSADGPV-------VPVTSADGPVAPVSSADGPVVPVT----PAD 1135

Query: 135  SMFSPASIGQPRKTTLSPA 153
            S F P +        ++PA
Sbjct: 1136 SPFIPVTTADDPIVPVTPA 1154



 Score = 37.0 bits (84), Expect = 0.024
 Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 43   LPAPVTPQPRSISGPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPG 102
            L  PVTP       P V V    SP++   S   PV+P     S   PV S   D  SPG
Sbjct: 1674 LVVPVTPA----DSPIVPVTPADSPVVLVTSADSPVIPVTPADSPVVPVTSA--DTDSPG 1727

Query: 103  LGSTPLTSRRQPNISVMQSPLVGVTSTPGTG 133
               +P+TS   P + V  +  + V  TP  G
Sbjct: 1728 ---SPVTSADGPVVPVTSADSLPVPVTPADG 1755



 Score = 36.6 bits (83), Expect = 0.031
 Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 22   SPTSPKPGVNAQFLPGFLMGDLPAPVTPQPR------SISGPSVGVMEMRSPLLAGGSPP 75
            +P SP    +   +P    GD   PVTP         S  GP V V     PL+    P 
Sbjct: 1414 TPGSPVTSADGPVVPVTPAGDPIVPVTPADTPGSPVTSADGPVVPVTTPDGPLVPVSPPD 1473

Query: 76   QPVVPAHKDKSGAPPVR---SIYDDISSPGLGSTPLTSRRQPNISVMQSPLVGVTSTPGT 132
             PVVP         PV    S +  +++      P+T    P + V  + +  V  TP  
Sbjct: 1474 GPVVPVTSADGPVVPVTPADSPFIPVTTADDPIVPVTPADSPVVPVTPADIPVVPVTPAN 1533

Query: 133  G 133
            G
Sbjct: 1534 G 1534



 Score = 35.8 bits (81), Expect = 0.053
 Identities = 34/122 (27%), Positives = 44/122 (36%), Gaps = 15/122 (12%)

Query: 23  PTSPKPGVNAQFLPGFLMGDLPAPVTPQPR------SISGPSVGVMEMRSPLLAGGSPPQ 76
           P  P    + + +P    GD   PVTP         S  GP V V    SP +    P  
Sbjct: 686 PVIPVTTADGRIVPVTAAGDPIVPVTPADTPGSPVTSADGPVVPVTSADSPFVPVTPPDG 745

Query: 77  PVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQP--NISVMQSPLVGVTSTPGTGQ 134
           PVVP         PV S    +        P+TS   P   +S    P+V VT     G 
Sbjct: 746 PVVPVTSADGPVAPVSSADGPV-------VPVTSADGPVAPVSSADGPVVPVTPADTNGP 798

Query: 135 SM 136
           ++
Sbjct: 799 AV 800



 Score = 34.3 bits (77), Expect = 0.15
 Identities = 49/177 (27%), Positives = 69/177 (38%), Gaps = 25/177 (14%)

Query: 18   MMLGSPTS--PKPGVNAQFLPGFLMGDLPA-PVTPQPRSI------SGPSVGVMEMRSPL 68
            ++L SPT   P P +    +      D P  PVTP    +       GP V V  + SP+
Sbjct: 2365 VVLVSPTDGIPVPDLADDPVVSVTTSDSPVIPVTPTDSPVVPVAPADGPVVPVTSVDSPV 2424

Query: 69   LAGGSPPQPVVPAHKDKSGAPPVRSIYDDISS--PGLGS-TPLTSRRQPNISV--MQSPL 123
            +       PV+P     S   P     D + S  P  G   P+T+   P ISV    SP+
Sbjct: 2425 VPVTPADSPVIPVTPADSLVVPATPADDPVVSVTPADGPVVPVTTADIPVISVTSADSPV 2484

Query: 124  VGVTSTPG------TGQSMFSPASIGQPRKTTLSPAQ-----LDPFYTQGDSLTSED 169
            V VT   G      +  S+  PA+        + PA        P+     S+TS+D
Sbjct: 2485 VPVTPADGLVVPVTSADSVVVPATPADCPLVPVDPADSPIVLFTPYDNPVVSVTSDD 2541



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 37/127 (29%), Positives = 47/127 (37%), Gaps = 21/127 (16%)

Query: 22  SPTSPKPGVNAQFLPGFLMGDLPAPVTPQPR------SISGPSVGVMEMRSPLLAGGSPP 75
           SP  P    + + +P    GD   PVTP         S  GP V V     PL+    P 
Sbjct: 425 SPLIPVTTADGRVVPVTAAGDPIVPVTPADTPGSPVTSADGPVVPVTSADIPLVPVTPPD 484

Query: 76  QPVVPAHKDKSGAPPVRSIYDDI------SSPGLGST-------PLTSRRQPNISV--MQ 120
            PVVP         PV S    +       SP +  T       P+T    P +SV   +
Sbjct: 485 GPVVPVTSADGPVAPVSSADGPVVPVTPADSPFIPVTTADDLIVPVTPADSPVLSVTPAE 544

Query: 121 SPLVGVT 127
           SP + VT
Sbjct: 545 SPAIPVT 551



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 37/128 (28%), Positives = 49/128 (38%), Gaps = 19/128 (14%)

Query: 6    VEPQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSI------SGPSV 59
            V+P  PA G        P  P    ++  +P     DL  PVTP    I        P V
Sbjct: 2085 VDPVTPADG--------PVVPVTPADSPVIPVTPADDLIVPVTPADSLIVSVTPADSPVV 2136

Query: 60   GVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVM 119
             V    SP+++  S   PVVP     +   PV         P +  TP  S   P ++  
Sbjct: 2137 PVTPADSPVISVASADSPVVPVTPADTVVVPV----TPADGPVIPVTPAESPAIP-VTPA 2191

Query: 120  QSPLVGVT 127
             SP+V VT
Sbjct: 2192 DSPVVPVT 2199



 Score = 32.0 bits (71), Expect = 0.77
 Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 18/141 (12%)

Query: 4   FAVEPQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPR------SISGP 57
           FA  P  P   ++ ++   P +P    ++  +P     D   P+TP         S +GP
Sbjct: 83  FADNPVVPVTPADDLVF--PVTP---ADSPVIPVTSADDPVVPITPADNPVVPVTSANGP 137

Query: 58  SVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDI------SSPGLGSTPLTSR 111
            + V    SP+    S   PVVP     S   PV      +       SP    TP  S 
Sbjct: 138 VIPVTPADSPVFPVASADGPVVPVTPADSPVFPVTPADSPLFPVTPADSPLFPVTPADSA 197

