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Search of human proteins with 31542731
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31542731 major facilitator superfamily domain containing 7
[Homo sapiens]
(559 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31542731 major facilitator superfamily domain containing 7 [H... 1115 0.0
gi|7661708 feline leukemia virus subgroup C cellular receptor 1 ... 156 4e-38
gi|190341091 feline leukemia virus subgroup C cellular receptor ... 146 6e-35
gi|14249552 disrupted in renal carcinoma 2 [Homo sapiens] 125 8e-29
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 42 0.002
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 40 0.004
gi|194328809 latent transforming growth factor beta binding prot... 39 0.013
gi|18497288 latent transforming growth factor beta binding prote... 39 0.013
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.016
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.028
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.028
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 38 0.028
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 38 0.028
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 37 0.037
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 37 0.037
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 37 0.037
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 37 0.062
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 36 0.082
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ... 36 0.082
gi|89276766 trophinin isoform 5 [Homo sapiens] 36 0.082
gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens] 36 0.082
gi|32479527 potassium voltage-gated channel, KQT-like subfamily,... 36 0.11
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 36 0.11
gi|50083281 KIAA1853 protein [Homo sapiens] 36 0.11
gi|24497460 Shaw-related voltage-gated potassium channel protein... 35 0.14
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 35 0.14
gi|239754132 PREDICTED: hypothetical protein [Homo sapiens] 35 0.18
gi|239748617 PREDICTED: hypothetical protein XP_002346744 [Homo ... 35 0.18
gi|239742644 PREDICTED: hypothetical protein XP_002342602 [Homo ... 35 0.18
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 34 0.31
>gi|31542731 major facilitator superfamily domain containing 7 [Homo
sapiens]
Length = 559
Score = 1115 bits (2885), Expect = 0.0
Identities = 559/559 (100%), Positives = 559/559 (100%)
Query: 1 MAGPTEAETGLAEPRALCAQRGHRTYARRWVFLLAISLLNCSNATLWLSFAPVADVIAED 60
MAGPTEAETGLAEPRALCAQRGHRTYARRWVFLLAISLLNCSNATLWLSFAPVADVIAED
Sbjct: 1 MAGPTEAETGLAEPRALCAQRGHRTYARRWVFLLAISLLNCSNATLWLSFAPVADVIAED 60
Query: 61 LVLSMEQINWLSLVYLVVSTPFGVAAIWILDSVGLRAATILGAWLNFAGSVLRMVPCMVV 120
LVLSMEQINWLSLVYLVVSTPFGVAAIWILDSVGLRAATILGAWLNFAGSVLRMVPCMVV
Sbjct: 61 LVLSMEQINWLSLVYLVVSTPFGVAAIWILDSVGLRAATILGAWLNFAGSVLRMVPCMVV 120
Query: 121 GTQNPFAFLMGGQSLCALAQSLVIFSPAKLAALWFPEHQRATANMLATMSNPLGVLVANV 180
GTQNPFAFLMGGQSLCALAQSLVIFSPAKLAALWFPEHQRATANMLATMSNPLGVLVANV
Sbjct: 121 GTQNPFAFLMGGQSLCALAQSLVIFSPAKLAALWFPEHQRATANMLATMSNPLGVLVANV 180
Query: 181 LSPVLVKKGEDIPLMLGVYTIPAGVVCLLSTICLWESVPPTPPSAGAASSTSEKFLDGLK 240
LSPVLVKKGEDIPLMLGVYTIPAGVVCLLSTICLWESVPPTPPSAGAASSTSEKFLDGLK
Sbjct: 181 LSPVLVKKGEDIPLMLGVYTIPAGVVCLLSTICLWESVPPTPPSAGAASSTSEKFLDGLK 240
Query: 241 LLMWNKAYVILAVCLGGMIGISASFSALLEQILCASGHSSGFSGLCGALFITFGILGALA 300
LLMWNKAYVILAVCLGGMIGISASFSALLEQILCASGHSSGFSGLCGALFITFGILGALA
Sbjct: 241 LLMWNKAYVILAVCLGGMIGISASFSALLEQILCASGHSSGFSGLCGALFITFGILGALA 300
Query: 301 LGPYVDRTKHFTEATKIGLCLFSLACVPFALVSQLQGQTLALAATCSLLGLFGFSVGPVA 360
LGPYVDRTKHFTEATKIGLCLFSLACVPFALVSQLQGQTLALAATCSLLGLFGFSVGPVA
Sbjct: 301 LGPYVDRTKHFTEATKIGLCLFSLACVPFALVSQLQGQTLALAATCSLLGLFGFSVGPVA 360
Query: 361 MELAVECSFPVGEGAATGMIFVLGQAEGILIMLAMTALTVRRSEPSLSTCQQGEDPLDWT 420
MELAVECSFPVGEGAATGMIFVLGQAEGILIMLAMTALTVRRSEPSLSTCQQGEDPLDWT
Sbjct: 361 MELAVECSFPVGEGAATGMIFVLGQAEGILIMLAMTALTVRRSEPSLSTCQQGEDPLDWT 420
Query: 421 VSLLLMAGLCTFFSCILAVFFHTPYRRLQAESGEPPSTRNAVGGADSGPGVDRGGAGRAG 480
VSLLLMAGLCTFFSCILAVFFHTPYRRLQAESGEPPSTRNAVGGADSGPGVDRGGAGRAG
Sbjct: 421 VSLLLMAGLCTFFSCILAVFFHTPYRRLQAESGEPPSTRNAVGGADSGPGVDRGGAGRAG 480
Query: 481 VLGPSTATPECTARGASLEDPRGPGSPHPACHRATPRAQGPAATDAPSRPGRLAGRVQAS 540
