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Search of human proteins with 31377656
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31377656 eukaryotic translation initiation factor 1A domain
containing [Homo sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31377656 eukaryotic translation initiation factor 1A domain c... 333 4e-92
gi|4503499 X-linked eukaryotic translation initiation factor 1A ... 42 3e-04
gi|33356163 eukaryotic translation initiation factor 1A, Y chrom... 41 4e-04
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 35 0.023
gi|17975763 myelin transcription factor 1 [Homo sapiens] 34 0.050
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 34 0.066
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 34 0.066
gi|21361639 DIPB protein [Homo sapiens] 34 0.066
gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sap... 33 0.15
gi|4557543 extracellular matrix protein 2 precursor [Homo sapiens] 33 0.15
gi|115511012 coiled-coil domain containing 136 [Homo sapiens] 32 0.25
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s... 32 0.33
gi|30089954 H326 [Homo sapiens] 32 0.33
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 31 0.43
gi|21450838 SH3 and cysteine rich domain 3 [Homo sapiens] 31 0.56
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 30 0.73
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 30 0.73
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 30 0.73
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 30 0.73
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 30 0.95
gi|32483374 nucleolar protein 5A [Homo sapiens] 30 0.95
gi|197927454 DEK oncogene isoform 2 [Homo sapiens] 30 0.95
gi|4503249 DEK oncogene isoform 1 [Homo sapiens] 30 0.95
gi|209870052 transmembrane protein 132C [Homo sapiens] 30 0.95
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 30 0.95
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 30 0.95
gi|194239731 eukaryotic translation elongation factor 1 delta is... 30 1.2
gi|194239727 eukaryotic translation elongation factor 1 delta is... 30 1.2
gi|194239725 eukaryotic translation elongation factor 1 delta is... 30 1.2
gi|194239723 eukaryotic translation elongation factor 1 delta is... 30 1.2
>gi|31377656 eukaryotic translation initiation factor 1A domain
containing [Homo sapiens]
Length = 165
Score = 333 bits (854), Expect = 4e-92
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN
Sbjct: 1 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN 60
Query: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQT 120
IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQT
Sbjct: 61 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQT 120
Query: 121 QPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEEAA 165
QPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEEAA
Sbjct: 121 QPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEEAA 165
>gi|4503499 X-linked eukaryotic translation initiation factor 1A
[Homo sapiens]
Length = 144
Score = 41.6 bits (96), Expect = 3e-04
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 2 SQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNI 61
+++ KR+ V KE D Q+ +V++ GN E G + L + K RK +
Sbjct: 19 NESEKRELVFKE---------DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKV 69
Query: 62 WIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPE 104
WI D ++V + + + KA++ D RSL+ G PE
Sbjct: 70 WINTSDIILVG-LRDYQDNKADVILKYNADEARSLKAYGELPE 111
>gi|33356163 eukaryotic translation initiation factor 1A, Y
chromosome [Homo sapiens]
Length = 144
Score = 41.2 bits (95), Expect = 4e-04
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 2 SQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNI 61
+++ KR+ V KE D Q+ +V++ GN E G + L + K RK +
Sbjct: 19 NESEKRELVFKE---------DGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKV 69
Query: 62 WIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPE 104
WI D ++V + + + KA++ D RSL+ G PE
Sbjct: 70 WINTSDIILVG-LRDYQDNKADVILKYNADEARSLKAYGELPE 111
