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Search of human proteins with 30795196
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30795196 LIM homeobox protein 2 [Homo sapiens]
(406 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 832 0.0
gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens] 568 e-162
gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens] 568 e-162
gi|21956641 ISL LIM homeobox 2 [Homo sapiens] 177 2e-44
gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens] 175 8e-44
gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens] 175 8e-44
gi|115387114 islet-1 [Homo sapiens] 167 1e-41
gi|30410785 LIM homeobox protein 1 [Homo sapiens] 165 8e-41
gi|11641283 LIM homeobox protein 5 [Homo sapiens] 163 3e-40
gi|50083287 LIM homeobox 8 [Homo sapiens] 159 4e-39
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a... 148 1e-35
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 132 6e-31
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens] 132 6e-31
gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens] 130 2e-30
gi|15375314 LIM homeobox protein 4 [Homo sapiens] 126 4e-29
gi|4505005 LIM domain only 1 [Homo sapiens] 121 1e-27
gi|21361802 LIM domain only 3 [Homo sapiens] 121 1e-27
gi|47778935 LIM domain only 3 [Homo sapiens] 121 1e-27
gi|5803072 LIM domain only 4 [Homo sapiens] 120 2e-27
gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens] 96 6e-20
gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens] 96 6e-20
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 96 6e-20
gi|4505001 LIM domain kinase 1 [Homo sapiens] 93 5e-19
gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens] 93 5e-19
gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens] 93 5e-19
gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens] 93 5e-19
gi|7662330 actin binding LIM protein family, member 3 [Homo sapi... 82 7e-16
gi|194272207 actin binding LIM protein family, member 2 isoform ... 81 2e-15
gi|153792514 actin binding LIM protein family, member 2 isoform ... 81 2e-15
gi|194272204 actin binding LIM protein family, member 2 isoform ... 81 2e-15
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 832 bits (2149), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKI 60
MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKI
Sbjct: 1 MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKI 60
Query: 61 SDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHL 120
SDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHL
Sbjct: 61 SDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHL 120
Query: 121 GISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAH 180
GISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAH
Sbjct: 121 GISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAH 180
Query: 181 FNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAY 240
FNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAY
Sbjct: 181 FNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAY 240
Query: 241 NAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLA 300
NAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLA
Sbjct: 241 NAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLA 300
Query: 301 QKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAALQTGTPSGPASELSNASLSP 360
QKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAALQTGTPSGPASELSNASLSP
Sbjct: 301 QKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAALQTGTPSGPASELSNASLSP 360
Query: 361 SSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF 406
SSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF
Sbjct: 361 SSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF 406
>gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens]
Length = 397
Score = 568 bits (1463), Expect = e-162
Identities = 286/407 (70%), Positives = 326/407 (80%), Gaps = 30/407 (7%)
Query: 1 MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKI 60
MLFH +SG + G+++EM+RR+K+EA A G + MP +S ++ ALCAGCGGKI
Sbjct: 20 MLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNG-RDAGMPPLSPEKPALCAGCGGKI 78
Query: 61 SDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHL 120
SDRYYLLAVDKQWH+RCLKCCECKL LESELTCF+KDGSIYCKEDYYRRFSVQRCARCHL
Sbjct: 79 SDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHL 138
Query: 121 GISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAH 180