VLGPSTATPECTARGASLEDPRGPGSPHPACHRATPRAQGPAATDAPSRPGRLAGRVQAS
Sbjct: 481 VLGPSTATPECTARGASLEDPRGPGSPHPACHRATPRAQGPAATDAPSRPGRLAGRVQAS 540
Query: 541 RFIDPAGSHSSFSSPWVIT 559
RFIDPAGSHSSFSSPWVIT
Sbjct: 541 RFIDPAGSHSSFSSPWVIT 559
>gi|7661708 feline leukemia virus subgroup C cellular receptor 1
[Homo sapiens]
Length = 555
Score = 156 bits (395), Expect = 4e-38
Identities = 115/385 (29%), Positives = 189/385 (49%), Gaps = 18/385 (4%)
Query: 28 RRWVFLLAISLLNCSNATLWLSFAPVADVIAEDLVLSMEQINWLSLVYLVVSTPFGVAAI 87
RR+V LL SL + NA W+ ++ +++V +++ I+WLS+VY++ P A
Sbjct: 106 RRFVVLLIFSLYSLVNAFQWIQYSIISNVFEGFYGVTLLHIDWLSMVYMLAYVPLIFPAT 165
Query: 88 WILDSVGLRAATILGAWLNFAGSVLRMVPCMVVGTQNPFAFLMGGQSLCALAQSLVIFSP 147
W+LD+ GLR +LG+ LN G+ + C V Q+ F M GQ LC++AQ ++ P
Sbjct: 166 WLLDTRGLRLTALLGSGLNCLGA---WIKCGSV-QQHLFWVTMLGQCLCSVAQVFILGLP 221
Query: 148 AKLAALWFPEHQRATANMLATMSNPLGVLVANVLSPVLVKKGE--------DIPLMLGVY 199
+++A++WF + +TA A + N LG V +L PVLV + +I M
Sbjct: 222 SRIASVWFGPKEVSTACATAVLGNQLGTAVGFLLPPVLVPNTQNDTNLLACNISTMFYGT 281
Query: 200 TIPAGVVCLLSTICLWES--VPPTPPSAGAASSTSEK--FLDGLKLLMWNKAYVILAVCL 255
+ A ++ +L+ I E PP+ A S E+ + ++ L N +V+L +
Sbjct: 282 SAVATLLFILTAIAFKEKPRYPPSQAQAALQDSPPEEYSYKKSIRNLFKNIPFVLLLITY 341
Query: 256 GGMIGISASFSALLEQILCASGHSSGF-SGLCGALFITFGILGALALGPYVDRTKHFTEA 314
G M G S S LL Q++ +G G + G++G++ G ++D TK + +
Sbjct: 342 GIMTGAFYSVSTLLNQMILTYYEGEEVNAGRIGLTLVVAGMVGSILCGLWLDYTKTYKQT 401
Query: 315 TKIGLCLFSLACVPFALVSQLQGQTLALAATCSLLGLFGFSVGPVAMELAVECSFPVGEG 374
T I L + V F L+ + + T +LG F P+ E AVE ++P EG
Sbjct: 402 TLIVYILSFIGMVIFTFTLDLR-YIIIVFVTGGVLGFFMTGYLPLGFEFAVEITYPESEG 460
Query: 375 AATGMIFVLGQAEGILIMLAMTALT 399
++G++ Q GIL LA LT
Sbjct: 461 TSSGLLNASAQIFGILFTLAQGKLT 485
>gi|190341091 feline leukemia virus subgroup C cellular receptor
family, member 2 [Homo sapiens]
Length = 526
Score = 146 bits (368), Expect = 6e-35
Identities = 103/386 (26%), Positives = 185/386 (47%), Gaps = 31/386 (8%)
Query: 28 RRWVFLLAISLLNCSNATLWLSFAPVADVIAEDLVLSMEQINWLSLVYLVVSTPFGVAAI 87
RRW +L S + N+ W+ + + ++ +S I+WLS+ Y++ P +
Sbjct: 83 RRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVA 142
Query: 88 WILDSVGLRAATILGAWLNFAGSVLRMVPCMVVGTQNP--FAFLMGGQSLCALAQSLVIF 145
W+L+ GLR + G+ LN G+ +++ G+ P F + GQ +C++AQ ++
Sbjct: 143 WLLEKFGLRTIALTGSALNCLGAWVKL------GSLKPHLFPVTVVGQLICSVAQVFILG 196
Query: 146 SPAKLAALWFPEHQRATANMLATMSNPLGVLVANVLSPVLVKKGED-------IPLMLGV 198
P+++A++WF ++ +TA +A N LG+ + ++ PVLV ED I +M
Sbjct: 197 MPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIM--- 253
Query: 199 YTIPAGVVCLL--STICLWESVPPTPPSAG-----AASSTSEKFLDGLKLLMWNKAYVIL 251
+ I GV LL I +++ P PPS A +S +L + L N +V+L
Sbjct: 254 FYIIGGVATLLLILVIIVFKEKPKYPPSRAQSLSYALTSPDASYLGSIARLFKNLNFVLL 313
Query: 252 AVCLGGMIGISASFSALLEQILCASGHSSG---FSGLCGALFITFGILGALALGPYVDRT 308
+ G G + S LL +++ H G +G G + G+LGA+ G ++DR+
Sbjct: 314 VITYGLNAGAFYALSTLLNRMVI--WHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRS 371
Query: 309 KHFTEATKIGLCLFSLACVPFALVSQLQGQTLALAATCSLLGLFGFSVGPVAMELAVECS 368
K + E T + + + V + L G + T +G F P+ E AVE +
Sbjct: 372 KTYKETTLVVYIMTLVGMVVYTFTLNL-GHLWVVFITAGTMGFFMTGYLPLGFEFAVELT 430
Query: 369 FPVGEGAATGMIFVLGQAEGILIMLA 394
+P EG ++G++ + Q GI+ ++
Sbjct: 431 YPESEGISSGLLNISAQVFGIIFTIS 456
>gi|14249552 disrupted in renal carcinoma 2 [Homo sapiens]
Length = 478
Score = 125 bits (315), Expect = 8e-29
Identities = 116/397 (29%), Positives = 185/397 (46%), Gaps = 39/397 (9%)
Query: 24 RTYARRWVFLLAISLLNCSNATLWLSFAPVADVIAEDLVLSMEQINWLSLVYLVVSTPFG 83
R Y RRW+ LL SLL +W ++ P+ + + S +W + LV+ P G
Sbjct: 46 RVYGRRWLVLLLFSLLAFVQGLVWNTWGPIQNSARQAYGFS----SW-DIALLVLWGPIG 100
Query: 84 V----AAIWILDSVGLRAATILGAWLNFAGSVLRMVPCMVVGTQNPFAFLMGGQSLCALA 139
A +W+LD GLR +L ++L G+ LR +P + + + GGQ L LA
Sbjct: 101 FLPCFAFMWLLDKRGLRITVLLTSFLMVLGTGLRCIPISDLILKR--RLIHGGQMLNGLA 158
Query: 140 QSLVIFSPAKLAALWFPEHQRATANMLATMSNPLGVLVANVLSPVLVKKGEDIPLMLGVY 199
V+ + L+ WF +RATA +A+M + LG A ++ P++V +L
Sbjct: 159 GPTVMNAAPFLSTTWFSADERATATAIASMLSYLGGACAFLVGPLVVPAPNGTSPLLAAE 218
Query: 200 TIPA--------------GVVCLL--STICLWESVPPTPPSAGAASSTSEKFLDGLKLLM 243
+ A GVVCL+ +T+ + PP PPS AAS +LL
Sbjct: 219 SSRAHIKDRIEAVLYAEFGVVCLIFSATLAYFPPRPPLPPSVAAASQRLSYRRSVCRLLS 278
Query: 244 WNKAYVILAVCLGGMIGISASFSALLEQILCASGHSSGFSGLCGALFITFGILGALALGP 303
N ++++A+ +G+ A +S +L+ IL + S +G G I G + +A+
