Guide to the Human Genome
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Name: TAL1 Sequence: fasta or formatted (331aa) NCBI GI: 4507363
Description:

T-cell acute lymphocytic leukemia 1

Referenced in:

T cells
Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         47           4
 C cysteine            0.6          2           1
 D aspartate           4.8         16           2
 E glutamate           6.3         21           3
 F phenylalanine       2.1          7           2
 G glycine            11.8         39          10
 H histidine           1.8          6           1
 I isoleucine          1.8          6           1
 K lysine              3.9         13           2
 L leucine             8.8         29           2
 M methionine          2.1          7           1
 N asparagine          3.0         10           2
 P proline            12.1         40           2
 Q glutamine           2.4          8           2
 R arginine            7.6         25           2
 S serine              6.3         21           2
 T threonine           4.8         16           2
 V valine              3.9         13           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-cell acute lymphocytic leukemia 1 
LYL1                  0.181   lymphoblastic leukemia derived sequence 1 
TAL2                  0.128   T-cell acute lymphocytic leukemia 2 
TCF15                 0.067   basic helix-loop-helix transcription factor 15 [Homo...
ATOH8                 0.065   atonal homolog 8 
PTF1A                 0.062   pancreas specific transcription factor, 1a 
NEUROG2               0.059   neurogenin 2 
NHLH2                 0.059   nescient helix loop helix 2 
NHLH2                 0.059   nescient helix loop helix 2 
NHLH1                 0.059   nescient helix loop helix 1 
HAND2                 0.057   basic helix-loop-helix transcription factor HAND2 [H...
ATOH7                 0.056   atonal homolog 7 
TWIST2                0.056   twist homolog 2 
TWIST1                0.054   twist 
ATOH1                 0.054   atonal homolog 1 
TCF21                 0.053   transcription factor 21 
TCF21                 0.053   transcription factor 21 
SCXB                  0.051   scleraxis homolog B 
SCXA                  0.051   scleraxis homolog A 
HAND1                 0.046   basic helix-loop-helix transcription factor HAND1 [Ho...
FERD3L                0.045   nephew of atonal 3 
BHLHA15               0.045   basic helix-loop-helix family, member a15 
MSC                   0.043   musculin 
FIGLA                 0.042   factor in the germline alpha 
NEUROD2               0.042   neurogenic differentiation 2 
ASCL2                 0.042   achaete-scute complex homolog-like 2 
NEUROG1               0.040   neurogenin 1 
ASCL3                 0.040   ASCL3 
MYOG                  0.040   myogenin 
LOC100129654          0.040   PREDICTED: similar to transcription factor 23 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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