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Search of human proteins with 31543667
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31543667 suppressor of var1, 3-like 1 [Homo sapiens]
(786 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31543667 suppressor of var1, 3-like 1 [Homo sapiens] 1583 0.0
gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sap... 40 0.008
gi|193211480 superkiller viralicidic activity 2-like 2 [Homo sap... 39 0.019
gi|14591902 RecQ protein-like [Homo sapiens] 38 0.042
gi|14591904 RecQ protein-like [Homo sapiens] 38 0.042
gi|21071032 DEAD-box protein abstrakt [Homo sapiens] 35 0.27
gi|67782311 superkiller viralicidic activity 2-like homolog [Hom... 35 0.35
gi|62526045 zinc finger protein 638 [Homo sapiens] 35 0.35
gi|21626468 zinc finger protein 638 [Homo sapiens] 35 0.35
gi|4557365 Bloom syndrome protein [Homo sapiens] 34 0.46
gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapi... 34 0.46
gi|40807471 transcription termination factor, RNA polymerase II ... 33 0.78
gi|33469968 minichromosome maintenance complex component 7 isofo... 33 1.3
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 32 1.7
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 32 1.7
gi|4826690 DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Homo sapiens] 32 2.3
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap... 32 2.3
gi|164607156 axonemal dynein light chain 1 [Homo sapiens] 32 2.3
gi|167001643 mevalonate kinase [Homo sapiens] 31 3.9
gi|4557769 mevalonate kinase [Homo sapiens] 31 3.9
gi|139394648 DNA polymerase theta [Homo sapiens] 31 3.9
gi|31542634 filamin A interacting protein 1 [Homo sapiens] 31 3.9
gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens] 31 5.1
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens] 31 5.1
gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens] 31 5.1
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 30 6.6
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 30 6.6
gi|5579478 mitogen-activated protein kinase kinase 1 [Homo sapiens] 30 8.7
gi|237681069 spatacsin isoform 2 [Homo sapiens] 30 8.7
gi|93204888 spatacsin isoform 1 [Homo sapiens] 30 8.7
>gi|31543667 suppressor of var1, 3-like 1 [Homo sapiens]
Length = 786
Score = 1583 bits (4100), Expect = 0.0
Identities = 786/786 (100%), Positives = 786/786 (100%)
Query: 1 MSFSRALLWARLPAGRQAGHRAAICSALRPHFGPFPGVLGQVSVLATASSSASGGSKIPN 60
MSFSRALLWARLPAGRQAGHRAAICSALRPHFGPFPGVLGQVSVLATASSSASGGSKIPN
Sbjct: 1 MSFSRALLWARLPAGRQAGHRAAICSALRPHFGPFPGVLGQVSVLATASSSASGGSKIPN 60
Query: 61 TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF 120
TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF
Sbjct: 61 TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF 120
Query: 121 HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLR 180
HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLR
Sbjct: 121 HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLR 180
Query: 181 KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEI 240
KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEI
Sbjct: 181 KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEI 240
Query: 241 FEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA 300
FEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA
Sbjct: 241 FEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA 300
Query: 301 RGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALES 360
RGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALES
Sbjct: 301 RGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALES 360
Query: 361 LDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI 420
LDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI
Sbjct: 361 LDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI 420
Query: 421 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKE 480
LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKE
Sbjct: 421 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKE 480
Query: 481 GEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFS 540
GEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFS
Sbjct: 481 GEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFS 540
Query: 541 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRN 600
QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRN
Sbjct: 541 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRN 600
Query: 601 EPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQK 660
EPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQK
Sbjct: 601 EPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQK 660
Query: 661 ELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKA 720
ELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKA
Sbjct: 661 ELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKA 720
Query: 721 TEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKK 780
TEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKK
Sbjct: 721 TEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKK 780
Query: 781 KEPDSD 786
KEPDSD
Sbjct: 781 KEPDSD 786
>gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo
sapiens]
Length = 796
Score = 40.0 bits (92), Expect = 0.008
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 25/138 (18%)
Query: 374 SKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL 433
+K + + + + GL+ ++G+L +L ++F D + ILVATD GL++
Sbjct: 472 TKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKD--EQIDILVATDVAARGLDI 529
Query: 434 S-IRRIIFYSL---IKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 489
++ +I +++ IK ++ G AGRAGR V+ + +
Sbjct: 530 EGVKTVINFTMPNTIKHYVHRVGRTAR-----------AGRAGR--------SVSLVGED 570
Query: 490 DLSLLKEILKRPVDPIRA 507
+ +LKEI+K P++A
Sbjct: 571 ERKMLKEIVKAAKAPVKA 588
>gi|193211480 superkiller viralicidic activity 2-like 2 [Homo
sapiens]
Length = 1042
Score = 38.9 bits (89), Expect = 0.019
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 419 KILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRF 478
K L AT+ MG+N+ R ++F + + ++ I++ + +Q++GRAGR
Sbjct: 477 KALFATETFAMGINMPARTVLF-----TNARKFDGKDFRWISSGEYIQMSGRAGR-RGMD 530
Query: 479 KEGEVTTMNHEDLS--LLKEILKRPVDPIRAA 508
G V M E +S + K++LK DP+ +A
Sbjct: 531 DRGIVILMVDEKMSPTIGKQLLKGSADPLNSA 562
Score = 32.3 bits (72), Expect = 1.7
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 206 SGPTNSGKTY---HAIQKYFSAKSGV-YCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVT 261
S T++GKT +AI K V + P+K L+++ + + L+TG+ VT
Sbjct: 160 SAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGD--VT 217
Query: 262 VQPNGKQASHVSCTVEMC--------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC 313
+ P AS + T E+ V + DEI +RD RG W ++ L
Sbjct: 218 INPT---ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETII-LL 273
Query: 314 AEEVH 318
+ VH
Sbjct: 274 PDNVH 278
>gi|14591902 RecQ protein-like [Homo sapiens]
Length = 649
Score = 37.7 bits (86), Expect = 0.042
