Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RBM19 Sequence: fasta or formatted (960aa) NCBI GI: 226497734
Description:

RNA binding motif protein 19

Referenced in:

Nucleus and Nucleolus
RNA-binding Proteins

Other entries for this name:
alt mRNA [960aa] RNA binding motif protein 19
alt mRNA [960aa] RNA binding motif protein 19
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         79           3
 C cysteine            0.8          8           1
 D aspartate           4.5         43           1
 E glutamate          11.7        112          12
 F phenylalanine       5.2         50           1
 G glycine             6.1         59           2
 H histidine           2.4         23           2
 I isoleucine          2.6         25           1
 K lysine             10.3         99           4
 L leucine             7.8         75           2
 M methionine          1.5         14           1
 N asparagine          3.1         30           1
 P proline             5.2         50           2
 Q glutamine           4.4         42           1
 R arginine            4.6         44           2
 S serine              7.8         75           5
 T threonine           5.8         56           2
 V valine              5.7         55           2
 W tryptophan          0.6          6           1
 Y tyrosine            1.6         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 19 
RBM19                 1.000   RNA binding motif protein 19 
RBM19                 1.000   RNA binding motif protein 19 
RBM28                 0.036   RNA binding motif protein 28 
HNRNPD                0.031   heterogeneous nuclear ribonucleoprotein D isoform a ...
HNRNPD                0.031   heterogeneous nuclear ribonucleoprotein D isoform c ...
PABPC5                0.030   poly(A) binding protein, cytoplasmic 5 
HNRNPD                0.030   heterogeneous nuclear ribonucleoprotein D isoform b ...
HNRNPD                0.030   heterogeneous nuclear ribonucleoprotein D isoform d ...
PABPC4                0.030   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.030   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.030   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
NCL                   0.029   nucleolin 
PABPC1                0.029   poly(A) binding protein, cytoplasmic 1 
PABPC3                0.028   poly(A) binding protein, cytoplasmic 3 
PABPC4L               0.028   poly(A) binding protein, cytoplasmic 4-like 
HNRNPAB               0.028   heterogeneous nuclear ribonucleoprotein A/B isoform ...
HNRNPAB               0.028   heterogeneous nuclear ribonucleoprotein A/B isoform ...
SART3                 0.027   squamous cell carcinoma antigen recognized by T cells...
PABPC1L               0.026   poly(A)-binding protein, cytoplasmic 1-like 
HNRNPH2               0.026   heterogeneous nuclear ribonucleoprotein H2 
HNRNPH2               0.026   heterogeneous nuclear ribonucleoprotein H2 
TIAL1                 0.026   TIA-1 related protein isoform 2 
HNRNPH1               0.026   heterogeneous nuclear ribonucleoprotein H1 
HNRPDL                0.026   heterogeneous nuclear ribonucleoprotein D-like [Homo...
TIA1                  0.025   TIA1 protein isoform 2 
HNRNPF                0.025   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.025   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.025   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.025   heterogeneous nuclear ribonucleoprotein F 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press