Guide to the Human Genome
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Name: NOP56 Sequence: fasta or formatted (594aa) NCBI GI: 32483374
Description:

nucleolar protein 5A

Referenced in:

Nucleus and Nucleolus
Small RNAs in RNA Processing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         50           3
 C cysteine            1.2          7           1
 D aspartate           3.2         19           1
 E glutamate          10.1         60           2
 F phenylalanine       3.4         20           1
 G glycine             5.6         33           2
 H histidine           2.4         14           1
 I isoleucine          5.1         30           2
 K lysine             10.9         65           5
 L leucine            10.3         61           3
 M methionine          2.0         12           1
 N asparagine          3.7         22           1
 P proline             3.5         21           1
 Q glutamine           3.2         19           1
 R arginine            5.2         31           2
 S serine             10.3         61           3
 T threonine           3.4         20           1
 V valine              6.1         36           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.0         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleolar protein 5A 
NOP58                 0.285   NOP58 ribonucleoprotein homolog 
LOC402360             0.267   PREDICTED: similar to hCG1742476 
LOC402360             0.267   PREDICTED: similar to hCG1742476 
LOC402360             0.267   PREDICTED: hypothetical protein LOC402360 
LOC338756             0.169   PREDICTED: similar to Nucleolar protein 5A 
LOC338756             0.169   PREDICTED: similar to Nucleolar protein 5A 
LOC338756             0.169   PREDICTED: hypothetical protein 
PRPF31                0.086   pre-mRNA processing factor 31 homolog 
FAM133A               0.036   hypothetical protein LOC286499 
FAM133B               0.030   hypothetical protein LOC257415 isoform 2 
FAM133B               0.030   hypothetical protein LOC257415 isoform 1 
UPF3B                 0.029   UPF3 regulator of nonsense transcripts homolog B iso...
NEFH                  0.027   neurofilament, heavy polypeptide 200kDa 
UPF3B                 0.027   UPF3 regulator of nonsense transcripts homolog B iso...
MAP1B                 0.026   microtubule-associated protein 1B 
CIR1                  0.025   CBF1 interacting corepressor 
FHAD1                 0.021   forkhead-associated (FHA) phosphopeptide binding do...
SMTNL1                0.021   smoothelin-like 1 
RSL1D1                0.021   ribosomal L1 domain containing 1 
LOC100133758          0.020   PREDICTED: hypothetical protein, partial 
CYLC1                 0.020   cylicin, basic protein of sperm head cytoskeleton 1...
CALD1                 0.020   caldesmon 1 isoform 1 
PRPF40A               0.020   formin binding protein 3 
WDR87                 0.020   NYD-SP11 protein 
TWISTNB               0.020   TWIST neighbor 
THOC2                 0.020   THO complex 2 
LOC645202             0.020   PREDICTED: hypothetical protein LOC645202 
MAP1A                 0.020   microtubule-associated protein 1A 
CTR9                  0.020   SH2 domain binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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