GISASEMVMRARD VYHL+CFTC+TCNK LTTGDHFGMKDSLVYCR HFE LLQGEYP
Sbjct: 139 GISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQ 198
Query: 181 FNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAY 240
++ ++ AAKS G L LPY+NG GTVQKGRPRKRKSP G D+ Y
Sbjct: 199 LSYTEL--------AAKSGG--------LALPYFNGTGTVQKGRPRKRKSPALGVDIVNY 242
Query: 241 NAALSCNENDAEHLDRD-QPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
N+ CNEN+A+HLDRD QPYP SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL
Sbjct: 243 NS--GCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 300
Query: 300 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAALQTGTPSGPASELSNASLS 359
AQKTGLTKRVLQVWFQNARAKFRRNLLRQEN GVDK+ +L P+ P+++ + +L+
Sbjct: 301 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSL----PAPPSAD--SGALT 354
Query: 360 PSSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF 406
P T TTLTDLT+PT+ +V+TSV N++ HE SPSQTTLTNLF
Sbjct: 355 PPGTATTLTDLTNPTI----TVVTSVTSNMDSHESGSPSQTTLTNLF 397
>gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens]
Length = 388
Score = 568 bits (1463), Expect = e-162
Identities = 286/407 (70%), Positives = 326/407 (80%), Gaps = 30/407 (7%)
Query: 1 MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETTMPSISSDRAALCAGCGGKI 60
MLFH +SG + G+++EM+RR+K+EA A G + MP +S ++ ALCAGCGGKI
Sbjct: 11 MLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNG-RDAGMPPLSPEKPALCAGCGGKI 69
Query: 61 SDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHL 120
SDRYYLLAVDKQWH+RCLKCCECKL LESELTCF+KDGSIYCKEDYYRRFSVQRCARCHL
Sbjct: 70 SDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHL 129
Query: 121 GISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAH 180
GISASEMVMRARD VYHL+CFTC+TCNK LTTGDHFGMKDSLVYCR HFE LLQGEYP
Sbjct: 130 GISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQ 189
Query: 181 FNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAY 240
++ ++ AAKS G L LPY+NG GTVQKGRPRKRKSP G D+ Y
Sbjct: 190 LSYTEL--------AAKSGG--------LALPYFNGTGTVQKGRPRKRKSPALGVDIVNY 233
Query: 241 NAALSCNENDAEHLDRD-QPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 299
N+ CNEN+A+HLDRD QPYP SQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL
Sbjct: 234 NS--GCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL 291
Query: 300 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAALQTGTPSGPASELSNASLS 359
AQKTGLTKRVLQVWFQNARAKFRRNLLRQEN GVDK+ +L P+ P+++ + +L+
Sbjct: 292 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSL----PAPPSAD--SGALT 345
Query: 360 PSSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF 406
P T TTLTDLT+PT+ +V+TSV N++ HE SPSQTTLTNLF
Sbjct: 346 PPGTATTLTDLTNPTI----TVVTSVTSNMDSHESGSPSQTTLTNLF 388
>gi|21956641 ISL LIM homeobox 2 [Homo sapiens]
Length = 359
Score = 177 bits (449), Expect = 2e-44
Identities = 106/300 (35%), Positives = 153/300 (51%), Gaps = 54/300 (18%)
Query: 51 ALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRR 109
A+C GCG +I D++ L ++ D +WH CLKC EC L+ TCF +DG YCK DY R
Sbjct: 25 AMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRL 84
Query: 110 FSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
F + +CA+C +G S+S++VMRARD VYH+ CF C+ C++ L GD F +++ + CR
Sbjct: 85 FGI-KCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
Query: 170 EALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK 229
LL+ AAA + +S G GA L LP
Sbjct: 144 GLLLE---------------RAAAGSPRSPG-PLPGARGLHLP----------------- 170
Query: 230 SPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINH 289
G G A R + ++KT R+RT QL T+++ +A N
Sbjct: 171 DAGSGRQPAL----------------RPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANP 214
Query: 290 NPDAKDLKQLAQKTGLTKRVLQVWFQNARAK-FRRNLLRQENTGVDKSTDAALQ--TGTP 346
PDA +QL + TGL+ RV++VWFQN R K ++++L ++ S +LQ TGTP
Sbjct: 215 RPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTP 274
>gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]
Length = 377
Score = 175 bits (443), Expect = 8e-44
Identities = 105/318 (33%), Positives = 162/318 (50%), Gaps = 79/318 (24%)
Query: 22 AKSEAPAISSAIDRGDTETT-----MPSISSDRAA----------LCAGCGGKISDRYYL 66
A+S+A A++ A+D+ + + + PS+ S +A +C+ CG +I DRY L
Sbjct: 53 AQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLL 112
Query: 67 LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASE 126
+ WH+RCL+C C+ +L + +C+ K+ I+CK DY+ RF +CARC I AS+