Query: 112 RQPNISVMQSPLVGVTSTPGT 132
             P ++    P+V VT   GT
Sbjct: 198 AIP-VTPADGPVVHVTPANGT 217



 Score = 32.0 bits (71), Expect = 0.77
 Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 46  PVTPQPRSISGPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGS 105
           PVTP     +GP V V    SP +       PVVP     S   PV      + S  L  
Sbjct: 559 PVTPA----NGPVVPVTSADSPFVPVIPADGPVVPVTPADSPVVPVTPADSPVLSVTLAD 614

Query: 106 TPLTSRRQPNISVMQSPLVGVTSTPG------TGQSMFSPASIGQPRKTTLSPAQLDPF- 158
           +P        ++   SP+V VT   G      +  S F P +       +++PA+     
Sbjct: 615 SPAVP-----VTPADSPVVPVTPADGPVVPVASADSPFVPVTPADDPIVSVTPAESPAIP 669

Query: 159 YTQGDS 164
            TQ DS
Sbjct: 670 VTQADS 675



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 35/122 (28%), Positives = 43/122 (35%), Gaps = 15/122 (12%)

Query: 14   GSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQP------RSISGPSVGVMEMRSP 67
            GS       P  P    ++ F+P         PVT          S  GP V V     P
Sbjct: 1058 GSPVTSADGPVVPVTSADSPFVPVTPPDGPVVPVTSADGPVAPVSSADGPVVPVTSADGP 1117

Query: 68   LLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISV--MQSPLVG 125
            +    S   PVVP     S   PV +  D I        P+T    P +SV    SP+V 
Sbjct: 1118 VAPVSSADGPVVPVTPADSPFIPVTTADDPI-------VPVTPADSPVLSVTLADSPVVP 1170

Query: 126  VT 127
            VT
Sbjct: 1171 VT 1172



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 39/141 (27%), Positives = 48/141 (34%), Gaps = 18/141 (12%)

Query: 23   PTSPKPGVNAQFLPGFLMGDLPAPVTPQPR------SISGPSVGVMEMRSPLLAGGSPPQ 76
            P  P    ++  +P     D   PVTP         S  GP V V    SPL+       
Sbjct: 2204 PVVPVTPADSPIVPVPPASDPVVPVTPADTPGSPVASADGPVVPVTSADSPLVPVTPGDS 2263

Query: 77   PVVPAHKDKSGAPPVRSIYDDISSPGLGST---PLTSRRQP--NISVMQSPLVGVT---- 127
            PVVP     S   PV S    +    L      P+T    P   +S   SP+V VT    
Sbjct: 2264 PVVPVTPADSPVFPVTSADGPVFPVTLADDPVFPVTPADDPIFPVSPADSPVVPVTPANI 2323

Query: 128  ---STPGTGQSMFSPASIGQP 145
                 P    S+    S G P
Sbjct: 2324 PVVPVPPANGSVVPVTSAGSP 2344



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 49/195 (25%), Positives = 66/195 (33%), Gaps = 37/195 (18%)

Query: 11   PALGSEPMM----LGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSI------------ 54
            P L  +P++      SP  P    ++  +P         PVTP    +            
Sbjct: 1230 PDLADDPVVSVTIADSPVIPVTPADSPVVPVTSADSPVVPVTPADSPVILVTPVGPVVSV 1289

Query: 55   ---SGPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSI---------YDD----- 97
                GP V V    SP++   S   PVVP         PV S           DD     
Sbjct: 1290 TTADGPVVLVSTADSPVIPVTSADSPVVPVTPADGPVVPVTSADSPFVPVTPADDPIVPV 1349

Query: 98   --ISSPGLGSTPLTSRRQPNISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSP-AQ 154
                SP +  TP  S   P ++   SP+V VTS       + +  S   P   T  P   
Sbjct: 1350 TPADSPIVSVTPAESPAIP-VTPADSPVVPVTSADSPLIPLTTAGSRVVPVTPTGDPIVP 1408

Query: 155  LDPFYTQGDSLTSED 169
            + P  T G  +TS D
Sbjct: 1409 VTPADTPGSPVTSAD 1423



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 21/129 (16%)

Query: 13   LGSEPMMLGSPTSPKPGVNAQFLP-----GFLMGDLPA-PVTPQPRSI------SGPSVG 60
            L S   +L  P SP  G+    L         + D P  PVTP    +       GP V 
Sbjct: 1839 LDSSTDVLVVPVSPTDGILVPDLADDPVVSVTIADSPVIPVTPADSPVVLVTPADGPVVP 1898

Query: 61   VMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISV-- 118
            V  + +P++       PV+P         PV    D I        P+TS   P +SV  
Sbjct: 1899 VTSVDNPVVPVTPADNPVIPVTPVDDPVVPVTPADDPI-------VPVTSADSPIVSVTP 1951

Query: 119  MQSPLVGVT 127
              SP+  VT
Sbjct: 1952 ADSPVFPVT 1960



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 37/140 (26%), Positives = 49/140 (35%), Gaps = 20/140 (14%)

Query: 46  PVTPQPRSI------SGPSVGVMEMRSPL---LAGGSPPQPVVPAHKDKSGAPPVRSIYD 96
           PVTP    +        P V V    SP    +    P  PV PA        P      
Sbjct: 329 PVTPADSPVLSVTLADSPVVPVTPADSPFVPAIPADGPVVPVTPADSPVVPVTPADGPVV 388

Query: 97  DISSPGLGSTPLTSRRQPNISV--MQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPA- 153
            ++S      P+T    P +SV    SP+V VTS      S   P +    R   ++ A 
Sbjct: 389 SVASADSPFVPVTPADDPIVSVTPADSPVVPVTS----ADSPLIPVTTADGRVVPVTAAG 444

Query: 154 ----QLDPFYTQGDSLTSED 169
                + P  T G  +TS D
Sbjct: 445 DPIVPVTPADTPGSPVTSAD 464



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 35/132 (26%), Positives = 46/132 (34%), Gaps = 21/132 (15%)

Query: 17   PMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTP------QPRSISGPSVGVMEMRSPL-- 68
            P+   SP  P    ++  +P     DL  PVTP          +  P V V    SP+  
Sbjct: 2028 PVTADSPFVPVTPADSPVIPVTPPDDLVVPVTPIDCPVVPVTLVDCPVVSVTPANSPVDP 2087

Query: 69   -----------LAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNIS 117
                           SP  PV PA        P  S+   ++       P+T    P IS
Sbjct: 2088 VTPADGPVVPVTPADSPVIPVTPADDLIVPVTPADSLIVSVTPADSPVVPVTPADSPVIS 2147

Query: 118  V--MQSPLVGVT 127
            V    SP+V VT
Sbjct: 2148 VASADSPVVPVT 2159



 Score = 29.3 bits (64), Expect = 5.0
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 10  GPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLL 69
           GP +   P     P  P    ++ F+P         PVTP    I  P         P++
Sbjct: 785 GPVVPVTPADTNGPAVPVTSADSPFVPVIPADSPVVPVTPADDPIV-PVTPADSSFVPVI 843

