Guide to the Human Genome
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Name: DDX27 Sequence: fasta or formatted (796aa) NCBI GI: 224593278
Description:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 27

Referenced in:

DEAD / H Helicase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         73           2
 C cysteine            1.1          9           1
 D aspartate           5.7         45           2
 E glutamate           9.9         79           4
 F phenylalanine       3.6         29           2
 G glycine             6.2         49           2
 H histidine           1.6         13           2
 I isoleucine          4.5         36           2
 K lysine             10.8         86           6
 L leucine             9.0         72           2
 M methionine          2.6         21           1
 N asparagine          2.5         20           1
 P proline             3.6         29           1
 Q glutamine           5.0         40           2
 R arginine            7.8         62           3
 S serine              4.6         37           2
 T threonine           5.0         40           2
 V valine              5.7         45           2
 W tryptophan          0.3          2           1
 Y tyrosine            1.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX47                 0.161   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX49                 0.149   DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 
DDX54                 0.139   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX54                 0.139   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
DDX47                 0.135   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ...
DDX18                 0.128   DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 
DDX23                 0.126   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX3X                 0.125   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX10                 0.124   DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 
DDX3Y                 0.122   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.122   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX42                 0.122   DEAD box polypeptide 42 protein 
DDX42                 0.122   DEAD box polypeptide 42 protein 
EIF4A1                0.121   eukaryotic translation initiation factor 4A isoform 1...
DDX46                 0.121   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
EIF4A2                0.120   eukaryotic translation initiation factor 4A2 
DDX4                  0.120   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.120   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.120   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
DDX41                 0.120   DEAD-box protein abstrakt 
EIF4A3                0.118   eukaryotic translation initiation factor 4A, isoform ...
DDX59                 0.117   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX56                 0.114   DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 
DDX5                  0.112   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
DDX43                 0.112   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX53                 0.111   DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 
DDX52                 0.111   ATP-dependent RNA helicase ROK1 isoform a 
BAT1                  0.111   HLA-B associated transcript 1 
BAT1                  0.111   HLA-B associated transcript 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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