Sbjct: 279 -NFRFLMIALAYAIPLGVFAGWSGVLDLILTPAHVSQVDAGWIGFWSIVGGCVVGIAMAR 337
Query: 304 YVDRTKHFTEATKIGLCLFS---LACVPFAL-----VSQLQGQTLALAATCSLLGLFGFS 355
+ D + + I L LFS L+ F L ++ L T+ L A+C LLG+F S
Sbjct: 338 FADFIRGMLKL--ILLLLFSGATLSSTWFTLTCLNSITHLPLTTVTLYASCILLGVFLNS 395
Query: 356 VGPVAMELAVECSFPVGEGAATGMI-FVLGQAEGILI 391
P+ EL VE +PV EG G++ F+ G+L+
Sbjct: 396 SVPIFFELFVETVYPVPEGITCGVVTFLSNMFMGVLL 432
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 41.6 bits (96), Expect = 0.002
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 465 ADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHPACHRATPRAQGPAAT 524
A GP DRGG GR G GP+ P+ + R +SL+ G H HR P GP +
Sbjct: 1249 APGGPSEDRGGKGRGGP-GPAQRVPK-SGRSSSLD-----GEHHDGYHRDEPFG-GPPGS 1300
Query: 525 DAPSRPGR 532
PSR GR
Sbjct: 1301 GTPSRGGR 1308
Score = 31.2 bits (69), Expect = 2.6
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 455 PPSTRNAVGGADSGPGVDRGGAGRAGVLGPS--TATPECTARGASLEDPRG----PGSPH 508
PP + +G GP + +GG G G +GP P+ R + P+G PG
Sbjct: 628 PPGPQGQMG--PQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHG 685
Query: 509 PACHRATPRAQGPAATDAPSRP 530
P + P QG + P
Sbjct: 686 PLGPQGPPGPQGSSGPQGHMGP 707
Score = 29.3 bits (64), Expect = 10.0
Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 455 PPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHPACHRA 514
PP R G P +GG G G+ GP + P ++ P GP +
Sbjct: 743 PPGPRGMQGPPH--PHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRENQGPAPQG 800
Query: 515 TPRAQGPAATDAPSRPGRLAG 535
P P PG L G
Sbjct: 801 MIMGHPPQEMRGPHPPGGLLG 821
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 40.4 bits (93), Expect = 0.004
Identities = 35/102 (34%), Positives = 39/102 (38%), Gaps = 24/102 (23%)
Query: 455 PPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHPACHRA 514
PP A+G A GP + GAG A A A+ P G SPHP
Sbjct: 198 PPCATGALGSALRGPSLPALGAG--------AAAGSAAAAAAAAPGPAGAASPHPP---- 245
Query: 515 TPRAQGPAATDAPSRPGRL-AGRVQASRFIDPAGSHSSFSSP 555
A G A P+ PG L AG PA HS FS P
Sbjct: 246 ---AVGGAPGPGPAGPGGLHAGA--------PAAGHSLFSLP 276
>gi|194328809 latent transforming growth factor beta binding protein
3 isoform 1 [Homo sapiens]
Length = 1303
Score = 38.9 bits (89), Expect = 0.013
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 463 GGADSGPGVDRGGAGRAGVLGP------STATPECTARGASLEDPRGPGSPHPACHRATP 516
G SGPG+ R GA G L P S A+ + DP GPG PA H
Sbjct: 150 GTGGSGPGLSRTGALSTGALPPLAPEGDSVASKHAIYAVQVIADPPGPGEGPPAQH---- 205
Query: 517 RAQGPAATDAPSRPGRLAGRVQA 539
AA P PG+++ VQA
Sbjct: 206 -----AAFLVPLGPGQISAEVQA 223
>gi|18497288 latent transforming growth factor beta binding protein
3 isoform 2 [Homo sapiens]
Length = 1256
Score = 38.9 bits (89), Expect = 0.013
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 463 GGADSGPGVDRGGAGRAGVLGP------STATPECTARGASLEDPRGPGSPHPACHRATP 516
G SGPG+ R GA G L P S A+ + DP GPG PA H
Sbjct: 150 GTGGSGPGLSRTGALSTGALPPLAPEGDSVASKHAIYAVQVIADPPGPGEGPPAQH---- 205
Query: 517 RAQGPAATDAPSRPGRLAGRVQA 539
AA P PG+++ VQA
Sbjct: 206 -----AAFLVPLGPGQISAEVQA 223
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.5 bits (88), Expect = 0.016
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 21/82 (25%)
Query: 455 PPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHPACHRA 514
PP GG GP + G AGR G +GP PG P PA +
Sbjct: 897 PPGPAGKEGG--KGPRGETGPAGRPGEVGP-------------------PGPPGPAGEKG 935
Query: 515 TPRAQGPAATDAPSRPGRLAGR 536
+P A GPA P +AG+
Sbjct: 936 SPGADGPAGAPGTPGPQGIAGQ 957
Score = 33.5 bits (75), Expect = 0.53
Identities = 35/98 (35%), Positives = 38/98 (38%), Gaps = 16/98 (16%)
Query: 455 PPSTRNAVG-----GAD--SGPGVDRGGAGRAGVLGPSTATPECTARG-ASLEDPRG--- 503
PP R G GAD +GP G G G GP + E G A L +G
Sbjct: 483 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 542
Query: 504 -PGSPHPACHRATPRAQGPAATDA-PSRPGRLAGRVQA 539
PGSP P P GPA D P PG R QA
Sbjct: 543 SPGSPGPDGKTGPP---GPAGQDGRPGPPGPPGARGQA 577
Score = 32.7 bits (73), Expect = 0.90
Identities = 32/94 (34%), Positives = 32/94 (34%), Gaps = 18/94 (19%)
Query: 455 PPSTRNAVG--GADSGPGVD--------------RGGAGRAGVLGPSTATPECTARGASL 498
P R G GAD PG D G G G GPS ARGA
Sbjct: 741 PKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAP- 799
Query: 499 EDPRGPGSPHPACHRATPRAQG-PAATDAPSRPG 531
D PG P PA P A G P A P G