Sbjct: 113 KVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGT-KCARCGRQIYASD 171
Query: 127 MVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADV 186
V RAR YHL CF C +C + L+TG+ FG+ + V CR+H++ +++
Sbjct: 172 WVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIEN----------- 220
Query: 187 AAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSC 246
AA GL GA P
Sbjct: 221 ----LKRAAENGNGLTLEGAVP-------------------------------------- 238
Query: 247 NENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLT 306
+E D+ QP P+ KR RTSF QL+ M++ FA ++NPDA+ L++LA TGL+
Sbjct: 239 SEQDS------QPKPA----KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLS 288
Query: 307 KRVLQVWFQNARAKFRRN 324
+RV+QVWFQN RA+ +++
Sbjct: 289 RRVIQVWFQNCRARHKKH 306
>gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]
Length = 392
Score = 175 bits (443), Expect = 8e-44
Identities = 105/318 (33%), Positives = 162/318 (50%), Gaps = 79/318 (24%)
Query: 22 AKSEAPAISSAIDRGDTETT-----MPSISSDRAA----------LCAGCGGKISDRYYL 66
A+S+A A++ A+D+ + + + PS+ S +A +C+ CG +I DRY L
Sbjct: 53 AQSDAEALAGALDKDEGQASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLL 112
Query: 67 LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASE 126
+ WH+RCL+C C+ +L + +C+ K+ I+CK DY+ RF +CARC I AS+
Sbjct: 113 KVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGT-KCARCGRQIYASD 171
Query: 127 MVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADV 186
V RAR YHL CF C +C + L+TG+ FG+ + V CR+H++ +++
Sbjct: 172 WVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIEN----------- 220
Query: 187 AAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSC 246
AA GL GA P
Sbjct: 221 ----LKRAAENGNGLTLEGAVP-------------------------------------- 238
Query: 247 NENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLT 306
+E D+ QP P+ KR RTSF QL+ M++ FA ++NPDA+ L++LA TGL+
Sbjct: 239 SEQDS------QPKPA----KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLS 288
Query: 307 KRVLQVWFQNARAKFRRN 324
+RV+QVWFQN RA+ +++
Sbjct: 289 RRVIQVWFQNCRARHKKH 306
>gi|115387114 islet-1 [Homo sapiens]
Length = 349
Score = 167 bits (424), Expect = 1e-41
Identities = 102/306 (33%), Positives = 151/306 (49%), Gaps = 56/306 (18%)
Query: 51 ALCAGCGGKISDRYYL-LAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRR 109
+LC GCG +I D+Y L ++ D +WH CLKC EC L+ TCF +DG YCK DY R
Sbjct: 15 SLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRL 74
Query: 110 FSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
+ + +CA+C +G S ++ VMRAR VYH+ CF C C++ L GD F +++ ++CR
Sbjct: 75 YGI-KCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 170 EALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRK 229
+ + + A LGA +PL + RP +
Sbjct: 134 DVV------------------------ERASLGA--GDPL--------SPLHPARPLQMA 159
Query: 230 SPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINH 289
+ ++A AL R + +KT R+RT QL T+++ +A N
Sbjct: 160 A----EPISARQPAL-----------RPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANP 204
Query: 290 NPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR----QENTGVDKSTDAALQTGT 345
PDA +QL + TGL+ RV++VWFQN R K ++ + Q+ DK T+ TGT
Sbjct: 205 RPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMMKQLQQQQPNDK-TNIQGMTGT 263
Query: 346 PSGPAS 351
P AS
Sbjct: 264 PMVAAS 269
>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
Length = 406
Score = 165 bits (417), Expect = 8e-41
Identities = 97/271 (35%), Positives = 143/271 (52%), Gaps = 37/271 (13%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
CAGC I DR+ L +D+ WH++C++CCECK NL + CFS++G +YCK D++R F
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFRCFGT 61
Query: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
+CA C GIS S++V RAR V+HLNCFTC CNK L+TG+ + D + +
Sbjct: 62 -KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKF-------V 113
Query: 173 LQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPG 232
+ +Y ++ ++ A S G++P P S
Sbjct: 114 CKEDYLSN----------SSVAKENSLHSATTGSDPSLSP----------------DSQD 147
Query: 233 PGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPD 292
P D A + + + ++ +A + D + K + RT+ K QL T+K+ FA P
Sbjct: 148 PSQDDAKDSESANVSDKEAGSNENDDQNLGA-KRRGPRTTIKAKQLETLKAAFAATPKPT 206
Query: 293 AKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 323
+QLAQ+TGL RV+QVWFQN R+K RR
Sbjct: 207 RHIREQLAQETGLNMRVIQVWFQNRRSKERR 237