Query: 70  AGGSPPQPVVPA 81
           +  SP  PV+PA
Sbjct: 844 SADSPFVPVIPA 855



 Score = 28.5 bits (62), Expect = 8.5
 Identities = 37/147 (25%), Positives = 51/147 (34%), Gaps = 29/147 (19%)

Query: 6   VEPQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSI------SGPSV 59
           +   GP +   P    SP  P    ++  L   L      PVTP    +       GP V
Sbjct: 581 IPADGPVVPVTPA--DSPVVPVTPADSPVLSVTLADSPAVPVTPADSPVVPVTPADGPVV 638

Query: 60  GVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVM 119
                  P+ +  SP  PV PA        P  S    ++       P+TS  +P I V 
Sbjct: 639 -------PVASADSPFVPVTPADDPIVSVTPAESPAIPVTQADSPVVPVTSADRPVIPVT 691

Query: 120 QS------------PLVGVT--STPGT 132
            +            P+V VT   TPG+
Sbjct: 692 TADGRIVPVTAAGDPIVPVTPADTPGS 718



 Score = 28.5 bits (62), Expect = 8.5
 Identities = 32/128 (25%), Positives = 45/128 (35%), Gaps = 21/128 (16%)

Query: 22   SPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLL---AGGSPPQPV 78
            SP  P    +   +P     D   PVTP       P V V     P++   +  SP  PV
Sbjct: 936  SPADPVTAADGPVVPFTPADDPIVPVTPA----DSPVVSVTPADGPVVPVASADSPFVPV 991

Query: 79   VPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQP------------NISVMQSPLVGV 126
             PA        P  S    ++       P+TS  +P             ++    P+V V
Sbjct: 992  TPADDPIVSVTPAESPAIPVTQADSPVVPVTSADRPVSPVTTADGRIVPVTAAGDPIVPV 1051

Query: 127  T--STPGT 132
            T   TPG+
Sbjct: 1052 TPADTPGS 1059



 Score = 28.5 bits (62), Expect = 8.5
 Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 46   PVTPQPRSISGPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGS 105
            PVTP       P++ V    SP++       PVVP     S   PV       S P +  
Sbjct: 2177 PVTPA----ESPAIPVTPADSPVVPVTPADDPVVPVTPADSPIVPV----PPASDPVVPV 2228

Query: 106  TPLTSRRQPNISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPF 158
            TP  +   P ++    P+V VTS      S   P + G      ++PA    F
Sbjct: 2229 TPADTPGSP-VASADGPVVPVTS----ADSPLVPVTPGDSPVVPVTPADSPVF 2276



 Score = 28.5 bits (62), Expect = 8.5
 Identities = 40/153 (26%), Positives = 53/153 (34%), Gaps = 25/153 (16%)

Query: 23   PTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISG-PSVGVMEMRSPLLAGGSPPQPVVPA 81
            P +  P V      G ++   PA     P  ++  P V V    SP++   S   PVV  
Sbjct: 3169 PITDGPVVPDLTTDGLVVSVTPAGAPVVPVFLTDCPDVTVTPADSPVVPDPSSDGPVVAD 3228

Query: 82   HKDKSGAPPVRSIYDDI--SSPGLG---------------------STPLTSRRQPNISV 118
              D  G  PV    D +   SP  G                       P+T    P +SV
Sbjct: 3229 SLDDDGLVPVTPADDSVVPDSPANGLVVPDPTTDGPVAPDPSVDGPVVPVTPADAPTVSV 3288

Query: 119  MQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLS 151
              +    VT TP  G  + S +  G P  T LS
Sbjct: 3289 TLADCPDVTVTPPDG-LVVSDSKRGGPVVTGLS 3320


>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
          Length = 748

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 48/183 (26%), Positives = 68/183 (37%), Gaps = 50/183 (27%)

Query: 9   QGPALGSEPMMLGSPTSPKPGVN-AQFLPGFLMGDLPA-------------PVTPQPRS- 53
           Q P   ++P  L   +  +P V+ AQ LPG ++   P              PV PQ +  
Sbjct: 307 QPPVAQNQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQ 366

Query: 54  -----------ISGPSVGVMEMRSPLLAGGSP-----------------PQPVVPAHKD- 84
                      +  P V V +   P+L+  SP                 PQP  P+ +  
Sbjct: 367 QTAVQTAQAAQMVAPGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPN 426

Query: 85  ---KSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSPLVGVTSTPGTGQSMFSPAS 141
               SG  P  S +    SP    +P+T+R   N SV   P  G  +TP    S+ SPA 
Sbjct: 427 SNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSV---PSPGPLNTPVNPSSVMSPAG 483

Query: 142 IGQ 144
             Q
Sbjct: 484 SSQ 486


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 21/140 (15%)

Query: 17   PMMLGSPTSPKPGVNAQFLPGFLMGDLPA-------PVTPQPR----SISGPSVGVMEMR 65
            P++L   +S  PG+N+   P      +PA       P  P P     S+  P+    +  
Sbjct: 1524 PLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPFPSAPNPAPAQASLLAPASSASQAL 1583

Query: 66   SPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSPLVG 125
            +  LA  + PQ  + A    S APP+  +   + +P  G+ P+ +  Q  +     P++ 
Sbjct: 1584 ATPLAPMAAPQTAILA---PSPAPPLAPL--PVLAPSPGAAPVLASSQTPV-----PVMA 1633

Query: 126  VTSTPGTGQSMFSPASIGQP 145
             +STPGT  +  SP     P
Sbjct: 1634 PSSTPGTSLASASPVPAPTP 1653



 Score = 35.4 bits (80), Expect = 0.069
 Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 11/147 (7%)

Query: 12   ALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPV-TPQPRSISGPSVGVMEMRSPLLA 70
            A  S P    +  SP P       P      LPAPV +P P   S  ++ +    +P L 
Sbjct: 1633 APSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLALAPALAPTLG 1692

Query: 71   GGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSPLVGVTST- 129
            G SP Q +     +  G  P +++     +P     P  ++    +S+   P +G T T 
Sbjct: 1693 GSSPSQTLSLGTGNPQGPFPTQTL---SLTPASSLVPTPAQ---TLSLAPGPPLGPTQTL 1746

Query: 130  ---PGTGQSMFSPASIGQPRKTTLSPA 153
               P    +  SP         TL+PA
Sbjct: 1747 SLAPAPPLAPASPVGPAPAHTLTLAPA 1773



 Score = 34.3 bits (77), Expect = 0.15
 Identities = 42/162 (25%), Positives = 58/162 (35%), Gaps = 26/162 (16%)

Query: 10   GPALG---------SEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISG---P 57
            GP LG         + P+   SP  P P       P      L AP + Q  ++S    P
Sbjct: 1737 GPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAPVP 1796