Sbjct: 800 GDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAG 833
Score = 31.6 bits (70), Expect = 2.0
Identities = 29/89 (32%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 466 DSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHPACHR---ATPRAQGPA 522
D+GP G G G G + A + RG E R PG+P PA R A GP
Sbjct: 279 DAGPA---GPKGEPGSPGENGAPGQMGPRGLPGERGR-PGAPGPAGARGNDGATGAAGPP 334
Query: 523 ATDAPSRPGRLAGRVQASRFIDPAGSHSS 551
P+ P G V A P G S
Sbjct: 335 GPTGPAGPPGFPGAVGAKGEAGPQGPRGS 363
Score = 30.8 bits (68), Expect = 3.4
Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 5/108 (4%)
Query: 453 GEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGAS-LEDPRGPGSP--HP 509
GEP S GP G GR G GP+ A A GA+ P GP P P
Sbjct: 287 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP 346
Query: 510 ACHRATPRA--QGPAATDAPSRPGRLAGRVQASRFIDPAGSHSSFSSP 555
A A QGP ++ P G + PAG+ + P
Sbjct: 347 GAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP 394
Score = 29.6 bits (65), Expect = 7.6
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 451 ESGEP-PSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHP 509
++G P P+ ++ G PG RG AG G GP A E + P PG+ P
Sbjct: 552 KTGPPGPAGQDGRPGPPGPPGA-RGQAGVMGFPGPKGAAGE-PGKAGERGVPGPPGAVGP 609
Query: 510 ACHRATPRAQGPAATDAPS 528
A AQGP P+
Sbjct: 610 AGKDGEAGAQGPPGPAGPA 628
Score = 29.6 bits (65), Expect = 7.6
Identities = 31/103 (30%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 453 GEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHPACH 512
GEP +A D+GP G AG G +G A ARG S P G P A
Sbjct: 827 GEPG---DAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARG-SAGPPGATGFPGAAGR 882
Query: 513 RATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAGSHSSFSSP 555
P G A P P G PAG P
Sbjct: 883 VGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPP 925
Score = 29.6 bits (65), Expect = 7.6
Identities = 33/103 (32%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 448 LQAESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSP 507
L SGEP + + GP G G AG G S A G+ P GSP
Sbjct: 975 LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGS----PGRDGSP 1030
Query: 508 HPACHRA-TPRAQGPAATDAPSRPGRL--AGRVQASRFIDPAG 547
R T A P A AP PG + AG+ PAG
Sbjct: 1031 GAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAG 1073
Score = 29.6 bits (65), Expect = 7.6
Identities = 34/110 (30%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 455 PPSTRNAVGGADS-GPGVDRGGAGRAGVLGPSTATPECTARG-ASLEDPRG-------PG 505
PP A G GP G G G GP+ ARG A + PRG G
Sbjct: 1044 PPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQG 1103
Query: 506 SPHPACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAGSHSSFSSP 555
HR QGP P PG G AS P G S +P
Sbjct: 1104 DRGIKGHRGFSGLQGPPG--PPGSPGE-QGPSGASGPAGPRGPPGSAGAP 1150
Score = 29.6 bits (65), Expect = 7.6
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 451 ESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRG-PGSPHP 509
+SG+ T A GP RG AG G G T E RG ++ RG G P
Sbjct: 1062 KSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRG--IKGHRGFSGLQGP 1119
Query: 510 ACHRATPRAQGPAATDAPSRP 530
+P QGP+ P+ P
Sbjct: 1120 PGPPGSPGEQGPSGASGPAGP 1140
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.7 bits (86), Expect = 0.028
Identities = 33/88 (37%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 448 LQAESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSP 507
L +GEP R GAD PG D G AGV G T A GA P PGSP
Sbjct: 1027 LTGPAGEPG--REGSPGADGPPGRD----GAAGVKGDRGETGAVGAPGA----PGPPGSP 1076
Query: 508 HPACHRATPRAQGPAATDAPSRPGRLAG 535
PA +G A P P AG
Sbjct: 1077 GPAGPTGKQGDRGEAGAQGPMGPSGPAG 1104
Score = 33.9 bits (76), Expect = 0.40
Identities = 35/101 (34%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 449 QAESGEP-PSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSP 507
+ G+P P+ G GPG G G G GP+ A A+G E P PGSP
Sbjct: 344 RGNDGQPGPAGPPGPVGPAGGPGFP-GAPGAKGEAGPTGARGPEGAQGPRGE-PGTPGSP 401
Query: 508 HPACHRATPRAQG-PAATDAPSRPGRLAGRVQASRFIDPAG 547
PA P G P A + PG +AG A F P G
Sbjct: 402 GPAGASGNPGTDGIPGAKGSAGAPG-IAG---APGFPGPRG 438
Score = 33.1 bits (74), Expect = 0.69
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 455 PPSTRNAVGGADS-GPGVDRGGAGRAGVLGPSTATPECTARGAS-----LEDPRGPGSPH 508
PP G A GP G G G GPS ARG S +P G
Sbjct: 892 PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAG 951