>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
Length = 402
Score = 163 bits (412), Expect = 3e-40
Identities = 93/271 (34%), Positives = 142/271 (52%), Gaps = 38/271 (14%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
CAGC I DR+ L +D+ WH++C++CCECK NL + CFS++G +YCK D++RRF
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK--CFSREGKLYCKNDFFRRFGT 62
Query: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
+CA C GIS S++V +AR V+HLNCFTC CNK L+TG+ + D + +
Sbjct: 63 -KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKF-------V 114
Query: 173 LQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPG 232
+ +Y + + + + + ++ +S A + P
Sbjct: 115 CKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDA--------------------LQDDPK 154
Query: 233 PGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPD 292
+ + + + NEN+ ++ S K + RT+ K QL T+K+ FA P
Sbjct: 155 ETDNSTSSDKETANNENEEQN--------SGTKRRGPRTTIKAKQLETLKAAFAATPKPT 206
Query: 293 AKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 323
+QLAQ+TGL RV+QVWFQN R+K RR
Sbjct: 207 RHIREQLAQETGLNMRVIQVWFQNRRSKERR 237
>gi|50083287 LIM homeobox 8 [Homo sapiens]
Length = 356
Score = 159 bits (402), Expect = 4e-39
Identities = 104/344 (30%), Positives = 159/344 (46%), Gaps = 83/344 (24%)
Query: 52 LCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFS 111
+C CG +I D+Y L D WH+RCL C C+ +L +C+ KD I+CK DY+RR+
Sbjct: 74 VCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYG 133
Query: 112 VQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEA 171
RC+RC I +++ V RA+ VYHL CF C +C + L+TG+ F + + V CR+
Sbjct: 134 T-RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRV---- 188
Query: 172 LLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSP 231
H D G+ GA
Sbjct: 189 -----------HYDCMLDNLKREVENGNGISVEGA------------------------- 212
Query: 232 GPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNP 291
E D H P P+ KR RTSF QL+ M++ FA ++NP
Sbjct: 213 -------------LLTEQDVNH-----PKPA----KRARTSFTADQLQVMQAQFAQDNNP 250
Query: 292 DAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAALQTGTPSGPAS 351
DA+ L++LA++TGL++RV+QVWFQN RA+ ++++ S + + T + P S
Sbjct: 251 DAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHV----------SPNHSSSTPVTAVPPS 300
Query: 352 ELSNASLSPSSTPTTLTDLT-SPTLPTVTSVLTSVPGNLEGHEP 394
LS P L ++ S +P ++LT++ ++ H P
Sbjct: 301 RLS---------PPMLEEMAYSAYVPQDGTMLTALHSYMDAHSP 335
>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
[Homo sapiens]
Length = 382
Score = 148 bits (373), Expect = 1e-35
Identities = 109/359 (30%), Positives = 158/359 (44%), Gaps = 63/359 (17%)
Query: 31 SAIDRGDTETTMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESE 90
SAID + +++ + ++C GC I DR+ L D WH +C++C CK LE+
Sbjct: 13 SAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPLET- 71
Query: 91 LTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKML 150
TCF +D +YCK DY + F+V +C C I+ +E VMRA+ VYHL+CF C C + L
Sbjct: 72 -TCFYRDKKLYCKYDYEKLFAV-KCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQL 129
Query: 151 TTGDHFGMKDSLVYCRLHFE---ALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGAN 207
GD F +K+ + C+ +E LL PA A+ + + +S A GA
Sbjct: 130 QKGDEFVLKEGQLLCKGDYEKERELLSLVSPA-------ASDSGKSDDEESLCKSAHGA- 181
Query: 208 PLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTK 267
G GT ++G+ KR K
Sbjct: 182 --------GKGTAEEGKDHKR-------------------------------------PK 196
Query: 268 RMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 327
R RT Q R K+ F ++ P K + LA +TGL+ RV+QVWFQN RAK ++ R
Sbjct: 197 RPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARR 256
Query: 328 QENTGVDKSTDAALQTGTPSGPASELSNASLSPSSTPTTLTDLTSPTLPTVTSVLTSVP 386
Q+ D+ L + +G S A + P T L SV +S P
Sbjct: 257 QQQQQQDQQNTQRLSSAQTNGGGS----AGMEGIMNPYTALPTPQQLLAIEQSVYSSDP 311
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 132 bits (332), Expect = 6e-31
Identities = 64/149 (42%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Query: 52 LCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFS 111
LCAGC I DR+ L A+D+ WH +CLKC +C L CFS+ S+YCK+D+++RF
Sbjct: 30 LCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAER--CFSRGESVYCKDDFFKRFG 87
Query: 112 VQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFE 170
+CA C LGI +++V RA+D VYHL+CF C C + L TGD F M+DS + C+ +E
Sbjct: 88 T-KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 146