Query: 58   SVGVMEMRSPLLAGGSPPQPVVPAHK---DKSGAPPVRSIYDDISSPGLGSTPLTSRRQP 114
            ++G    ++  LA  S   P   A       SGA P+           + S    S+ +P
Sbjct: 1797 TLGPAAAQTLALAPASTQSPASQASSLVVSASGAAPL--------PVTMVSRLPVSKDEP 1848

Query: 115  NISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLD 156
            +   ++S   G  S P T  S   P    QP     SP  LD
Sbjct: 1849 DTLTLRS---GPPSPPSTATSFGGPRPRRQPPPPPRSPFYLD 1887



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 25/177 (14%)

Query: 6    VEPQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPV--------------TPQP 51
            V P  PA       L +  +P+P +    LP   +G   AP+              +P P
Sbjct: 1324 VPPLAPAPRPPSSGLPAVLNPRPTLTPGRLPTPTLGTARAPMPTPTLVRPLLKLVHSPSP 1383

Query: 52   R-SISGPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPL-- 108
              S S P    + + SPL    S P P        + +P    +   +S P   S P+  
Sbjct: 1384 EVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSLPISV 1443

Query: 109  -TSRRQPNISVMQSPLVGVTSTPGTGQSM-------FSPASIGQPRKTTLSPAQLDP 157
             T+   P  + +  P+    +   +G ++        +P     P   +L+P+   P
Sbjct: 1444 PTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSGASP 1500



 Score = 28.5 bits (62), Expect = 8.5
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 44   PAPVTPQPRSISGPSVGVMEMRSPLLAGGSPPQPV--VPAHKDKSGAPPVRSIYDDISSP 101
            P+P+TP P  +  P+  V    + +    SPP+     P     S  P    + D  S+ 
Sbjct: 2972 PSPLTPLPPLLVCPTATVANTVTTVTISTSPPKRKRGRPPKNPPSPRPSQLPVLDRDSTS 3031

Query: 102  GLGSTPLTSRRQP 114
             L S  L  RRQP
Sbjct: 3032 VLESCGLGRRRQP 3044


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
            sapiens]
          Length = 1691

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 45/150 (30%), Positives = 54/150 (36%), Gaps = 25/150 (16%)

Query: 7    EPQGPALGSEPMMLGSPTSP-------KPGVNAQ-FLPGFLMGDLPAPVTPQPRSISGP- 57
            EP  P     P + GS   P        PG   Q  LPGF     P P  P P+ ISGP 
Sbjct: 1084 EPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGF--PGTPGP--PGPKGISGPP 1139

Query: 58   -SVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNI 116
             + G+     P+  GG P QP  P  K K G   +         PG          QP  
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPG----------QPGF 1189

Query: 117  SVMQSP-LVGVTSTPGTGQSMFSPASIGQP 145
                 P L G++   G G     P + G P
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLP 1219



 Score = 36.6 bits (83), Expect = 0.031
 Identities = 43/151 (28%), Positives = 52/151 (34%), Gaps = 24/151 (15%)

Query: 7    EPQGPALGSEPMMLGSPTSPK-----PGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGV 61
            +P  P L  +P + G P  PK     PG      P  L G +     P P+ + GP    
Sbjct: 989  DPGQPGLSGQPGLPGPP-GPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPP--- 1044

Query: 62   MEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSI-----YDDISSPGLGSTPLTSRRQPNI 116
                 P    G P  P +P  K   G P + SI           PGL   P      P I
Sbjct: 1045 ----GPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYP----GNPGI 1096

Query: 117  --SVMQSPLVGVTSTPGTGQSMFSPASIGQP 145
              SV    L G+  TPG       P   G P
Sbjct: 1097 KGSVGDPGLPGLPGTPGAKGQPGLPGFPGTP 1127


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
            sapiens]
          Length = 1685

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 45/150 (30%), Positives = 54/150 (36%), Gaps = 25/150 (16%)

Query: 7    EPQGPALGSEPMMLGSPTSP-------KPGVNAQ-FLPGFLMGDLPAPVTPQPRSISGP- 57
            EP  P     P + GS   P        PG   Q  LPGF     P P  P P+ ISGP 
Sbjct: 1084 EPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGF--PGTPGP--PGPKGISGPP 1139

Query: 58   -SVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNI 116
             + G+     P+  GG P QP  P  K K G   +         PG          QP  
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPG----------QPGF 1189

Query: 117  SVMQSP-LVGVTSTPGTGQSMFSPASIGQP 145
                 P L G++   G G     P + G P
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLP 1219



 Score = 36.6 bits (83), Expect = 0.031
 Identities = 43/151 (28%), Positives = 52/151 (34%), Gaps = 24/151 (15%)

Query: 7    EPQGPALGSEPMMLGSPTSPK-----PGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGV 61
            +P  P L  +P + G P  PK     PG      P  L G +     P P+ + GP    
Sbjct: 989  DPGQPGLSGQPGLPGPP-GPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPP--- 1044

Query: 62   MEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSI-----YDDISSPGLGSTPLTSRRQPNI 116
                 P    G P  P +P  K   G P + SI           PGL   P      P I
Sbjct: 1045 ----GPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYP----GNPGI 1096

Query: 117  --SVMQSPLVGVTSTPGTGQSMFSPASIGQP 145
              SV    L G+  TPG       P   G P
Sbjct: 1097 KGSVGDPGLPGLPGTPGAKGQPGLPGFPGTP 1127


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
            sapiens]
          Length = 1688

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 45/150 (30%), Positives = 54/150 (36%), Gaps = 25/150 (16%)

Query: 7    EPQGPALGSEPMMLGSPTSP-------KPGVNAQ-FLPGFLMGDLPAPVTPQPRSISGP- 57
            EP  P     P + GS   P        PG   Q  LPGF     P P  P P+ ISGP 
Sbjct: 1084 EPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGF--PGTPGP--PGPKGISGPP 1139

Query: 58   -SVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNI 116
             + G+     P+  GG P QP  P  K K G   +         PG          QP  
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPG----------QPGF 1189

Query: 117  SVMQSP-LVGVTSTPGTGQSMFSPASIGQP 145
                 P L G++   G G     P + G P
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLP 1219



 Score = 36.6 bits (83), Expect = 0.031
 Identities = 43/151 (28%), Positives = 52/151 (34%), Gaps = 24/151 (15%)

Query: 7    EPQGPALGSEPMMLGSPTSPK-----PGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGV 61
            +P  P L  +P + G P  PK     PG      P  L G +     P P+ + GP    
Sbjct: 989  DPGQPGLSGQPGLPGPP-GPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPP--- 1044

Query: 62   MEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSI-----YDDISSPGLGSTPLTSRRQPNI 116
                 P    G P  P +P  K   G P + SI           PGL   P      P I
Sbjct: 1045 ----GPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYP----GNPGI 1096

Query: 117  --SVMQSPLVGVTSTPGTGQSMFSPASIGQP 145
              SV    L G+  TPG       P   G P
Sbjct: 1097 KGSVGDPGLPGLPGTPGAKGQPGLPGFPGTP 1127