Query: 509 PACHRATPRAQGPAATDAPSRPGRLAGR 536
P + P GP+ + P P LAG+
Sbjct: 952 PPGEKGEPGDDGPSGAEGPPGPQGLAGQ 979
Score = 32.7 bits (73), Expect = 0.90
Identities = 32/103 (31%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 451 ESGE--PPSTRNAVGGADSGPGV--DRGGAGRAGVLGPSTATPECTARGASLE--DPRGP 504
E GE PP + G A PG + G G AG GP A + A+G E
Sbjct: 802 EKGEVGPPGPAGSAG-ARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Query: 505 GSPHPACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAG 547
G+P P P QGP P G A+ F AG
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG 903
Score = 32.3 bits (72), Expect = 1.2
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 449 QAESGEPPSTRNAVGG--ADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGS 506
+ ++GEP + G + GP + G AG G GP+ + ARG +P G G
Sbjct: 452 KGQTGEP-----GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARG----EPGGVGP 502
Query: 507 PHPACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAGSHSSFSSP 555
P R P +G D + P G S P G++ P
Sbjct: 503 IGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP 551
Score = 30.8 bits (68), Expect = 3.4
Identities = 28/109 (25%), Positives = 33/109 (30%), Gaps = 17/109 (15%)
Query: 449 QAESGEPPSTRNAVG----------GADSGPGVDRGGAGRAGVLGPSTATPECTARGASL 498
+ + GEP ++ VG + GP DRG G G GP R
Sbjct: 103 KGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGP-------RGRDGEP 155
Query: 499 EDPRGPGSPHPACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAG 547
P PG P P P G A AG Q P G
Sbjct: 156 GTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMG 204
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.7 bits (86), Expect = 0.028
Identities = 33/88 (37%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 448 LQAESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSP 507
L +GEP R GAD PG D G AGV G T A GA P PGSP
Sbjct: 958 LTGPAGEPG--REGSPGADGPPGRD----GAAGVKGDRGETGAVGAPGA----PGPPGSP 1007
Query: 508 HPACHRATPRAQGPAATDAPSRPGRLAG 535
PA +G A P P AG
Sbjct: 1008 GPAGPTGKQGDRGEAGAQGPMGPSGPAG 1035
Score = 33.9 bits (76), Expect = 0.40
Identities = 35/101 (34%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 449 QAESGEP-PSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSP 507
+ G+P P+ G GPG G G G GP+ A A+G E P PGSP
Sbjct: 275 RGNDGQPGPAGPPGPVGPAGGPGFP-GAPGAKGEAGPTGARGPEGAQGPRGE-PGTPGSP 332
Query: 508 HPACHRATPRAQG-PAATDAPSRPGRLAGRVQASRFIDPAG 547
PA P G P A + PG +AG A F P G
Sbjct: 333 GPAGASGNPGTDGIPGAKGSAGAPG-IAG---APGFPGPRG 369
Score = 33.1 bits (74), Expect = 0.69
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 455 PPSTRNAVGGADS-GPGVDRGGAGRAGVLGPSTATPECTARGAS-----LEDPRGPGSPH 508
PP G A GP G G G GPS ARG S +P G
Sbjct: 823 PPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAG 882
Query: 509 PACHRATPRAQGPAATDAPSRPGRLAGR 536
P + P GP+ + P P LAG+
Sbjct: 883 PPGEKGEPGDDGPSGAEGPPGPQGLAGQ 910
Score = 32.7 bits (73), Expect = 0.90
Identities = 32/103 (31%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 451 ESGE--PPSTRNAVGGADSGPGV--DRGGAGRAGVLGPSTATPECTARGASLE--DPRGP 504
E GE PP + G A PG + G G AG GP A + A+G E
Sbjct: 733 EKGEVGPPGPAGSAG-ARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 791
Query: 505 GSPHPACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAG 547
G+P P P QGP P G A+ F AG
Sbjct: 792 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG 834
Score = 32.3 bits (72), Expect = 1.2
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 449 QAESGEPPSTRNAVGG--ADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGS 506
+ ++GEP + G + GP + G AG G GP+ + ARG +P G G
Sbjct: 383 KGQTGEP-----GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARG----EPGGVGP 433
Query: 507 PHPACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAGSHSSFSSP 555
P R P +G D + P G S P G++ P
Sbjct: 434 IGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP 482
Score = 30.8 bits (68), Expect = 3.4
Identities = 28/109 (25%), Positives = 33/109 (30%), Gaps = 17/109 (15%)
Query: 449 QAESGEPPSTRNAVG----------GADSGPGVDRGGAGRAGVLGPSTATPECTARGASL 498
+ + GEP ++ VG + GP DRG G G GP R
Sbjct: 34 KGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGP-------RGRDGEP 86
Query: 499 EDPRGPGSPHPACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAG 547
P PG P P P G A AG Q P G
