NOP56 25872

Name: NOP56	Sequence: fasta or formatted (594aa)		NCBI GI: 32483374
Description: nucleolar protein 5A		Referenced in: Nucleus and Nucleolus Small RNAs in RNA Processing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.4 50 3 C cysteine 1.2 7 1 D aspartate 3.2 19 1 E glutamate 10.1 60 2 F phenylalanine 3.4 20 1 G glycine 5.6 33 2 H histidine 2.4 14 1 I isoleucine 5.1 30 2 K lysine 10.9 65 5 L leucine 10.3 61 3 M methionine 2.0 12 1 N asparagine 3.7 22 1 P proline 3.5 21 1 Q glutamine 3.2 19 1 R arginine 5.2 31 2 S serine 10.3 61 3 T threonine 3.4 20 1 V valine 6.1 36 2 W tryptophan 0.2 1 1 Y tyrosine 2.0 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nucleolar protein 5A NOP58 0.285 NOP58 ribonucleoprotein homolog LOC402360 0.267 PREDICTED: similar to hCG1742476 LOC402360 0.267 PREDICTED: similar to hCG1742476 LOC402360 0.267 PREDICTED: hypothetical protein LOC402360 LOC338756 0.169 PREDICTED: similar to Nucleolar protein 5A LOC338756 0.169 PREDICTED: similar to Nucleolar protein 5A LOC338756 0.169 PREDICTED: hypothetical protein PRPF31 0.086 pre-mRNA processing factor 31 homolog FAM133A 0.036 hypothetical protein LOC286499 FAM133B 0.030 hypothetical protein LOC257415 isoform 2 FAM133B 0.030 hypothetical protein LOC257415 isoform 1 UPF3B 0.029 UPF3 regulator of nonsense transcripts homolog B iso... NEFH 0.027 neurofilament, heavy polypeptide 200kDa UPF3B 0.027 UPF3 regulator of nonsense transcripts homolog B iso... MAP1B 0.026 microtubule-associated protein 1B CIR1 0.025 CBF1 interacting corepressor FHAD1 0.021 forkhead-associated (FHA) phosphopeptide binding do... SMTNL1 0.021 smoothelin-like 1 RSL1D1 0.021 ribosomal L1 domain containing 1 LOC100133758 0.020 PREDICTED: hypothetical protein, partial CYLC1 0.020 cylicin, basic protein of sperm head cytoskeleton 1... CALD1 0.020 caldesmon 1 isoform 1 PRPF40A 0.020 formin binding protein 3 WDR87 0.020 NYD-SP11 protein TWISTNB 0.020 TWIST neighbor THOC2 0.020 THO complex 2 LOC645202 0.020 PREDICTED: hypothetical protein LOC645202 MAP1A 0.020 microtubule-associated protein 1A CTR9 0.020 SH2 domain binding protein 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.