>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
            sapiens]
          Length = 1636

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 47/180 (26%), Positives = 62/180 (34%), Gaps = 37/180 (20%)

Query: 8    PQGP-ALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPA---------PVTPQP------ 51
            PQ P     +P +LG P  P   ++ Q  PG     LPA         P  PQP      
Sbjct: 994  PQSPYPYAPQPGVLGQPPPP---LHTQLYPGPAQDPLPAHSGALPFPSPGPPQPPHPPLA 1050

Query: 52   ------RSISGPSVGVMEMRSPLLAGGSPPQP-VVPAHKDKSGAPPVRSIYDDISSPGLG 104
                      GP    + +R P  AG S P P +VP+     G  PV         P   
Sbjct: 1051 YGPAPSTRPMGPQAAPLTIRGPSSAGQSTPSPHLVPSPAPSPGPGPVPP-----RPPAAE 1105

Query: 105  STPLTSRRQPNISVMQS---PLVGVTSTPGTGQSMFSPASIGQP---RKTTLSPAQLDPF 158
              P   R      ++ S      G T +PG GQ +  P  +      R   L   + DP+
Sbjct: 1106 PPPCLRRGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGRRPQALRLIERDPY 1165



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 37/138 (26%), Positives = 48/138 (34%), Gaps = 19/138 (13%)

Query: 10   GPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLL 69
            GP    +P+ L  P    P       PG L    P P  PQP  +  P   +     P  
Sbjct: 968  GPQPPQQPLPLQHPHLFPPQA-----PGLLPPQSPYPYAPQPGVLGQPPPPLHTQLYP-- 1020

Query: 70   AGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVM--QSPLVGVT 127
                P Q  +PAH   SGA P    +     P     PL     P+   M  Q+  + + 
Sbjct: 1021 ---GPAQDPLPAH---SGALP----FPSPGPPQPPHPPLAYGPAPSTRPMGPQAAPLTIR 1070

Query: 128  STPGTGQSMFSPASIGQP 145
                 GQS  SP  +  P
Sbjct: 1071 GPSSAGQSTPSPHLVPSP 1088



 Score = 29.3 bits (64), Expect = 5.0
 Identities = 33/130 (25%), Positives = 45/130 (34%), Gaps = 10/130 (7%)

Query: 2   AAFAVEPQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGP-SVG 60
           A  A +P        P M+  P  P   + +     F     P+   P P  +SGP   G
Sbjct: 735 AVEAGDPPEELRSLPPDMVAGPRLPDTFLGSATPLHFPPSPFPSSTGPGPHYLSGPLPPG 794

Query: 61  VMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQ 120
                + L+   +P    +P       AP          +P LG  P   R  P   V+ 
Sbjct: 795 TYSGPTQLIQPRAPGPHAMPV------APGPALYPAPAYTPELGLVP---RSSPQHGVVS 845

Query: 121 SPLVGVTSTP 130
           SP VGV   P
Sbjct: 846 SPYVGVGPAP 855


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 46/187 (24%), Positives = 66/187 (35%), Gaps = 31/187 (16%)

Query: 5   AVEPQGPALGSEPMML------GSPTSPK----PGVNAQFLPGFLMGDLPAPVTPQPRSI 54
           A  PQ P   S+PM +       S   P     PG N   LPG     LP  ++  P ++
Sbjct: 434 AAPPQPPGALSKPMSVHLLNQGSSIVIPAQHMLPGQNQFLLPGAPAVQLPQQLSALPANV 493

Query: 55  SG-------PSVGVMEMRSPLL-----AGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPG 102
            G       P  G   + +P+L     AG     PV+  H     A  + +    +  P 
Sbjct: 494 GGQILAAAAPHTGGQLIANPILTNQNLAGPLSLGPVLAPHSGAHSAHILSAAPIQVGQPA 553

Query: 103 L---------GSTPLTSRRQPNISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPA 153
           L         GS P  S+  P      + L GVT  P     + +P  + QP     +  
Sbjct: 554 LFQMPVSLAAGSLPTQSQPAPAGPAATTVLQGVTLPPSAVAMLNTPDGLVQPATPAAATG 613

Query: 154 QLDPFYT 160
           +  P  T
Sbjct: 614 EAAPVLT 620



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 5   AVEPQ-GPALGSEP--MMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGV 61
           A  PQ  P L S P  ++LG P S  P   A      L   LP   + QP S  GP + V
Sbjct: 661 ATTPQPSPGLASSPEKIVLGQPPSATP--TAILTQDSLQMFLPQERSQQPLSAEGPHLSV 718

Query: 62  MEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSP 101
               S +++   P Q   PA     GA       D  +SP
Sbjct: 719 --PASVIVSAPPPAQDPAPATPVAKGAGLGPQAPDSQASP 756


>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
          Length = 2817

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 12/125 (9%)

Query: 9    QGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPL 68
            Q  +  S P +  +P  P    +   +P      LPA +TP P S S P        +P+
Sbjct: 1739 QAQSSASVPPLASAPLPPSTSAS---VPASTSAPLPATLTPVPASTSAPVPA--STLAPV 1793

Query: 69   LAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSP-GLGSTPLTSRRQPNISVMQSPLVGVT 127
            LA  S P P  P       AP   S     S P    +  +TS   P  +   +P++   
Sbjct: 1794 LASTSAPVPASPL------APVSASASVSASVPASTSAAAITSSSAPASAPAPTPILASV 1847

Query: 128  STPGT 132
            STP +
Sbjct: 1848 STPAS 1852


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 26/192 (13%)

Query: 19   MLGSP--TSPKP--GVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLLAGGSP 74
            ++ SP  TSP P    + Q +P       P PVT  P S+   +  V+   SP     SP
Sbjct: 5338 LMSSPAMTSPSPVSSTSPQSIPSS-----PLPVTALPTSVLVTTTDVLGTTSPESVTSSP 5392

Query: 75   P--------QPVV---PAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSPL 123
            P        +P      AH + +      +   ++ + G G    +S    + +   +PL
Sbjct: 5393 PNLSSITHERPATYKDTAHTEAAMHHSTNTAVTNVGTSGSGHKSQSSVLADSETSKATPL 5452

Query: 124  VGVTSTPGTGQSMFSPASIGQPRK------TTLSPAQLDPFYTQGDSLTSEDHLDDSWVT 177
            +  TST G      S  +I Q  +       +LSP   +   ++  S T+E +   S+V 
Sbjct: 5453 MSTTSTLGDTSVSTSTPNISQTNQIQTEPTASLSPRLRESSTSEKTSSTTETNTAFSYVP 5512

Query: 178  VFGFPQASASYI 189
                 QAS + I
Sbjct: 5513 TGAITQASRTEI 5524


>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
          Length = 2303

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 17/141 (12%)