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 35.4 bits (80), Expect = 0.023
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 122 PELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
P P +PQ +G+E E++ D + E EEE EEEE
Sbjct: 721 PLAPVQPQANGKEEEEEEEEDEEEEEEDEEEEEEEEEEEEEE 762
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 34.3 bits (77), Expect = 0.050
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 64 KRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPE 123
++G F+ + EE +V E S LC + E E+ + + + + E
Sbjct: 211 EKGLFIQPEDAEEVVEVTTERSQDLCPQSLEDAASE----ESSKQKGILSHEEEDEEEEE 266
Query: 124 LPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEEAA 165
E + EE E++ + + E EEE EEEEAA
Sbjct: 267 EEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAA 308
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 33.9 bits (76), Expect = 0.066
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 108 EVAEKHNNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
E E+ + + PE+ + + S S+ DSD + R + +SE+E EEE+
Sbjct: 973 EAEERDSTEQEEAGPEILSNEHVGARASPSQGDSDERESLTREEDEDSEKEEEEED 1028
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 33.9 bits (76), Expect = 0.066
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 108 EVAEKHNNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
E E+ + + PE+ + + S S+ DSD + R + +SE+E EEE+
Sbjct: 989 EAEERDSTEQEEAGPEILSNEHVGARASPSQGDSDERESLTREEDEDSEKEEEEED 1044
>gi|21361639 DIPB protein [Homo sapiens]
Length = 344
Score = 33.9 bits (76), Expect = 0.066
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 72 DPIEEGEKVKAEISFVLCKDHVRSLQK--------------EGFWPEAFSEVAEKHN--- 114
D E+V E F C+ H + ++ + + P A E A K
Sbjct: 24 DEAPGAEEVCRECGFCYCRRHAEAHRQKFLSHHLAEYVHGSQAWTPPADGEGAGKEEAEV 83
Query: 115 --NRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEE 162
+ R+ + E E + S EES SE++S+ + ESEE+SEEE
Sbjct: 84 KVEQEREIESEAGEESE-SEEESESEEESETEEESEDESDEESEEDSEEE 132
Score = 28.1 bits (61), Expect = 3.6
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 99 EGFWPEAFSEVAEKHNNRNRQTQPELPAEPQLSGEESS-----SEDDSDLFVNTNRRQYH 153
EG E E+ + E +E + EE S SED+SD + +
Sbjct: 74 EGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEEM 133
Query: 154 ESEEESEEEE 163
E E+ESE EE
Sbjct: 134 EDEQESEAEE 143
Score = 27.7 bits (60), Expect = 4.7
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 104 EAFSEVAEKHNNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEE 162
E SE E+ + E + S +ES E + D Q E+EE+++EE
Sbjct: 90 EIESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEEMEDEQESEAEEDNQEE 148
>gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo
sapiens]
Length = 2211
Score = 32.7 bits (73), Expect = 0.15
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 24/112 (21%)
Query: 54 PSKYRKNIWIKRGDFLIVD--PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAE 111
PS + +W++ VD P EE K K KD +R L K+ +
Sbjct: 889 PSWFVDTVWLRHLVVREVDLTPEEEARKKKE-------KDKLRQLLKKERLKAKLQRKKK 941
Query: 112 KHNNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
K + + + E E S EESSSE++ E EEE EEEE
Sbjct: 942 KRKGSDEEDEGE--EEESSSSEESSSEEE-------------EMEEEEEEEE 978
>gi|4557543 extracellular matrix protein 2 precursor [Homo sapiens]
Length = 699
Score = 32.7 bits (73), Expect = 0.15
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 94 RSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYH 153
R ++KE E EV E+ + R+T PE + QL E S D RR H
Sbjct: 204 RIVRKEALQSEEDEEVKEEDTEQKRET-PESRNQGQLYSEGDSRGGDRKQRPGEERRLAH 262
Query: 154 ES------EEESEEEE 163
+ EEE EEEE
Sbjct: 263 QQQRQGREEEEDEEEE 278
>gi|115511012 coiled-coil domain containing 136 [Homo sapiens]
Length = 1154
Score = 32.0 bits (71), Expect = 0.25
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 104 EAFSEVAEKHNNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
E E + Q EL AEP E S+ED + N ++ E EE+SEEEE
Sbjct: 1042 EMEEEKKQVKEEAKEQCGDELVAEPADPEEAKSTEDQEE---NEEDKEEEEKEEDSEEEE 1098
>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
sapiens]
Length = 865
Score = 31.6 bits (70), Expect = 0.33