Sbjct: 87 GTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMG 135
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 37.7 bits (86), Expect = 0.028
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 454 EPPSTRNAVGGADSGPGVDRGGAGR-------AGVLGPSTATPECTAR--GASLEDPRGP 504
+PP+ R+ G G G D GG G G + C R G L+ GP
Sbjct: 28 QPPAARSPRGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFGRGEGGDLQVSSGP 87
Query: 505 GSPHPACHRATPR-AQGPAATDAPSRPG 531
G+ PA RA+ R AQG + D P+ PG
Sbjct: 88 GAAPPAEFRASARSAQG--SRDVPAGPG 113
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 37.7 bits (86), Expect = 0.028
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 454 EPPSTRNAVGGADSGPGVDRGGAGR-------AGVLGPSTATPECTAR--GASLEDPRGP 504
+PP+ R+ G G G D GG G G + C R G L+ GP
Sbjct: 28 QPPAARSPRGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFGRGEGGDLQVSSGP 87
Query: 505 GSPHPACHRATPR-AQGPAATDAPSRPG 531
G+ PA RA+ R AQG + D P+ PG
Sbjct: 88 GAAPPAEFRASARSAQG--SRDVPAGPG 113
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 37.4 bits (85), Expect = 0.037
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 467 SGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPH-PACHRATPRAQGPAATD 525
SGP +RG G G GP AT + A+G S G PH P R P QGP
Sbjct: 748 SGPRGERGPTGPRGQRGPRGATGKSGAKGTS-----GGDGPHGPPGERGLPGPQGPNGFP 802
Query: 526 APSRP 530
P P
Sbjct: 803 GPKGP 807
Score = 30.0 bits (66), Expect = 5.8
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 464 GADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRG-PGSPHPACHRATPRAQGPA 522
G PG +RG AG G +GP GA+ E +G PG P QGP
Sbjct: 926 GPAGSPG-ERGAAGSGGPIGPPGRPGPQGPPGAAGE--KGVPGEKGPIGPTGRDGVQGPV 982
Query: 523 ATDAPSRPGRLAG 535
P+ P +AG
Sbjct: 983 GLPGPAGPPGVAG 995
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 37.4 bits (85), Expect = 0.037
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 467 SGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPH-PACHRATPRAQGPAATD 525
SGP +RG G G GP AT + A+G S G PH P R P QGP
Sbjct: 727 SGPRGERGPTGPRGQRGPRGATGKSGAKGTS-----GGDGPHGPPGERGLPGPQGPNGFP 781
Query: 526 APSRP 530
P P
Sbjct: 782 GPKGP 786
Score = 30.0 bits (66), Expect = 5.8
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 464 GADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRG-PGSPHPACHRATPRAQGPA 522
G PG +RG AG G +GP GA+ E +G PG P QGP
Sbjct: 905 GPAGSPG-ERGAAGSGGPIGPPGRPGPQGPPGAAGE--KGVPGEKGPIGPTGRDGVQGPV 961
Query: 523 ATDAPSRPGRLAG 535
P+ P +AG
Sbjct: 962 GLPGPAGPPGVAG 974
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 37.4 bits (85), Expect = 0.037
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 467 SGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPH-PACHRATPRAQGPAATD 525
SGP +RG G G GP AT + A+G S G PH P R P QGP
Sbjct: 834 SGPRGERGPTGPRGQRGPRGATGKSGAKGTS-----GGDGPHGPPGERGLPGPQGPNGFP 888
Query: 526 APSRP 530
P P
Sbjct: 889 GPKGP 893
Score = 30.0 bits (66), Expect = 5.8
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 464 GADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRG-PGSPHPACHRATPRAQGPA 522
G PG +RG AG G +GP GA+ E +G PG P QGP
Sbjct: 1012 GPAGSPG-ERGAAGSGGPIGPPGRPGPQGPPGAAGE--KGVPGEKGPIGPTGRDGVQGPV 1068
Query: 523 ATDAPSRPGRLAG 535
P+ P +AG
Sbjct: 1069 GLPGPAGPPGVAG 1081
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 36.6 bits (83), Expect = 0.062
Identities = 38/101 (37%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 447 RLQAESGEPPSTRNAVGGADSGPGVDRG--GAGRAGVLGPSTATPECTARGASLEDP--- 501
R Q E G+ + V GA G G G G+GRA +T P+ T AS + P
Sbjct: 249 RHQHERGQ----QQLVEGAPDGVGHLHGSRGSGRAA----TTTRPQTTPAAASPDLPQPA 300
Query: 502 -RGPGSPHPACHRATPR----AQGPAATDAPSRPGR-LAGR 536
R G P PA RA PR A+ P AP P R L GR
Sbjct: 301 ERSRGEPRPAEPRAPPRPPPAARRPPPPPAPGAPARPLRGR 341
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 36.2 bits (82), Expect = 0.082
Identities = 30/102 (29%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 451 ESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLE-----DPRGPG 505
+SG+ + A GP RG G G G T E A G +P PG
Sbjct: 1060 KSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPG 1119
Query: 506 SPHPACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAG 547
SP PA + + GPA P P G+ S P G
Sbjct: 1120 SPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIG 1161
Score = 32.0 bits (71), Expect = 1.5
Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 455 PPSTRNAVG-GADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHPACHR 513
PP A G +GP GG G AG GP A +G E G GSP P +
Sbjct: 685 PPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGE-RGGLGSPGPKGDK 743
Query: 514 ATPRAQGPAATDAPSRPG 531
P GP A P + G
Sbjct: 744 GEP--GGPGADGVPGKDG 759
Score = 30.0 bits (66), Expect = 5.8
Identities = 28/104 (26%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 451 ESGEP----PSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGAS--LEDPRGP 504
E G P P+ N + G + GP +RG G AG G + G P P
Sbjct: 484 ERGAPGFRGPAGPNGIPG-EKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSP 542
Query: 505 GSPHPACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAGS 548
G P P +QG + P P G+ F P G+
Sbjct: 543 GGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGN 586
>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
sapiens]
Length = 909
Score = 36.2 bits (82), Expect = 0.082
Identities = 35/93 (37%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 456 PSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHPACH-RA 514
P AVG A G G G GV GP T+ P A+GA P P A +A
Sbjct: 696 PEVPGAVGAALRGGG--EVGIQEGGVRGPPTSRP-ARAQGAQESPLPAPSEPPEAVEGKA 752
Query: 515 TPRAQGPAATDAPSRP-GRLAGRVQASRFIDPA 546
+PR QG AP++P LAG QA PA
Sbjct: 753 SPREQGEEG--APTQPCCGLAGGPQAGPTQQPA 783
>gi|89276766 trophinin isoform 5 [Homo sapiens]
Length = 1431
Score = 36.2 bits (82), Expect = 0.082
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 209 LSTICLWESVPPTPPSAGAASSTSEKFLDGLKLLMWNKAYVILAVCLGGMIGISASFSAL 268
LST + V T S G+A +TS F L + +VC GG S SF
Sbjct: 853 LSTTAGFSGVLSTSTSFGSAPTTSTVFSSALSTSTGFGGILSTSVCFGGSPSSSGSFGGT 912
Query: 269 LEQILCASGH---SSGFSG 284
L +C G S+GF G
Sbjct: 913 LSTSICFGGSPCTSTGFGG 931
>gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens]
Length = 949
Score = 36.2 bits (82), Expect = 0.082
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 20/83 (24%)
Query: 474 GGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHPACHRATPRAQGPAATDAPSRPGRL 533
GG G G GP A P C PACH+ TPR + P ++ + S L
Sbjct: 31 GGHGGKGAPGPGGALPTC-----------------PACHKITPRTEAPVSSVSNSLENAL 73
Query: 534 ---AGRVQASRFIDPAGSHSSFS 553
A + S P G HS S
Sbjct: 74 HTSAHSTEESLPKRPLGKHSKVS 96
>gi|32479527 potassium voltage-gated channel, KQT-like subfamily,
member 1 isoform 1 [Homo sapiens]
Length = 676
Score = 35.8 bits (81), Expect = 0.11
Identities = 29/83 (34%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 450 AESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHP 509
A + PP G PG RG AG A S E G +L P PG+P P
Sbjct: 2 AAASSPPRAERKRWGWGRLPGARRGSAGLAKKCPFSLELAEGGPAGGALYAPIAPGAPGP 61
Query: 510 A--CHRATPRAQGPAATDAPSRP 530
A A P A P A+D RP
Sbjct: 62 APPASPAAPAAP-PVASDLGPRP 83
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 35.8 bits (81), Expect = 0.11
Identities = 32/91 (35%), Positives = 37/91 (40%), Gaps = 26/91 (28%)
Query: 448 LQAESGEP-PSTRNAVG-----GADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDP 501
LQ E G P P +AVG G PG +RG G G +GP A L P
Sbjct: 90 LQGEPGLPGPPGPSAVGKPGVPGLPGKPG-ERGPYGPKGDVGP-----------AGLPGP 137
Query: 502 RGPGSPHPACHRATPRAQGPAATDAPSRPGR 532
RGP P P GPA P +PG+
Sbjct: 138 RGPPGP--------PGIPGPAGISVPGKPGQ 160
Score = 32.7 bits (73), Expect = 0.90
Identities = 33/101 (32%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 456 PSTRNAVG--GADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGP-GSPHPACH 512
P TR +G G PG +G G G GP+ + L P GP G P P H
Sbjct: 448 PGTRGPIGPPGIPGFPG-SKGDPGSPGPPGPAGIATK------GLNGPTGPPGPPGPRGH 500
Query: 513 RATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAGSHSSFS 553
P GP P PG V FI AG S S
Sbjct: 501 SGEPGLPGP-----PGPPGPPGQAVMPEGFI-KAGQRPSLS 535
Score = 30.0 bits (66), Expect = 5.8
Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 21/82 (25%)
Query: 452 SGEPPSTRNAVGGADSGPGV--DRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHP 509
SG P + G PG+ DRG G G +GP PG P
Sbjct: 214 SGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGP-------------------PGPQGP 254
Query: 510 ACHRATPRAQGPAATDAPSRPG 531
R P A AP +PG
Sbjct: 255 PGERGPEGIGKPGAAGAPGQPG 276
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 35.8 bits (81), Expect = 0.11