Query: 171 ALLQGEYPAHFNHADVAAAAAAAAAAKSA 199
Q E A A KSA
Sbjct: 147 TAKQREAEATAKRPRTTITAKQLETLKSA 175
Score = 52.4 bits (124), Expect = 7e-07
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 267 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 323
KR RT+ QL T+KS + + P +QL+ +TGL RV+QVWFQN RAK +R
Sbjct: 158 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR 214
>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 132 bits (332), Expect = 6e-31
Identities = 64/149 (42%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Query: 52 LCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFS 111
LCAGC I DR+ L A+D+ WH +CLKC +C L CFS+ S+YCK+D+++RF
Sbjct: 35 LCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAER--CFSRGESVYCKDDFFKRFG 92
Query: 112 VQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFE 170
+CA C LGI +++V RA+D VYHL+CF C C + L TGD F M+DS + C+ +E
Sbjct: 93 T-KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
Query: 171 ALLQGEYPAHFNHADVAAAAAAAAAAKSA 199
Q E A A KSA
Sbjct: 152 TAKQREAEATAKRPRTTITAKQLETLKSA 180
Score = 52.4 bits (124), Expect = 7e-07
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 267 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 323
KR RT+ QL T+KS + + P +QL+ +TGL RV+QVWFQN RAK +R
Sbjct: 163 KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR 219
>gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]
Length = 372
Score = 130 bits (328), Expect = 2e-30
Identities = 104/372 (27%), Positives = 157/372 (42%), Gaps = 81/372 (21%)
Query: 51 ALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRF 110
A+C GC ISDR+ + + WH CL+C C+ L + +C+ +D +YCK+DY + F
Sbjct: 31 AVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTT--SCYFRDRKLYCKQDYQQLF 88
Query: 111 SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
+ +C+ C I+ +E VMRA + VYHL CF C C + L GD F +K+ + C+ +E
Sbjct: 89 AA-KCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYE 147
Query: 171 A---LLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRK 227
LL P + +D + K A G G+ KG
Sbjct: 148 KEKDLLSSVSP---DESDSVKSEDEDGDMKPA---------------KGQGSQSKGSGDD 189
Query: 228 RKSPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAI 287
K P ++ KR RT Q R K+ F +
Sbjct: 190 GKDP--------------------------------RRPKRPRTILTTQQRRAFKASFEV 217
Query: 288 NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF----RRNLLRQENTG--------VDK 335
+ P K + LA +TGL+ RV+QVWFQN RAK RR+ +QE +
Sbjct: 218 SSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQEQQNSQRLGQEVLSS 277
Query: 336 STDAALQTGTP-SGPASELSNASLSP-SSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHE 393
+ + + TP + P ++ SP S+ LT P +P S+ +
Sbjct: 278 RMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGNDSIFHDI-------- 329
Query: 394 PHSPSQTTLTNL 405
S T+LT+L
Sbjct: 330 ---DSDTSLTSL 338
>gi|15375314 LIM homeobox protein 4 [Homo sapiens]
Length = 390
Score = 126 bits (316), Expect = 4e-29
Identities = 54/125 (43%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
CAGC I D++ L +D+ WH CLKC +C++ L CFS+ GS+YCKED+++RF
Sbjct: 30 CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADR--CFSRAGSVYCKEDFFKRFGT 87
Query: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFG-MKDSLVYCRLHFEA 171
+C C GI +++V +A+D VYHL+CF C CN+ L TGD F M+D + C+ +E
Sbjct: 88 -KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYET 146
Query: 172 LLQGE 176
Q +
Sbjct: 147 AKQND 151
Score = 51.2 bits (121), Expect = 2e-06
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 262 SSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 321
S KR RT+ QL T+K+ + + P +QL+ +TGL RV+QVWFQN RAK
Sbjct: 153 SEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKE 212
Query: 322 RR 323
+R
Sbjct: 213 KR 214
>gi|4505005 LIM domain only 1 [Homo sapiens]
Length = 156
Score = 121 bits (304), Expect = 1e-27
Identities = 63/140 (45%), Positives = 82/140 (58%), Gaps = 7/140 (5%)
Query: 37 DTETTMPSIS---SDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESEL 91
D E +P +S + CAGC KI DRY L A+DK WH CLKC C+C+L E
Sbjct: 5 DKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG-EVGS 63
Query: 92 TCFSKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKML 150
T ++K I C+ DY R F CA C I A EMVMRARD VYHL+CF C CN+
Sbjct: 64 TLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRF 123
Query: 151 TTGDHFGMKDSLVYCRLHFE 170
