Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290191 Sequence: fasta or formatted (217aa) NCBI GI: 239748617
Description:

PREDICTED: hypothetical protein XP_002346744

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         25           3
 C cysteine            1.4          3           1
 D aspartate           1.4          3           1
 E glutamate           2.8          6           1
 F phenylalanine       2.3          5           1
 G glycine            12.9         28           2
 H histidine           1.8          4           1
 I isoleucine          1.8          4           1
 K lysine              4.1          9           1
 L leucine            10.1         22           3
 M methionine          1.4          3           1
 N asparagine          0.9          2           1
 P proline            11.5         25           3
 Q glutamine           1.4          3           1
 R arginine           11.1         24           3
 S serine             13.4         29           2
 T threonine           3.7          8           1
 V valine              5.5         12           1
 W tryptophan          0.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346744 
LOC100292600          1.000   PREDICTED: hypothetical protein 
LOC100289641          1.000   PREDICTED: hypothetical protein XP_002342602 
LOC645321             0.051   PREDICTED: hypothetical protein 
LOC645321             0.051   PREDICTED: hypothetical protein 
CAMTA2                0.042   calmodulin binding transcription activator 2 
DUSP8                 0.039   dual specificity phosphatase 8 
LOC100132405          0.037   PREDICTED: hypothetical protein 
LOC100132405          0.037   PREDICTED: hypothetical protein 
LOC100132405          0.037   PREDICTED: hypothetical protein 
NKX6-1                0.037   NK6 transcription factor related, locus 1 
C9orf75               0.037   hypothetical protein LOC286262 isoform 2 
C9orf75               0.037   hypothetical protein LOC286262 isoform 1 
FAM189A1              0.037   hypothetical protein LOC23359 
FLJ37078              0.037   hypothetical protein LOC222183 
LOC100293327          0.034   PREDICTED: hypothetical protein 
LOC100293375          0.034   PREDICTED: hypothetical protein 
LOC100291252          0.034   PREDICTED: hypothetical protein XP_002347634 
LOC100287254          0.034   PREDICTED: hypothetical protein XP_002343484 
TAF4                  0.034   TBP-associated factor 4 
RPH3A                 0.032   rabphilin 3A homolog isoform 1 
RPH3A                 0.032   rabphilin 3A homolog isoform 2 
PEX6                  0.029   peroxisomal biogenesis factor 6 
LOC646509             0.029   PREDICTED: hypothetical protein 
HCN4                  0.029   hyperpolarization activated cyclic nucleotide-gated p...
LOC731282             0.029   PREDICTED: hypothetical protein 
LOC731282             0.029   PREDICTED: hypothetical protein 
FLJ31945              0.027   PREDICTED: hypothetical protein 
FLJ31945              0.027   PREDICTED: hypothetical protein 
COL3A1                0.024   collagen type III alpha 1 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press