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 17/105 (16%)
Query: 370 IVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGM 429
I CFS+ D V+ ++ G+ + + +L P K +K++ + +++VAT A GM
Sbjct: 319 IYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS--ANEIQVVVATVAFGM 376
Query: 430 GLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 473
G++ +R +I +S+ K N Q +GRAGR
Sbjct: 377 GIDKPDVRFVIHHSMSKSMEN--------------YYQESGRAGR 407
>gi|14591904 RecQ protein-like [Homo sapiens]
Length = 649
Score = 37.7 bits (86), Expect = 0.042
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 17/105 (16%)
Query: 370 IVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGM 429
I CFS+ D V+ ++ G+ + + +L P K +K++ + +++VAT A GM
Sbjct: 319 IYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS--ANEIQVVVATVAFGM 376
Query: 430 GLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 473
G++ +R +I +S+ K N Q +GRAGR
Sbjct: 377 GIDKPDVRFVIHHSMSKSMEN--------------YYQESGRAGR 407
>gi|21071032 DEAD-box protein abstrakt [Homo sapiens]
Length = 622
Score = 35.0 bits (79), Expect = 0.27
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 324 AAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSR 383
A++D++ E+ Y E V + LE L P I K D+ ++
Sbjct: 404 ASLDVIQEVEYVKEEAKMV-------------YLLECLQKTPPPVLIFAEKKADVDAIHE 450
Query: 384 QIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYS 442
+ ++G+E+ I+G + + F + +LVATD GL+ +I+ +I Y
Sbjct: 451 YLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK--DVLVATDVASKGLDFPAIQHVINYD 508
Query: 443 L 443
+
Sbjct: 509 M 509
>gi|67782311 superkiller viralicidic activity 2-like homolog [Homo
sapiens]
Length = 1246
Score = 34.7 bits (78), Expect = 0.35
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 419 KILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 473
K+L AT+ MG+N+ R ++F S+ K + R+L P + +Q+AGRAGR
Sbjct: 657 KVLFATETFAMGVNMPARTVVFDSMRKH--DGSTFRDLLP---GEYVQMAGRAGR 706
>gi|62526045 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 34.7 bits (78), Expect = 0.35
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 336 TGEEVEVRDYKRLTPISVLDHALESLDNLR---PGDCIVCFSKNDIYSVSRQIEIRGLES 392
T + +EVR Y P +++ +S N+ P ++C S + V RQ++ G S
Sbjct: 220 TEDPLEVRIYDPEIPTDEVENEFQSQQNISASVPNPNVICNSMFPVEDVFRQMDFPGESS 279
Query: 393 AV-IYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEK 451
+ S+ GTK++ + +L ++ +N ++ + + SLI PS+N++
Sbjct: 280 NNRSFFSVESGTKMSGLHISGGQS----VLEPIKSVNQSINQTVSQTMSQSLIPPSMNQQ 335
>gi|21626468 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 34.7 bits (78), Expect = 0.35
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 336 TGEEVEVRDYKRLTPISVLDHALESLDNLR---PGDCIVCFSKNDIYSVSRQIEIRGLES 392
T + +EVR Y P +++ +S N+ P ++C S + V RQ++ G S
Sbjct: 220 TEDPLEVRIYDPEIPTDEVENEFQSQQNISASVPNPNVICNSMFPVEDVFRQMDFPGESS 279
Query: 393 AV-IYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEK 451
+ S+ GTK++ + +L ++ +N ++ + + SLI PS+N++
Sbjct: 280 NNRSFFSVESGTKMSGLHISGGQS----VLEPIKSVNQSINQTVSQTMSQSLIPPSMNQQ 335
>gi|4557365 Bloom syndrome protein [Homo sapiens]
Length = 1417
Score = 34.3 bits (77), Expect = 0.46
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 350 PISVLDHALESLDNLRPGDC--IVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQ 407
P V LE + P D I C S+ + +++ ++ GL + + L +
Sbjct: 871 PKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEV 930
Query: 408 AKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQ 466