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 64 KRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPE 123
KR LI GE +SF+ K+ +VA+ +N +TQ E
Sbjct: 335 KRDKTLIDSKHRAGEITSDGLSFLFLKE---------------VKVAKPEEMKNLETQEE 379
Query: 124 LPAE-PQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEEAA 165
+E +L E S EDD D + EE EEEEA+
Sbjct: 380 EFSELEELDEEASGMEDDEDTSGLEEEEEEPSGLEEEEEEEAS 422
>gi|30089954 H326 [Homo sapiens]
Length = 597
Score = 31.6 bits (70), Expect = 0.33
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 117 NRQTQPELPAEPQLSGEESSS---EDDSDLFVNTNRRQYHESEEESEEEE 163
NR + + + SGE+ S ED +N R + SEEE EEEE
Sbjct: 58 NRTSTESRGTDTESSGEDKDSDSMEDTGHYSINDENRVHDRSEEEEEEEE 107
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 31.2 bits (69), Expect = 0.43
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 70 IVDPIEEGEKVKAEISFVLCKDHVRSLQ-KEGFWPEAFSEVAEKHNNRNRQTQPELPAEP 128
++D +EG+K E+ + + S+ +E PE+ EV + + + +P+LP E
Sbjct: 2112 VIDDADEGKKPSPEVKIPTQRKPISSIHAREPQSPES-PEVTQNPPTQPKVAKPDLPEEK 2170
Query: 129 QLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
G S S LF ++ +E+E E +
Sbjct: 2171 GKKGISSFKSWMSSLFFGSSTPDNKVAEQEDLETQ 2205
>gi|21450838 SH3 and cysteine rich domain 3 [Homo sapiens]
Length = 364
Score = 30.8 bits (68), Expect = 0.56
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 123 ELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
ELP EPQ +GE + ++ Y E EEE EEEE
Sbjct: 41 ELPPEPQANGEAVGAGGGPIYYI------YEEEEEEEEEEE 75
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 30.4 bits (67), Expect = 0.73
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 70 IVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVA-EKHNNRNRQTQP--ELPA 126
IV+ +E E KA K H L E FS A +K ++ ++P + PA
Sbjct: 626 IVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPA 685
Query: 127 EPQL--SGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
EP+ GE E+ ++ + + + E EEE EEEE
Sbjct: 686 EPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEE 724
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 30.4 bits (67), Expect = 0.73
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 70 IVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVA-EKHNNRNRQTQP--ELPA 126
IV+ +E E KA K H L E FS A +K ++ ++P + PA
Sbjct: 626 IVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPA 685
Query: 127 EPQL--SGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
EP+ GE E+ ++ + + + E EEE EEEE
Sbjct: 686 EPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEE 724
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 30.4 bits (67), Expect = 0.73
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 70 IVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVA-EKHNNRNRQTQP--ELPA 126
IV+ +E E KA K H L E FS A +K ++ ++P + PA
Sbjct: 626 IVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPA 685
Query: 127 EPQL--SGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
EP+ GE E+ ++ + + + E EEE EEEE
Sbjct: 686 EPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEE 724
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 30.4 bits (67), Expect = 0.73
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 40 EVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEI-----------SFVL 88
E E A G F+ S+ + IK G L++ +EGE +E + L
Sbjct: 1751 EAEIASGPTFMGSLEAGGVAQANIKNGKHLLMSISKEGELCCSEAGQRPENIGQLEAKCL 1810
Query: 89 CKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTN 148
+ + GF V + N L ++ QL + +S L ++ N
Sbjct: 1811 ASPSLNPGNESGFVDMCSLSVCDSKRN--------LSSDQQLIDLLENKSLESKLILSQN 1862
Query: 149 RRQYHESEEESEEEEAA 165
E EEE+EEE A
Sbjct: 1863 HSDEEEEEEENEEENLA 1879
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 30.0 bits (66), Expect = 0.95
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 103 PEAFSEVAEKHNNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEE 162
P+ +E+ R+ QP++ EP+ EE ++ + R + E EEE E++
Sbjct: 556 PDPDAELQRMEQEAERRRQPQIKQEPESEEEEEEKQEKEE-----KREEPMEEEEEPEQK 610
>gi|32483374 nucleolar protein 5A [Homo sapiens]
Length = 594
Score = 30.0 bits (66), Expect = 0.95
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 30/125 (24%)