Query: 8    PQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVT-PQPRSISGPSVGVMEMRS 66
            P+ PA   +P      T   PGV A  L G  +  +P+P    QP+   GP     ++  
Sbjct: 1765 PRSPAGPEKPRGTQKTT---PGVPA-VLRGRTVIYVPSPAPRAQPKGTPGPRATPRKVAP 1820

Query: 67   PLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSPLVGV 126
            P LA     QP  PA     G    RS++    +     + L +  QP  S   +P   +
Sbjct: 1821 PCLA-----QPAAPAKVPSPGQQRSRSLHRPAKT-----SELATLSQPPRSA--TPPARL 1868

Query: 127  TSTPGTGQSMFSPASIGQPRK 147
              TP +  S  SPAS   PRK
Sbjct: 1869 AKTPSSSSSQTSPASQPLPRK 1889


>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
          Length = 5478

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 50/180 (27%), Positives = 66/180 (36%), Gaps = 22/180 (12%)

Query: 14   GSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSV--GVMEMRSPLLAG 71
            GS    L   +S  PG+  +    F         TP P S +   V       RSP    
Sbjct: 1114 GSPRTTLSPASSTSPGLQGEST-AFQTHPASTHTTPSPPSTATAPVEESTTYHRSP---- 1168

Query: 72   GSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTP-------------LTSRRQPNISV 118
            GS P    PA    SG     +I+   S    G+TP              TSR  P  S 
Sbjct: 1169 GSTPTTHFPASSTTSGHSEKSTIFHS-SPDASGTTPSSAHSTTSGRGESTTSRISPG-ST 1226

Query: 119  MQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDSWVTV 178
              + L G T+TPG  ++  +  S  +   TTLSPA +       +S TS      +  TV
Sbjct: 1227 EITTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTV 1286



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 50/180 (27%), Positives = 66/180 (36%), Gaps = 22/180 (12%)

Query: 14   GSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSV--GVMEMRSPLLAG 71
            GS    L   +S  PG+  +    F         TP P S +   V       RSP    
Sbjct: 2197 GSPRTTLSPASSTSPGLQGEST-AFQTHPASTHTTPSPPSTATAPVEESTTYHRSP---- 2251

Query: 72   GSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTP-------------LTSRRQPNISV 118
            GS P    PA    SG     +I+   S    G+TP              TSR  P  S 
Sbjct: 2252 GSTPTTHFPASSTTSGHSEKSTIFHS-SPDASGTTPSSAHSTTSGRGESTTSRISPG-ST 2309

Query: 119  MQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDSWVTV 178
              + L G T+TPG  ++  +  S  +   TTLSPA +       +S TS      +  TV
Sbjct: 2310 EITTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTV 2369



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 50/180 (27%), Positives = 66/180 (36%), Gaps = 22/180 (12%)

Query: 14   GSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSV--GVMEMRSPLLAG 71
            GS    L   +S  PG+  +    F         TP P S +   V       RSP    
Sbjct: 3754 GSPRTTLSPASSTSPGLQGEST-AFQTHPASTHTTPSPPSTATAPVEESTTYHRSP---- 3808

Query: 72   GSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTP-------------LTSRRQPNISV 118
            GS P    PA    SG     +I+   S    G+TP              TSR  P  S 
Sbjct: 3809 GSTPTTHFPASSTTSGHSEKSTIFHS-SPDASGTTPSSAHSTTSGRGESTTSRISPG-ST 3866

Query: 119  MQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDSWVTV 178
              + L G T+TPG  ++  +  S  +   TTLSPA +       +S TS      +  TV
Sbjct: 3867 EITTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTV 3926



 Score = 37.4 bits (85), Expect = 0.018
 Identities = 50/180 (27%), Positives = 66/180 (36%), Gaps = 22/180 (12%)

Query: 14   GSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSV--GVMEMRSPLLAG 71
            GS    L   +S  PG+  +    F         TP P S +   V       RSP    
Sbjct: 2671 GSPRTTLSPASSTSPGLQGESTT-FQTHPASTHTTPSPPSTATAPVEESTTYHRSP---- 2725

Query: 72   GSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTP-------------LTSRRQPNISV 118
            GS P    PA    SG     +I+   S    G+TP              TSR  P  S 
Sbjct: 2726 GSTPTTHFPASSTTSGHSEKSTIFHS-SPDASGTTPSSAHSTTSGRGESTTSRISPG-ST 2783

Query: 119  MQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDSWVTV 178
              + L G T+TPG  ++  +  S  +   TTLSPA +       +S TS      +  TV
Sbjct: 2784 EITTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTV 2843



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 19/124 (15%)

Query: 55  SGPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSG-------------APPVRSIYDDISSP 101
           S PSV V +     ++ GS     +P    K G             +P    +   ++S 
Sbjct: 599 STPSVLVGDSTPSPISSGSMETTALPGSTTKPGLSEKSTTFYSSPRSPDTTHLPASMTSS 658

Query: 102 GLGSTPLTSRRQPNISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSP-----AQLD 156
           G+     TS  +P  S   +   G T+ PG  Q   +  S   P  TTLSP     + L 
Sbjct: 659 GVSEESTTSHSRPG-STHTTAFPGSTTMPGLSQESTASHSSPGPTDTTLSPGSTTASSLG 717

Query: 157 PFYT 160
           P YT
Sbjct: 718 PEYT 721



 Score = 28.5 bits (62), Expect = 8.5
 Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 99   SSPGLGSTPLTSRR--------QPNISVMQSPLVGVTSTPGT----GQSMFSPASIGQPR 146
            SSPG   T L   R        +P  S + S     T+ PG+    G S  S      PR
Sbjct: 1640 SSPGATGTALFPTRSATSVLVGEPTTSPISSGSTETTALPGSTTTAGLSEKSTTFYSSPR 1699

Query: 147  K--TTLSPAQLDPFYTQGDSLTSEDHLDDSWVTVF 179
               TTLSPA         +S TS      +  T F
Sbjct: 1700 SPDTTLSPASTTSSGVSEESTTSHSRPGSTHTTAF 1734



 Score = 28.5 bits (62), Expect = 8.5
 Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 99   SSPGLGSTPLTSRR--------QPNISVMQSPLVGVTSTPGT----GQSMFSPASIGQPR 146
            SSPG   T L   R        +P  S + S     T+ PG+    G S  S      PR
Sbjct: 3197 SSPGATGTALFPTRSATSVLVGEPTTSPISSGSTETTALPGSTTTAGLSEKSTTFYSSPR 3256

Query: 147  K--TTLSPAQLDPFYTQGDSLTSEDHLDDSWVTVF 179
               TTLSPA         +S TS      +  T F
Sbjct: 3257 SPDTTLSPASTTSSGVSEESTTSHSRPGSTHTTAF 3291


>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
           sapiens]
          Length = 2036

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 50/180 (27%), Positives = 66/180 (36%), Gaps = 22/180 (12%)