+K+ + D C+++ AT A GMG++ +R +I SL P + Q
Sbjct: 931 QQKWIN-QDGCQVICATIAFGMGIDKPDVRFVIHASL--------------PKSVEGYYQ 975
Query: 467 IAGRAGRFSSRFKEGEVT----TMNHEDLSLLKEILKRPVDPIRAAGLHPTAE 515
+GRAGR +GE++ + D++ LK ++ D G H T E
Sbjct: 976 ESGRAGR------DGEISHCLLFYTYHDVTRLKRLIMMEKD-----GNHHTRE 1017
>gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo
sapiens]
Length = 631
Score = 34.3 bits (77), Expect = 0.46
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 359 ESLDNLRPGDCIVCF--SKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND 416
E ++N+ P D ++ F K+ +S I+G+ + ++G+ + + F N
Sbjct: 459 EFVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGN- 517
Query: 417 PCKILVATDAIGMGLNLS 434
KIL+ TD + GL+L+
Sbjct: 518 -IKILITTDIVSRGLDLN 534
>gi|40807471 transcription termination factor, RNA polymerase II [Homo
sapiens]
Length = 1162
Score = 33.5 bits (75), Expect = 0.78
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 349 TPISVLDHALESLDNLRPGDCIVCFSK--NDIYSVSRQIEIRGLESAVIYGSLPPGTKLA 406
T IS L LE++ V S+ N + V+ ++ GL A I GS+ P ++
Sbjct: 991 TKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMD 1050
Query: 407 QAKKFNDPNDPCKILVATDAIGMGLNLS 434
+ FN P +L++ A G+GLNL+
Sbjct: 1051 LVEAFNHSRGPQVMLISLLAGGVGLNLT 1078
>gi|33469968 minichromosome maintenance complex component 7 isoform
1 [Homo sapiens]
Length = 719
Score = 32.7 bits (73), Expect = 1.3
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 88 LDKNEVKKVLDKFYKRKEIQKLGADYGLD-ARLFHQAFISFRNYIMQSHSLDVDIHIVLN 146
L+K +VKK L +FY+ E+ K YG RL H+ ++ Y+ + D +V +
Sbjct: 8 LEKEKVKKFLQEFYQDDELGKKQFKYGNQLVRLAHREQVAL--YVDLDDVAEDDPELV-D 64
Query: 147 DICFGAAH--------ADDLFPFFLRHAKQIFPVLDCKDDLRKISD--------LRIPPN 190
IC A +L P + VLD + R + + +R P N
Sbjct: 65 SICENARRYAKLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGMVRSPQN 124
Query: 191 WYPDARAMQRKIIFHSGPTNS 211
YP A M+R ++ GP+++
Sbjct: 125 QYP-AELMRRFELYFQGPSSN 144
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 32.3 bits (72), Expect = 1.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 749 KQLEKEWMTQQTEHNKEKTESGTHPKGTRRKKKEPD 784
K+ EK+ T++TE KEK E K R+KKKE +
Sbjct: 38 KEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEE 73
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 32.3 bits (72), Expect = 1.7
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 397 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEREL 456
GS+PPG + + +FN+ +L+ T G+GLNL+ + + E +
Sbjct: 1679 GSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFV----------EHDW 1728
Query: 457 EPITTSQALQIAGRAGR 473
P+ QA+ A R G+
Sbjct: 1729 NPMRDLQAMDRAHRIGQ 1745
>gi|4826690 DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Homo sapiens]
Length = 1220
Score = 32.0 bits (71), Expect = 2.3
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 28/161 (17%)
Query: 330 MELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRG 389
+E++YT E + D +T + + H E PGD +V + + + +I
Sbjct: 744 VEILYTKEPETDYLDASLITVMQI--HLTEP-----PGDILVFLTGQEEIDTACEILYER 796
Query: 390 LESA----------VIYGSLPPGTKLAQAKKFNDPNDPC--KILVATDAIGMGLNLS-IR 436
++S +Y +LP + + DP P K+++AT+ L + I
Sbjct: 797 MKSLGPDVPELIILPVYSALPSEMQT----RIFDPAPPGSRKVVIATNIAETSLTIDGIY 852
Query: 437 RIIFYSLIKPSI-NEK---GERELEPITTSQALQIAGRAGR 473
++ +K + N K + + PI+ +QA Q AGRAGR
Sbjct: 853 YVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGR 893
>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo
sapiens]
Length = 1555
Score = 32.0 bits (71), Expect = 2.3