GD F +K++++ C++ +E
Sbjct: 124 CVGDKFFLKNNMILCQMDYE 143
>gi|21361802 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 121 bits (303), Expect = 1e-27
Identities = 61/127 (48%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
CAGC KI DRY L A+DK WH CLKC C+C+L E T ++K I C+ DY R F
Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLF 71
Query: 111 SVQ-RCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
V CA C I A EMVMRA+D VYHL+CF C CN+ GD F +K++++ C+ +
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDY 131
Query: 170 EALLQGE 176
E L E
Sbjct: 132 EEGLMKE 138
>gi|47778935 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 121 bits (303), Expect = 1e-27
Identities = 61/127 (48%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
CAGC KI DRY L A+DK WH CLKC C+C+L E T ++K I C+ DY R F
Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLF 71
Query: 111 SVQ-RCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHF 169
V CA C I A EMVMRA+D VYHL+CF C CN+ GD F +K++++ C+ +
Sbjct: 72 GVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDY 131
Query: 170 EALLQGE 176
E L E
Sbjct: 132 EEGLMKE 138
>gi|5803072 LIM domain only 4 [Homo sapiens]
Length = 165
Score = 120 bits (302), Expect = 2e-27
Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 2/115 (1%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNL-ESELTCFSKDGSIYCKEDYYRRFS 111
CAGCGGKI+DR+ L A+D WH RCLKC C+ L + +C++K G I C+ DY R F
Sbjct: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
Query: 112 VQ-RCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYC 165
C+ C I ASE+VMRA+ VYHL CFTC+TC L GD F + ++C
Sbjct: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 137
>gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 95.9 bits (237), Expect = 6e-20
Identities = 54/145 (37%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 29 ISSAIDRGDTETTMPSISS-----DRAALCAGCGGKISDRYYLLAVDKQWHMRCLKC--C 81
+SSAI+R + + + C GC I DRY+L A+D+ WH CL C C
Sbjct: 1 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 82 ECKLNLESELTCFSKDGSIYCKEDYYRRFSVQR-CARCHLGISASEMVMRARDLVYHLNC 140
C+L E + K G C+ DY R F CA C I A EM MR +D VYHL C
Sbjct: 61 GCRLG-EVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLEC 119
Query: 141 FTCTTCNKMLTTGDHFGMKDSLVYC 165
F C C K GD + + +S + C
Sbjct: 120 FKCAACQKHFCVGDRYLLINSDIVC 144
>gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 95.9 bits (237), Expect = 6e-20
Identities = 54/145 (37%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 29 ISSAIDRGDTETTMPSISS-----DRAALCAGCGGKISDRYYLLAVDKQWHMRCLKC--C 81
+SSAI+R + + + C GC I DRY+L A+D+ WH CL C C
Sbjct: 1 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 82 ECKLNLESELTCFSKDGSIYCKEDYYRRFSVQR-CARCHLGISASEMVMRARDLVYHLNC 140
C+L E + K G C+ DY R F CA C I A EM MR +D VYHL C
Sbjct: 61 GCRLG-EVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLEC 119
Query: 141 FTCTTCNKMLTTGDHFGMKDSLVYC 165
F C C K GD + + +S + C
Sbjct: 120 FKCAACQKHFCVGDRYLLINSDIVC 144
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 95.9 bits (237), Expect = 6e-20
Identities = 54/145 (37%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 29 ISSAIDRGDTETTMPSISS-----DRAALCAGCGGKISDRYYLLAVDKQWHMRCLKC--C 81
+SSAI+R + + + C GC I DRY+L A+D+ WH CL C C
Sbjct: 70 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 129
Query: 82 ECKLNLESELTCFSKDGSIYCKEDYYRRFSVQR-CARCHLGISASEMVMRARDLVYHLNC 140
C+L E + K G C+ DY R F CA C I A EM MR +D VYHL C
Sbjct: 130 GCRLG-EVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLEC 188
Query: 141 FTCTTCNKMLTTGDHFGMKDSLVYC 165
F C C K GD + + +S + C
Sbjct: 189 FKCAACQKHFCVGDRYLLINSDIVC 213
>gi|4505001 LIM domain kinase 1 [Homo sapiens]
Length = 647
Score = 92.8 bits (229), Expect = 5e-19
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 18/178 (10%)
Query: 52 LCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFS 111
+CA CG +I D YL A++ WH C +CC+C +L + + KDG ++CK+DY+ R+
Sbjct: 24 VCASCGQRIYDGQYLQALNADWHADCFRCCDCSASLSHQY--YEKDGQLFCKKDYWARYG 81
Query: 112 VQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGM-KDSLVYCRLHF- 169
+ C C I+ +VM A +L YH CF C TC + GD + + + S +YC +
Sbjct: 82 -ESCHGCSEQITKG-LVMVAGELKYHPECFICLTCGTFIGDGDTYTLVEHSKLYCGHCYY 139
Query: 170 --------EALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGT 219
E +L +H H V + A++ GL + P G P G GT
