Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF638 Sequence: fasta or formatted (1978aa) NCBI GI: 21626468
Description:

zinc finger protein 638

Referenced in:

Zinc Finger Proteins

Other entries for this name:
alt mRNA [1978aa] zinc finger protein 638
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6        110           3
 C cysteine            1.3         25           1
 D aspartate           5.3        104           2
 E glutamate          10.4        206           3
 F phenylalanine       3.0         59           2
 G glycine             4.5         89           2
 H histidine           1.9         37           2
 I isoleucine          4.6         90           2
 K lysine              9.3        184           4
 L leucine             6.7        132           2
 M methionine          2.3         45           2
 N asparagine          5.1        100           2
 P proline             6.2        122           2
 Q glutamine           4.2         83           2
 R arginine            5.2        102           3
 S serine             11.0        218           4
 T threonine           5.7        112           2
 V valine              6.4        127           2
 W tryptophan          0.2          4           1
 Y tyrosine            1.5         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 638 
ZNF638                1.000   zinc finger protein 638 
MATR3                 0.012   matrin 3 
MATR3                 0.012   matrin 3 
EEA1                  0.010   early endosome antigen 1, 162kD 
BOD1L                 0.010   biorientation of chromosomes in cell division 1-like...
RBBP6                 0.010   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.010   retinoblastoma-binding protein 6 isoform 1 
SRRM2                 0.010   splicing coactivator subunit SRm300 
SON                   0.009   SON DNA-binding protein isoform F 
LUC7L2                0.009   LUC7-like 2 
SON                   0.009   SON DNA-binding protein isoform B 
RBM20                 0.009   RNA binding motif protein 20 
CAST                  0.009   calpastatin isoform f 
SFRS11                0.008   splicing factor, arginine/serine-rich 11 
LOC100170229          0.008   hypothetical protein LOC100170229 
GOLGA4                0.007   golgi autoantigen, golgin subfamily a, 4 
SLTM                  0.007   modulator of estrogen induced transcription isoform ...
NEFM                  0.007   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.007   neurofilament, medium polypeptide 150kDa isoform 2 ...
CALD1                 0.007   caldesmon 1 isoform 1 
TRDN                  0.007   triadin 
WDR87                 0.007   NYD-SP11 protein 
PNN                   0.007   pinin, desmosome associated protein 
SFRS8                 0.007   splicing factor, arginine/serine-rich 8 
MYH8                  0.007   myosin, heavy chain 8, skeletal muscle, perinatal [...
CAST                  0.007   calpastatin isoform l 
SFRS12                0.007   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.007   splicing factor, arginine/serine-rich 12 isoform b [...
NEFH                  0.006   neurofilament, heavy polypeptide 200kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press