Query: 14  GSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSV--GVMEMRSPLLAG 71
           GS    L   +S  PG+  +    F         TP P S +   V       RSP    
Sbjct: 601 GSPRTTLSPASSTSPGLQGEST-AFQTHPASTHTTPSPPSTATAPVEESTTYHRSP---- 655

Query: 72  GSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTP-------------LTSRRQPNISV 118
           GS P    PA    SG     +I+   S    G+TP              TSR  P  S 
Sbjct: 656 GSTPTTHFPASSTTSGHSEKSTIFHS-SPDASGTTPSSAHSTTSGRGESTTSRISPG-ST 713

Query: 119 MQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQGDSLTSEDHLDDSWVTV 178
             + L G T+TPG  ++  +  S  +   TTLSPA +       +S TS      +  TV
Sbjct: 714 EITTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTV 773



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 19/124 (15%)

Query: 55  SGPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSG-------------APPVRSIYDDISSP 101
           S PSV V +     ++ GS     +P    K G             +P    +   ++S 
Sbjct: 86  STPSVLVGDSTPSPISSGSMETTALPGSTTKPGLSEKSTTFYSSPRSPDTTHLPASMTSS 145

Query: 102 GLGSTPLTSRRQPNISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSP-----AQLD 156
           G+     TS  +P  S   +   G T+ PG  Q   +  S   P  TTLSP     + L 
Sbjct: 146 GVSEESTTSHSRPG-STHTTAFPGSTTMPGLSQESTASHSSPGPTDTTLSPGSTTASSLG 204

Query: 157 PFYT 160
           P YT
Sbjct: 205 PEYT 208



 Score = 28.5 bits (62), Expect = 8.5
 Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 14/95 (14%)

Query: 99   SSPGLGSTPLTSRR--------QPNISVMQSPLVGVTSTPGT----GQSMFSPASIGQPR 146
            SSPG   T L   R        +P  S + S     T+ PG+    G S  S      PR
Sbjct: 1127 SSPGATGTALFPTRSATSVLVGEPTTSPISSGSTETTALPGSTTTAGLSEKSTTFYSSPR 1186

Query: 147  K--TTLSPAQLDPFYTQGDSLTSEDHLDDSWVTVF 179
               TTLSPA         +S TS      +  T F
Sbjct: 1187 SPDTTLSPASTTSSGVSEESTTSHSRPGSTHTTAF 1221


>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 3 [Homo sapiens]
          Length = 774

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 30/177 (16%)

Query: 3   AFAVEPQGPALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQ--PRSISGPSVG 60
           A  V  + P+ G++  + G P   +P V+A      +  ++   +T Q  P  +S  S  
Sbjct: 582 ARGVRGRAPSTGAQ--LSGKPVLWEPLVHAPLQAAAVTSNVAIALTHQRGPLPLSPDSPA 639

Query: 61  VMEMRSPLLAGGSPPQPVVP------AHKDKSGAPPVRSIYDDIS------------SPG 102
            +  RS   + GSP  P+VP      A   +  APP R+++  +S             PG
Sbjct: 640 TLLARSAWRSAGSPASPLVPVRAGPWASTSRLPAPPARTLHASLSRAGRSQVSLLGPPPG 699

Query: 103 LGSTPLTSRRQPNISVMQSPLV------GVTSTPGTGQSMFSPAS-IGQPRKTTLSP 152
            G   L  R +P +S  Q  L       G     G+G     P+  + +P +T   P
Sbjct: 700 GGGRRLGPRGRP-LSASQPSLPQRATGDGSPGRKGSGSERLPPSGLLAKPPRTAQPP 755


>gi|116174780 SEC24 related gene family, member A [Homo sapiens]
          Length = 1093

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 23  PTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLLAGGSPPQPVVPAH 82
           P    P +   F PG   G  PA   P  R+++  +    ++  PL       + +    
Sbjct: 193 PPLVNPPLPTTFQPGAPHGPPPAGGPPPVRALTPLTSSYRDVPQPLFNSAVNQEGITS-- 250

Query: 83  KDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSPLVGVTSTPGTGQSMFSPASI 142
              +G+  V S YD+I   GL +TP  + + P +S  +S      S P   Q+   P + 
Sbjct: 251 NTNNGSMVVHSSYDEIEGGGLLATPQLTNKNPKMS--RSVGYSYPSLPPGYQNTTPPGAT 308

Query: 143 GQPRKTTLSPA 153
           G P  +   P+
Sbjct: 309 GVPPSSLNYPS 319


>gi|16933565 protocadherin 21 precursor [Homo sapiens]
          Length = 859

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 45  APVTPQPRSISGPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRS 93
           AP  P P S++ PS G  +   P ++G   PQP  P  K K+   PV+S
Sbjct: 791 APALPPPPSVA-PSTGAAQWTVPTVSGSLTPQPTQPPPKPKTMGSPVQS 838


>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
          Length = 411

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 46/150 (30%), Positives = 59/150 (39%), Gaps = 22/150 (14%)

Query: 10  GPALGSEPM-------MLGSPTSPKPGVNAQFLPGFLMGDLPAPVT-PQPRSISGPSVGV 61
           GP  G  P+         G    P PG N   +PG + G +P P++ P P  I GP  G 
Sbjct: 155 GPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGP 214

Query: 62  MEMRSPLLAGGSPPQPVV-----PAHKDKSGAPP---VRSIYDDISSPGLGSTPLTSRRQ 113
           +   +P    G  P P+      P     SG  P      I   IS PG    P+ S  Q
Sbjct: 215 ISGPNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPIIGPIPSPAQ 274

Query: 114 -PNISVMQSPLVGVTSTPGTGQSMFSPASI 142
            P    +Q P  G   +PG    M SP S+
Sbjct: 275 IPGPGRLQGP--GPILSPG---RMRSPGSL 299


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 29/160 (18%)

Query: 15  SEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSIS---GPSVGVMEMRSPLLAG 71
           S P   G+   P P       PG ++G  P P  P P S+    GPS G   +  P+   
Sbjct: 2   STPTDPGAMPHPGPSPGPGPSPGPILGPSPGP-GPSPGSVHSMMGPSPGPPSVSHPMPTM 60

Query: 72  GS---PPQPVVPAHKDKSGAPPVRSIYDDI------------SSPGLG--STPLTSRRQP 114
           GS   P + +   HK   G    + I +DI              PG+G   +P+    Q 
Sbjct: 61  GSTDFPQEGMHQMHKPIDGIHD-KGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQG 119

Query: 115 NISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQ 154
            +S   SPL       G  + + SP S G P    + P+Q
Sbjct: 120 YMSPHPSPL-------GAPEHVSSPMSGGGPTPPQMPPSQ 152


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 29/160 (18%)

Query: 15  SEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSIS---GPSVGVMEMRSPLLAG 71
           S P   G+   P P       PG ++G  P P  P P S+    GPS G   +  P+   
Sbjct: 2   STPTDPGAMPHPGPSPGPGPSPGPILGPSPGP-GPSPGSVHSMMGPSPGPPSVSHPMPTM 60