Sbjct: 140 QTVVTPVIEQILPDSPGSHLPHT-VTLVSIPASSHGKRGLSVSIDPPHGPP---GCGT 193
>gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens]
Length = 746
Score = 92.8 bits (229), Expect = 5e-19
Identities = 48/112 (42%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
CAGCG I + LLA+DKQWH+ C KC C L E SKDG+ YC++DY F V
Sbjct: 166 CAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEY--ISKDGAPYCEKDYQGLFGV 223
Query: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVY 164
+C CH I+ V+ A D YH +C C+ CN+M T G+ ++ S V+
Sbjct: 224 -KCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVW 272
Score = 52.4 bits (124), Expect = 7e-07
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
C CG L K +H++C C C +L ++ F K+G C DY R +
Sbjct: 39 CHKCGEPCKGEV-LRVQTKHFHIKCFTCKVCGCDL-AQGGFFIKNGEYLCTLDYQRMYGT 96
Query: 113 QRCARCH-LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRL 167
RCH G V+ A YH NCF CT C + GD C+L
Sbjct: 97 ----RCHGCGEFVEGEVVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQL 148
>gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens]
Length = 718
Score = 92.8 bits (229), Expect = 5e-19
Identities = 48/112 (42%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
CAGCG I + LLA+DKQWH+ C KC C L E SKDG+ YC++DY F V
Sbjct: 166 CAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEY--ISKDGAPYCEKDYQGLFGV 223
Query: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVY 164
+C CH I+ V+ A D YH +C C+ CN+M T G+ ++ S V+
Sbjct: 224 -KCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVW 272
Score = 52.4 bits (124), Expect = 7e-07
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
C CG L K +H++C C C +L ++ F K+G C DY R +
Sbjct: 39 CHKCGEPCKGEV-LRVQTKHFHIKCFTCKVCGCDL-AQGGFFIKNGEYLCTLDYQRMYGT 96
Query: 113 QRCARCH-LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRL 167
RCH G V+ A YH NCF CT C + GD C+L
Sbjct: 97 ----RCHGCGEFVEGEVVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQL 148
>gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens]
Length = 778
Score = 92.8 bits (229), Expect = 5e-19
Identities = 48/112 (42%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
CAGCG I + LLA+DKQWH+ C KC C L E SKDG+ YC++DY F V
Sbjct: 226 CAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEY--ISKDGAPYCEKDYQGLFGV 283
Query: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVY 164
+C CH I+ V+ A D YH +C C+ CN+M T G+ ++ S V+
Sbjct: 284 -KCEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVW 332
Score = 52.4 bits (124), Expect = 7e-07
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
C CG L K +H++C C C +L ++ F K+G C DY R +
Sbjct: 99 CHKCGEPCKGEV-LRVQTKHFHIKCFTCKVCGCDL-AQGGFFIKNGEYLCTLDYQRMYGT 156
Query: 113 QRCARCH-LGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRL 167
RCH G V+ A YH NCF CT C + GD C+L
Sbjct: 157 ----RCHGCGEFVEGEVVTALGKTYHPNCFACTICKRPFPPGDRVTFNGRDCLCQL 208
>gi|7662330 actin binding LIM protein family, member 3 [Homo
sapiens]
Length = 683
Score = 82.4 bits (202), Expect = 7e-16
Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
CAGC +I LLA+DKQWH+ C KC C + L E SKDG YC+ DY+ +F +
Sbjct: 151 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEY--ISKDGVPYCESDYHAQFGI 208
Query: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVY 164
+C C IS V+ A YH C C C++M T G+ + S V+
Sbjct: 209 -KCETCDRYISG--RVLEAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVW 257
Score = 45.8 bits (107), Expect = 7e-05
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 70 DKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVM 129
+ +H+RC C C L ++ F K+ C +DY + + RC C I+ V+
Sbjct: 39 NNHFHIRCFTCQVCGCGL-AQSGFFFKNQEYICTQDYQQLYGT-RCDSCRDFITGE--VI 94
Query: 130 RARDLVYHLNCFTCTTCNKMLTTGD 154
A YH CF C+ C K GD
Sbjct: 95 SALGRTYHPKCFVCSLCRKPFPIGD 119
Score = 31.2 bits (69), Expect = 1.8
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 111 SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
+V +C RC G + V+R + +H+ CFTC C L F K+ C ++
Sbjct: 19 NVIQCYRC--GDTCKGEVVRVHNNHFHIRCFTCQVCGCGLAQSGFF-FKNQEYICTQDYQ 75
Query: 171 AL 172
L
Sbjct: 76 QL 77
>gi|194272207 actin binding LIM protein family, member 2 isoform 7
[Homo sapiens]
Length = 470
Score = 80.9 bits (198), Expect = 2e-15
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
C GCG +I + L+A+DK WH+ C KC C L +E SKDG YC+ DY+ +F +
Sbjct: 153 CGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLLNAEY--ISKDGLPYCEADYHAKFGI 210