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 692 PSGSQSRLSGTLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQL 751
P Q +S T +A + R + A S E P + + A R +Q + P +K+
Sbjct: 503 PKRRQRSMSPTSTPKAGKIRQSGAKQSHMEEFTPPSREDRN-AKRSTKQDIRDPRRMKKT 561
Query: 752 EKEWMTQQTEHNKEKTESGTHPK 774
E+E + T N+ T+SGT PK
Sbjct: 562 EEERPQETT--NQHSTKSGTEPK 582
>gi|164607156 axonemal dynein light chain 1 [Homo sapiens]
Length = 190
Score = 32.0 bits (71), Expect = 2.3
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 621 NIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQ 659
NIK+L LEAV D L+ LW+SY F++ +++ L+
Sbjct: 81 NIKNLNGLEAVGDTLE-ELWISYNFIEKLKGIHIMKKLK 118
>gi|167001643 mevalonate kinase [Homo sapiens]
Length = 396
Score = 31.2 bits (69), Expect = 3.9
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 427 IGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM 486
+ + ++L++R + ++P N K + L I +A +A +S ++G+VTT
Sbjct: 27 VALAVSLNLRTFL---RLQPHSNGKVDLSLPNIGIKRAWDVARLQSLDTSFLEQGDVTTP 83
Query: 487 NHEDLSLLKEILKRPVD 503
E + LKE+ P D
Sbjct: 84 TSEQVEKLKEVAGLPDD 100
>gi|4557769 mevalonate kinase [Homo sapiens]
Length = 396
Score = 31.2 bits (69), Expect = 3.9
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 427 IGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM 486
+ + ++L++R + ++P N K + L I +A +A +S ++G+VTT
Sbjct: 27 VALAVSLNLRTFL---RLQPHSNGKVDLSLPNIGIKRAWDVARLQSLDTSFLEQGDVTTP 83
Query: 487 NHEDLSLLKEILKRPVD 503
E + LKE+ P D
Sbjct: 84 TSEQVEKLKEVAGLPDD 100
>gi|139394648 DNA polymerase theta [Homo sapiens]
Length = 2590
Score = 31.2 bits (69), Expect = 3.9
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 354 LDHALESLDNLRPGDCI-VCFSKNDIYSVSRQIEI--RGLESAVIYGSLPPGTKLAQAKK 410
L H E L ++P +C V + ++ V Q+ GL+S V+ ++P G A
Sbjct: 364 LHHQAEGL--VKPSECPPVILEQKELLEVMDQLRRLPSGLDS-VLQKTVPWGVAFHHAGL 420
Query: 411 FNDPNDPC---------KILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITT 461
+ D ++L AT + G+NL RR+I + I G R L+ +T
Sbjct: 421 TFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPI------FGGRPLDILTY 474
Query: 462 SQALQIAGRAG 472
Q + AGR G
Sbjct: 475 KQMVGRAGRKG 485
>gi|31542634 filamin A interacting protein 1 [Homo sapiens]
Length = 1213
Score = 31.2 bits (69), Expect = 3.9
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 19/129 (14%)
Query: 654 LIRDLQK--ELDGIIQDGVHNITK-----LIKM-SETHKLLNLEGFPSGSQSRLSGTLKS 705
LI + +K +L +++ V+N+T+ + K+ SE K L + RL G +
Sbjct: 547 LIEESKKLLKLKSEMEEKVYNLTRERDELIGKLKSEEEKSSELSCSVDLLKKRLDGIEEV 606
Query: 706 QARRTRGTKALGSKATEPPSPDAGELS-----LASRLVQQGLLTPDMLK------QLEKE 754
+ TRG GS+ T P EL+ L RL Q ++ D++K QLE++
Sbjct: 607 EREITRGRSRKGSELTCPEDNKIKELTLEIERLKKRLQQLEVVEGDLMKTEDEYDQLEQK 666
Query: 755 WMTQQTEHN 763
+ T+Q + N
Sbjct: 667 FRTEQDKAN 675
>gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]
Length = 1805
Score = 30.8 bits (68), Expect = 5.1
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 424 TDAIGMGLNLSIRRIIFYSLIKPSINEKGE--RELEPITTSQALQIAGRAGRFSSRFKEG 481
T+ + GL+L + R+ +L+KP E + +E+E QI+G ++F++
Sbjct: 813 TELVPYGLSLRLARLCTENLLKPDTRECAQLRQEVEENLNEVYRQISGVHKLQQTKFRQ- 871
Query: 482 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYH 523
+ +D +++ +L P + A L T +Q+E A+H
Sbjct: 872 QPNAGKKQDHTIVDTVLMAP-RSAKPALLKLTEKQVEQRAFH 912
>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
Length = 1822
Score = 30.8 bits (68), Expect = 5.1
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 424 TDAIGMGLNLSIRRIIFYSLIKPSINEKGE--RELEPITTSQALQIAGRAGRFSSRFKEG 481