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 449 QAESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPH 508
+A+S PPS + G S GV G +G A L TA+P T+RG S E G +
Sbjct: 235 EAQSSRPPSQPLQMLGYLSARGVITG-SGSAADLFTKTASPLTTSRGRSQEYDSGNDTSS 293
Query: 509 PACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAGSHSSFSS 554
P P Q +A G +G + SR ++ + S +S
Sbjct: 294 P------PSTQTSSARSRGQEKGSPSGGLSKSRELNSGNTSDSGNS 333
>gi|24497460 Shaw-related voltage-gated potassium channel protein 3
[Homo sapiens]
Length = 757
Score = 35.4 bits (80), Expect = 0.14
Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 455 PPSTRNAVGGA-----DSGPGVDRGGAGRAGVLG----PSTATPECTARGASLE----DP 501
PPS V GA + PG+ RGGAG G++G P+ P A+ +E DP
Sbjct: 602 PPSMGVTVAGAYPAGPHTHPGLLRGGAGGLGIMGLPPLPAPGEPCPLAQEEVIEINRADP 661
Query: 502 RGPGSPHPA--CHRATPRAQGPAATDAPSRPGRLAGRVQASR 541
R G P A H P PA + P R + SR
Sbjct: 662 RPNGDPAAAALAHEDCPAIDQPAMSPEDKSPITPGSRGRYSR 703
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 35.4 bits (80), Expect = 0.14
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 449 QAESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPG-SP 507
+A + EPP G G GGA R + G AT E R + E R PG +P
Sbjct: 43 RAAAAEPPVIELGARGGPGGGPAGGGGAAR-DLKGRDAATAEARHRVPTTELCRPPGPAP 101
Query: 508 HPACHRATPRAQG--------PAATDAPSRPGR 532
PA T G P A AP+ PGR
Sbjct: 102 APAPASVTAELPGDGRMVQLSPPALAAPAAPGR 134
>gi|239754132 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 35.0 bits (79), Expect = 0.18
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 443 TPYRRLQAESGEPPSTRNAV--GGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLED 500
TP+ R+ + G + R+ V G AD+ PG+ R G G +L P+ + R +
Sbjct: 119 TPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGG 178
Query: 501 PRGPGSPHPACHRATPRAQGP-AATDAPSRPGRLA 534
RG P + T A GP AA PS R+A
Sbjct: 179 RRGTEKNPPG--KWTGLAPGPGAAALGPSDLPRVA 211
>gi|239748617 PREDICTED: hypothetical protein XP_002346744 [Homo
sapiens]
Length = 217
Score = 35.0 bits (79), Expect = 0.18
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 443 TPYRRLQAESGEPPSTRNAV--GGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLED 500
TP+ R+ + G + R+ V G AD+ PG+ R G G +L P+ + R +
Sbjct: 119 TPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGG 178
Query: 501 PRGPGSPHPACHRATPRAQGP-AATDAPSRPGRLA 534
RG P + T A GP AA PS R+A
Sbjct: 179 RRGTEKNPPG--KWTGLAPGPGAAALGPSDLPRVA 211
>gi|239742644 PREDICTED: hypothetical protein XP_002342602 [Homo
sapiens]
Length = 217
Score = 35.0 bits (79), Expect = 0.18
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 443 TPYRRLQAESGEPPSTRNAV--GGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLED 500
TP+ R+ + G + R+ V G AD+ PG+ R G G +L P+ + R +
Sbjct: 119 TPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGG 178
Query: 501 PRGPGSPHPACHRATPRAQGP-AATDAPSRPGRLA 534
RG P + T A GP AA PS R+A
Sbjct: 179 RRGTEKNPPG--KWTGLAPGPGAAALGPSDLPRVA 211
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 34.3 bits (77), Expect = 0.31
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 451 ESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLED-PRG------ 503
E GEP N ++G G +G G G GP A A+G +D P+G
Sbjct: 1265 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVG 1324
Query: 504 -PGSPHPACHRATPRAQGPAATD 525
PG P P P GPA D
Sbjct: 1325 FPGDPGP------PGEPGPAGQD 1341
Score = 29.3 bits (64), Expect = 10.0
Identities = 28/98 (28%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 442 HTPYRRLQAESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARG--ASLE 499
H R Q G P + GP G AG G+LGP TP + A ++
Sbjct: 626 HRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGP-RGTPGAPGQPGMAGVD 684
Query: 500 DPRGP-------GSPHPACHRATPRAQGPAATDAPSRP 530
P GP G P P + P QG P P
Sbjct: 685 GPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGP 722
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,984,327
Number of Sequences: 37866
Number of extensions: 1128989
Number of successful extensions: 5721
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 5292
Number of HSP's gapped (non-prelim): 596
length of query: 559
length of database: 18,247,518
effective HSP length: 107
effective length of query: 452
effective length of database: 14,195,856
effective search space: 6416526912
effective search space used: 6416526912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.