Guide to the Human Genome
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Name: C9orf102 Sequence: fasta or formatted (712aa) NCBI GI: 58219008
Description:

RAD26L hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         37           2
 C cysteine            2.8         20           2
 D aspartate           5.6         40           2
 E glutamate           5.8         41           2
 F phenylalanine       4.1         29           1
 G glycine             5.9         42           3
 H histidine           2.0         14           1
 I isoleucine          4.4         31           1
 K lysine              8.6         61           2
 L leucine            10.8         77           2
 M methionine          2.2         16           1
 N asparagine          4.1         29           2
 P proline             3.9         28           3
 Q glutamine           5.1         36           2
 R arginine            6.2         44           2
 S serine              6.5         46           3
 T threonine           5.6         40           2
 V valine              7.0         50           3
 W tryptophan          1.1          8           1
 Y tyrosine            3.2         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD26L hypothetical protein 
ERCC6                 0.185   excision repair cross-complementing rodent repair def...
RAD54B                0.160   RAD54 homolog B 
SMARCA1               0.157   SWI/SNF-related matrix-associated actin-dependent r...
ERCC6L                0.154   excision repair protein ERCC6-like 
SMARCA1               0.152   SWI/SNF-related matrix-associated actin-dependent re...
RAD54L                0.149   RAD54-like protein 
RAD54L                0.149   RAD54-like protein 
SMARCA5               0.149   SWI/SNF-related matrix-associated actin-dependent re...
CHD1                  0.147   chromodomain helicase DNA binding protein 1 
BTAF1                 0.144   BTAF1 RNA polymerase II, B-TFIID transcription facto...
CHD7                  0.143   chromodomain helicase DNA binding protein 7 
CHD2                  0.143   chromodomain helicase DNA binding protein 2 isoform...
CHD9                  0.142   chromodomain helicase DNA binding protein 9 
SMARCA4               0.141   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.141   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.141   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.141   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.141   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.141   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.141   SWI/SNF-related matrix-associated actin-dependent re...
CHD6                  0.141   chromodomain helicase DNA binding protein 6 
SMARCA2               0.141   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.141   SWI/SNF-related matrix-associated actin-dependent re...
CHD1L                 0.141   chromodomain helicase DNA binding protein 1-like [H...
CHD8                  0.137   chromodomain helicase DNA binding protein 8 
CHD3                  0.137   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.137   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.137   chromodomain helicase DNA binding protein 3 isoform...
CHD5                  0.134   chromodomain helicase DNA binding protein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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