T+ + GL+L + R+ +L+KP E + +E+E QI+G ++F++
Sbjct: 813 TELVPYGLSLRLARLCTENLLKPDTRECAQLRQEVEENLNEVYRQISGVHKLQQTKFRQ- 871
Query: 482 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYH 523
+ +D +++ +L P + A L T +Q+E A+H
Sbjct: 872 QPNAGKKQDHTIVDTVLMAP-RSAKPALLKLTEKQVEQRAFH 912
>gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens]
Length = 1752
Score = 30.8 bits (68), Expect = 5.1
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 424 TDAIGMGLNLSIRRIIFYSLIKPSINEKGE--RELEPITTSQALQIAGRAGRFSSRFKEG 481
T+ + GL+L + R+ +L+KP E + +E+E QI+G ++F++
Sbjct: 813 TELVPYGLSLRLARLCTENLLKPDTRECAQLRQEVEENLNEVYRQISGVHKLQQTKFRQ- 871
Query: 482 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYH 523
+ +D +++ +L P + A L T +Q+E A+H
Sbjct: 872 QPNAGKKQDHTIVDTVLMAP-RSAKPALLKLTEKQVEQRAFH 912
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 30.4 bits (67), Expect = 6.6
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 7 LLWARLPAGRQAGHRAAICSALRPHFGPFPG 37
LL ARLP AGHR + AL P GP PG
Sbjct: 1588 LLQARLPRKDPAGHRDDLARALGPELGP-PG 1617
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 30.4 bits (67), Expect = 6.6
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 10/157 (6%)
Query: 344 DYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGT 403
D K + VL L R + FS + + + GL+ + GS
Sbjct: 514 DPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEE 573
Query: 404 KLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQ 463
+L K+FN D LV+T A G+GLN ++ L P+ N P Q
Sbjct: 574 RLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVV--LFDPTWN--------PANDLQ 623
Query: 464 ALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKR 500
A+ A R G+ ++ E++ L++I K+
Sbjct: 624 AIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQ 660
>gi|5579478 mitogen-activated protein kinase kinase 1 [Homo sapiens]
Length = 393
Score = 30.0 bits (66), Expect = 8.7
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 433 LSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVT-TMNHEDL 491
L + R + + IKP+I + REL+ + + I G G F + +GE++ M H D
Sbjct: 92 LVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAF---YSDGEISICMEHMDG 148
Query: 492 SLLKEILKR 500
L ++LK+
Sbjct: 149 GSLDQVLKK 157
>gi|237681069 spatacsin isoform 2 [Homo sapiens]
Length = 2330
Score = 30.0 bits (66), Expect = 8.7
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 731 LSLASR-LVQQGLLTPDMLKQLEKE-WMTQQTEHNKEKTESGTHPKGTRR 778
L+LA L Q+ ++ D L++LEK+ W+ + T+H + + T P+ +R+
Sbjct: 1776 LTLAGHWLAQEDVVPLDKLEELEKQIWLCRITQHTLGRNQEETEPRFSRQ 1825
>gi|93204888 spatacsin isoform 1 [Homo sapiens]
Length = 2443
Score = 30.0 bits (66), Expect = 8.7
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 731 LSLASR-LVQQGLLTPDMLKQLEKE-WMTQQTEHNKEKTESGTHPKGTRR 778
L+LA L Q+ ++ D L++LEK+ W+ + T+H + + T P+ +R+
Sbjct: 1776 LTLAGHWLAQEDVVPLDKLEELEKQIWLCRITQHTLGRNQEETEPRFSRQ 1825
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,386,965
Number of Sequences: 37866
Number of extensions: 1354808
Number of successful extensions: 3681
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3659
Number of HSP's gapped (non-prelim): 48
length of query: 786
length of database: 18,247,518
effective HSP length: 110
effective length of query: 676
effective length of database: 14,082,258
effective search space: 9519606408
effective search space used: 9519606408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.