Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SPG11 Sequence: fasta or formatted (2443aa) NCBI GI: 93204888
Description:

spatacsin isoform 1

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [2330aa] spatacsin isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9        144           3
 C cysteine            2.9         70           2
 D aspartate           4.7        116           2
 E glutamate           7.7        188           3
 F phenylalanine       4.4        107           2
 G glycine             3.9         95           3
 H histidine           3.4         82           2
 I isoleucine          5.8        142           2
 K lysine              6.0        146           2
 L leucine            13.8        338           3
 M methionine          1.9         47           1
 N asparagine          4.2        103           2
 P proline             3.6         88           2
 Q glutamine           5.8        141           3
 R arginine            3.6         87           2
 S serine              8.1        199           3
 T threonine           4.9        119           3
 V valine              5.0        122           2
 W tryptophan          1.7         42           2
 Y tyrosine            2.7         67           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spatacsin isoform 1 
SPG11                 0.800   spatacsin isoform 2 
HMMR                  0.002   hyaluronan-mediated motility receptor isoform d [Ho...
HMMR                  0.002   hyaluronan-mediated motility receptor isoform a [Ho...
HMMR                  0.002   hyaluronan-mediated motility receptor isoform c [Ho...
HMMR                  0.002   hyaluronan-mediated motility receptor isoform b [Ho...
C10orf79              0.002   hypothetical protein LOC80217 
INO80                 0.002   INO80 complex homolog 1 
ANGPT2                0.002   angiopoietin 2 isoform b precursor 
FMNL3                 0.002   formin-like 3 isoform 2 
FMNL3                 0.002   formin-like 3 isoform 1 
ANGPT2                0.001   angiopoietin 2 isoform a precursor 
CCDC18                0.001   sarcoma antigen NY-SAR-41 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press