Query: 72  GS---PPQPVVPAHKDKSGAPPVRSIYDDI------------SSPGLG--STPLTSRRQP 114
           GS   P + +   HK   G    + I +DI              PG+G   +P+    Q 
Sbjct: 61  GSTDFPQEGMHQMHKPIDGIHD-KGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQG 119

Query: 115 NISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQ 154
            +S   SPL       G  + + SP S G P    + P+Q
Sbjct: 120 YMSPHPSPL-------GAPEHVSSPMSGGGPTPPQMPPSQ 152


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 41/156 (26%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 5    AVEPQGPALG-SEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPV---TPQPRSISGPSVG 60
            A  P  P  G + P   G+PT P         P  L G L  P     P P  ++ PS  
Sbjct: 1245 AATPPSPKGGPATPPPKGAPTPPAA------TPPSLKGGLATPPHKGAPNPAVVTPPSPK 1298

Query: 61   VMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQ 120
                 SP     +PP    P+ K   G PP +      + P +  TP + +  P +    
Sbjct: 1299 GGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGA---PTPPAV--TPPSPKGTPTLPATT 1353

Query: 121  SPLVGVTSTPGTGQSMFSPASI----GQPRKTTLSP 152
                G  +TP + +    PA+     G P  T  SP
Sbjct: 1354 PSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSP 1389



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 43/191 (22%), Positives = 66/191 (34%), Gaps = 30/191 (15%)

Query: 5    AVEPQGPALGSEPMMLGSPTSPKPG------VNAQFLPGFLMGD-LPAPVTPQPRSIS-G 56
            AV P  P     P  + + +SPK        + A  LP  +       P TP  R     
Sbjct: 1469 AVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIA 1528

Query: 57   PSVGVMEMRSPLLAGGS----PPQPVVPAHKDKSGAP-----PVRSIYDDISSPGLGSTP 107
            P+  ++  ++P          PP   VP+ K     P     P      + SSP    TP
Sbjct: 1529 PTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPP-AVTP 1587

Query: 108  LTSRRQPNI------------SVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQL 155
             T +  P+             S  ++P     + P   +   +PA  G P    ++P+ L
Sbjct: 1588 STYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSL 1647

Query: 156  DPFYTQGDSLT 166
                T   S+T
Sbjct: 1648 KDSPTSPASVT 1658



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 33/140 (23%), Positives = 48/140 (34%), Gaps = 5/140 (3%)

Query: 14   GSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLLAGGS 73
            G+      +P SPK    A  LP    G    P    P    GP+   ++  +P     +
Sbjct: 1031 GASTPPAATPPSPKGSPAATPLP---KGAPTTPAATLPSPKGGPATPSLK-GAPTPPAAT 1086

Query: 74   PPQPVV-PAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSPLVGVTSTPGT 132
            PP P   PA     GAP   +        GL + P         +   SP  G+ + P  
Sbjct: 1087 PPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPK 1146

Query: 133  GQSMFSPASIGQPRKTTLSP 152
            G      A+   P+    +P
Sbjct: 1147 GAPTTPAATPPSPKGGLATP 1166



 Score = 29.3 bits (64), Expect = 5.0
 Identities = 43/182 (23%), Positives = 59/182 (32%), Gaps = 23/182 (12%)

Query: 2    AAFAVEPQG-----PALGSEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQ--PRSI 54
            AA    P+G     P  G+      +P SPK G+      G       AP TP   P S 
Sbjct: 1130 AATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKG-------APTTPAATPPSP 1182

Query: 55   SGPSVGVMEMRSPLLAGGSPPQP----VVPAHKDKSGAPPVR--SIYDDISSP---GLGS 105
             G         +P     +PP P      P+ K     P     S    +++P   G  +
Sbjct: 1183 KGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPT 1242

Query: 106  TPLTSRRQPNISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYTQGDSL 165
            TP  +   P       P  G  + P              P K   +PA + P   +G   
Sbjct: 1243 TPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPA 1302

Query: 166  TS 167
            TS
Sbjct: 1303 TS 1304


>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
           sapiens]
          Length = 1309

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 25/168 (14%)

Query: 11  PALGSEPMMLGS---PTSPK-----------PGVNAQFLPGFLMGD-----LPAPVTPQP 51
           P  G  P +L +    T PK           PG      P F++G+        PV P+P
Sbjct: 769 PERGPSPSLLNTISLDTMPKFAFSSEDEGVGPGPAGPKRPVFILGEPDPPPAATPVMPKP 828

Query: 52  RSISGPSVGVMEMR---SPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPL 108
            S+S  +  +   R   + + A  S P+P+      + G P   +     +S   GS   
Sbjct: 829 SSLSADTAALSHARLRSNSIGARHSTPRPLDAGRGRRLGGPRDPAPEKSRASSSGGSGGG 888

Query: 109 TSRRQPNISVMQSPLVGVTSTPGTGQSMFSPASIGQPRKTTLSPAQLD 156
           +  R P  + + +  + +T+  G+G  + SP S   PR  + +P+  D
Sbjct: 889 SGGRVPKSASVSALSLIITADDGSGGPLMSPLS---PRSLSSNPSSRD 933


>gi|11386183 WAS protein family, member 2 [Homo sapiens]
          Length = 498

 Score = 35.8 bits (81), Expect = 0.053
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 20/76 (26%)

Query: 20  LGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLLAG--GSPPQP 77
           LGSP  PKPG    F P       PAP  P P     P +G+     P+  G  G+PP P
Sbjct: 306 LGSPPGPKPG----FAPP------PAPPPPPP-----PMIGIPPPPPPVGFGSPGTPPPP 350

Query: 78  VVPA---HKDKSGAPP 90
             P+   H D +  PP
Sbjct: 351 SPPSFPPHPDFAAPPP 366



 Score = 28.5 bits (62), Expect = 8.5
 Identities = 26/96 (27%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 8   PQGPALG----SEPMMLGSPTSPKPGVNAQFLPGFLMGDLPAPVTPQ--------PRSIS 55
           P  P +G      P+  GSP +P P     F P       P P  P         P  +S
Sbjct: 325 PPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLS 384

Query: 56  GPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPV 91
            P+ G      P    G PP P   A    +  PP+
Sbjct: 385 QPTGGAPPPPPPPPPPGPPPPPFTGADGQPAIPPPL 420


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,003,388
Number of Sequences: 37866
Number of extensions: 881804
Number of successful extensions: 3545
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 288
Number of HSP's that attempted gapping in prelim test: 2978
Number of HSP's gapped (non-prelim): 834
length of query: 326
length of database: 18,247,518
effective HSP length: 103
effective length of query: 223
effective length of database: 14,347,320
effective search space: 3199452360
effective search space used: 3199452360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.