Query: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVY 164
RC C I+ V+ A + YH +C C C +M G+ ++ S ++
Sbjct: 211 -RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIW 259
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/136 (27%), Positives = 52/136 (38%), Gaps = 5/136 (3%)
Query: 31 SAIDRGDTETTMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESE 90
SA+ + + S A LC CG + L DK +H++C C C +L +E
Sbjct: 2 SAVSQPQAAPSPLEKSPSTAILCNTCGN-VCKGEVLRVQDKYFHIKCFVCKACGCDL-AE 59
Query: 91 LTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKML 150
F + G C DY R + RC C I V+ A YH +CF C C
Sbjct: 60 GGFFVRQGEYICTLDYQRLYGT-RCFSCDQFIEGE--VVSALGKTYHPDCFVCAVCRLPF 116
Query: 151 TTGDHFGMKDSLVYCR 166
GD C+
Sbjct: 117 PPGDRVTFNGKECMCQ 132
Score = 32.3 bits (72), Expect = 0.79
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 128 VMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
V+R +D +H+ CF C C L G F ++ C L ++ L
Sbjct: 35 VLRVQDKYFHIKCFVCKACGCDLAEGGFF-VRQGEYICTLDYQRL 78
>gi|153792514 actin binding LIM protein family, member 2 isoform 6
[Homo sapiens]
Length = 521
Score = 80.9 bits (198), Expect = 2e-15
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
C GCG +I + L+A+DK WH+ C KC C L +E SKDG YC+ DY+ +F +
Sbjct: 153 CGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLLNAEY--ISKDGLPYCEADYHAKFGI 210
Query: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVY 164
RC C I+ V+ A + YH +C C C +M G+ ++ S ++
Sbjct: 211 -RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIW 259
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/136 (27%), Positives = 52/136 (38%), Gaps = 5/136 (3%)
Query: 31 SAIDRGDTETTMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESE 90
SA+ + + S A LC CG + L DK +H++C C C +L +E
Sbjct: 2 SAVSQPQAAPSPLEKSPSTAILCNTCGN-VCKGEVLRVQDKYFHIKCFVCKACGCDL-AE 59
Query: 91 LTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKML 150
F + G C DY R + RC C I V+ A YH +CF C C
Sbjct: 60 GGFFVRQGEYICTLDYQRLYGT-RCFSCDQFIEGE--VVSALGKTYHPDCFVCAVCRLPF 116
Query: 151 TTGDHFGMKDSLVYCR 166
GD C+
Sbjct: 117 PPGDRVTFNGKECMCQ 132
Score = 32.3 bits (72), Expect = 0.79
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 128 VMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
V+R +D +H+ CF C C L G F ++ C L ++ L
Sbjct: 35 VLRVQDKYFHIKCFVCKACGCDLAEGGFF-VRQGEYICTLDYQRL 78
>gi|194272204 actin binding LIM protein family, member 2 isoform 5
[Homo sapiens]
Length = 531
Score = 80.9 bits (198), Expect = 2e-15
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
C GCG +I + L+A+DK WH+ C KC C L +E SKDG YC+ DY+ +F +
Sbjct: 153 CGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLLNAEY--ISKDGLPYCEADYHAKFGI 210
Query: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVY 164
RC C I+ V+ A + YH +C C C +M G+ ++ S ++
Sbjct: 211 -RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIW 259
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/136 (27%), Positives = 52/136 (38%), Gaps = 5/136 (3%)
Query: 31 SAIDRGDTETTMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESE 90
SA+ + + S A LC CG + L DK +H++C C C +L +E
Sbjct: 2 SAVSQPQAAPSPLEKSPSTAILCNTCGN-VCKGEVLRVQDKYFHIKCFVCKACGCDL-AE 59
Query: 91 LTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKML 150
F + G C DY R + RC C I V+ A YH +CF C C
Sbjct: 60 GGFFVRQGEYICTLDYQRLYGT-RCFSCDQFIEGE--VVSALGKTYHPDCFVCAVCRLPF 116
Query: 151 TTGDHFGMKDSLVYCR 166
GD C+
Sbjct: 117 PPGDRVTFNGKECMCQ 132
Score = 32.3 bits (72), Expect = 0.79
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 128 VMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
V+R +D +H+ CF C C L G F ++ C L ++ L
Sbjct: 35 VLRVQDKYFHIKCFVCKACGCDLAEGGFF-VRQGEYICTLDYQRL 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.130 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,390,010
Number of Sequences: 37866
Number of extensions: 795978
Number of successful extensions: 7427
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 177
Number of HSP's that attempted gapping in prelim test: 5004
Number of HSP's gapped (non-prelim): 1983
length of query: 406
length of database: 18,247,518
effective HSP length: 105
effective length of query: 301
effective length of database: 14,271,588
effective search space: 4295747988
effective search space used: 4295747988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.