Query: 58 RKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKE---------------GFW 102
RKN+ + + + + + E+ AEI+ L K + L+KE
Sbjct: 415 RKNLDVMK------EAMVQAEEAAAEITRKLEKQEKKRLKKEKKRLAALALASSENSSST 468
Query: 103 PEAFSEVAEKHNNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEE--ESE 160
PE E++EK + +Q E+P +E+ ED S F +++ EE S+
Sbjct: 469 PEECEEMSEKPKKKKKQKPQEVP-------QENGMEDPSISFSKPKKKKSFSKEELMSSD 521
Query: 161 EEEAA 165
EE A
Sbjct: 522 LEETA 526
>gi|197927454 DEK oncogene isoform 2 [Homo sapiens]
Length = 341
Score = 30.0 bits (66), Expect = 0.95
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 120 TQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
TQP EP++ G SE++ D E +EE EEEE
Sbjct: 15 TQPASEKEPEMPGPREESEEEED-----------EDDEEEEEEE 47
>gi|4503249 DEK oncogene isoform 1 [Homo sapiens]
Length = 375
Score = 30.0 bits (66), Expect = 0.95
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
Query: 120 TQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEE 163
TQP EP++ G SE++ D E +EE EEEE
Sbjct: 15 TQPASEKEPEMPGPREESEEEED-----------EDDEEEEEEE 47
>gi|209870052 transmembrane protein 132C [Homo sapiens]
Length = 996
Score = 30.0 bits (66), Expect = 0.95
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 122 PELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEE 162
P LP + ++S E S + + TN+R ESE+E EEE
Sbjct: 412 PRLPLQIEVSDTELSQIKGWRVPIVTNKRPTRESEDEDEEE 452
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 30.0 bits (66), Expect = 0.95
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 114 NNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEEAA 165
N+++ QT E P+E L EE V+ + E EEE EEEE +
Sbjct: 520 NDKSLQTTFEYPSESSLEQEEE---------VDQQEEEEEEEEEEEEEEEGS 562
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 30.0 bits (66), Expect = 0.95
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 114 NNRNRQTQPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEEAA 165
N+++ QT E P+E L EE V+ + E EEE EEEE +
Sbjct: 520 NDKSLQTTFEYPSESSLEQEEE---------VDQQEEEEEEEEEEEEEEEGS 562
>gi|194239731 eukaryotic translation elongation factor 1 delta
isoform 2 [Homo sapiens]
Length = 281
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 93 VRSLQKEGFWPEAFSEVAEKHNNRNRQTQP-----------ELPAEPQLSGEESSSEDDS 141
V+ LQ+ EA V EK + +R T P E PA+ + E +DD
Sbjct: 98 VQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDI 157
Query: 142 DLFVNTNRRQYHESEEESEE 161
DLF + N + E+ + EE
Sbjct: 158 DLFGSDNEEEDKEAAQLREE 177
>gi|194239727 eukaryotic translation elongation factor 1 delta
isoform 2 [Homo sapiens]
Length = 281
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 93 VRSLQKEGFWPEAFSEVAEKHNNRNRQTQP-----------ELPAEPQLSGEESSSEDDS 141
V+ LQ+ EA V EK + +R T P E PA+ + E +DD
Sbjct: 98 VQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDI 157
Query: 142 DLFVNTNRRQYHESEEESEE 161
DLF + N + E+ + EE
Sbjct: 158 DLFGSDNEEEDKEAAQLREE 177
>gi|194239725 eukaryotic translation elongation factor 1 delta
isoform 3 [Homo sapiens]
Length = 646
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 93 VRSLQKEGFWPEAFSEVAEKHNNRNRQTQP-----------ELPAEPQLSGEESSSEDDS 141
V+ LQ+ EA V EK + +R T P E PA+ + E +DD
Sbjct: 463 VQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDI 522
Query: 142 DLFVNTNRRQYHESEEESEE 161
DLF + N + E+ + EE
Sbjct: 523 DLFGSDNEEEDKEAAQLREE 542
>gi|194239723 eukaryotic translation elongation factor 1 delta
isoform 1 [Homo sapiens]
Length = 647
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 93 VRSLQKEGFWPEAFSEVAEKHNNRNRQTQP-----------ELPAEPQLSGEESSSEDDS 141
V+ LQ+ EA V EK + +R T P E PA+ + E +DD
Sbjct: 464 VQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDI 523
Query: 142 DLFVNTNRRQYHESEEESEE 161
DLF + N + E+ + EE
Sbjct: 524 DLFGSDNEEEDKEAAQLREE 543
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,627,796
Number of Sequences: 37866
Number of extensions: 300478
Number of successful extensions: 2154
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1666
Number of HSP's gapped (non-prelim): 386
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.