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Search of human proteins with 30410785
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30410785 LIM homeobox protein 1 [Homo sapiens]
(406 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30410785 LIM homeobox protein 1 [Homo sapiens] 854 0.0
gi|11641283 LIM homeobox protein 5 [Homo sapiens] 624 e-179
gi|15375314 LIM homeobox protein 4 [Homo sapiens] 245 5e-65
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 235 6e-62
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens] 235 6e-62
gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens] 194 1e-49
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a... 192 5e-49
gi|115387114 islet-1 [Homo sapiens] 165 8e-41
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 165 8e-41
gi|21956641 ISL LIM homeobox 2 [Homo sapiens] 164 2e-40
gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens] 161 9e-40
gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens] 161 9e-40
gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens] 159 6e-39
gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens] 159 6e-39
gi|50083287 LIM homeobox 8 [Homo sapiens] 149 3e-36
gi|4505005 LIM domain only 1 [Homo sapiens] 108 1e-23
gi|5803072 LIM domain only 4 [Homo sapiens] 107 3e-23
gi|21361802 LIM domain only 3 [Homo sapiens] 105 7e-23
gi|47778935 LIM domain only 3 [Homo sapiens] 105 7e-23
gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens] 92 6e-19
gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens] 92 6e-19
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 92 6e-19
gi|4505001 LIM domain kinase 1 [Homo sapiens] 89 5e-18
gi|7662330 actin binding LIM protein family, member 3 [Homo sapi... 89 7e-18
gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens] 86 5e-17
gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens] 84 2e-16
gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens] 84 2e-16
gi|42741675 PDZ and LIM domain 7 isoform 2 [Homo sapiens] 74 3e-13
gi|11496885 PDZ and LIM domain 7 isoform 1 [Homo sapiens] 74 3e-13
gi|194272207 actin binding LIM protein family, member 2 isoform ... 72 1e-12
>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
Length = 406
Score = 854 bits (2206), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG 60
MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG 60
Query: 61 TKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLS 120
TKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLS
Sbjct: 61 TKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLS 120
Query: 121 NSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKR 180
NSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKR
Sbjct: 121 NSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKR 180
Query: 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240
RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ
Sbjct: 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240
Query: 241 LSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGP 300
LSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGP
Sbjct: 241 LSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGP 300
Query: 301 PSSQAQTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPS 360
PSSQAQTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPS
Sbjct: 301 PSSQAQTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPS 360
Query: 361 LPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW 406
LPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW
Sbjct: 361 LPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW 406
>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
Length = 402
Score = 624 bits (1609), Expect = e-179
Identities = 305/409 (74%), Positives = 348/409 (85%), Gaps = 11/409 (2%)
Query: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFG 60
MVHCAGC+RPILDRFLLNVLDRAWH+KCVQCCECK NL+EKCFSREGKLYCKNDFFR FG
Sbjct: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFG 61
Query: 61 TKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLS 120
TKCAGCAQGISPSDLVR+ARSKVFHLNCFTCM+CNKQLSTGEELY+IDENKFVCK+DYLS
Sbjct: 62 TKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLS 121
Query: 121 NSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKR 180
+SS+ KE SL+S ++ +D SLSPD QD QDD K+++++ SDKE +NEN++QN G KR
Sbjct: 122 SSSL-KEGSLNSVSSCTDRSLSPDLQDALQDDPKETDNSTSSDKETANNENEEQNSGTKR 180
Query: 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240
RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ
Sbjct: 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQ 240
Query: 241 LSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGP 300
LSALGARRHAFFRSPRRMRPL RL+ E++ + P+++YGDYQ +YY PG NYDFF GP
Sbjct: 241 LSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYGDYQGDYYAPGSNYDFFAHGP 300
Query: 301 PSSQAQTPVDLPFVPSSGPSGTPLGGLEHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPS 360
P SQAQ+P D F+ +SGP TPLG LE PL G H +++ RFTD+++HP D+PSPEP
Sbjct: 301 P-SQAQSPADSSFLAASGPGSTPLGALEPPLAGPH-AADNPRFTDMISHP--DTPSPEPG 356
Query: 361 LPGPLHSMSAEVF--GPSPPFSSLSVNGGASYGNHLSHP-PEMNEAAVW 406
LPG LH M EVF GPSPPF ++G + Y LSHP PE+NEAAVW
Sbjct: 357 LPGTLHPMPGEVFSGGPSPPF---PMSGTSGYSGPLSHPNPELNEAAVW 402
>gi|15375314 LIM homeobox protein 4 [Homo sapiens]
Length = 390
Score = 245 bits (626), Expect = 5e-65
Identities = 151/429 (35%), Positives = 216/429 (50%), Gaps = 103/429 (24%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
CAGC + ILD+F+L VLDR WH C++C +C+ L ++CFSR G +YCK DFF+ FGTKC
Sbjct: 30 CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKC 89
Query: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
C QGI P+ +VR+A+ V+HL+CF C++CN+QL+TG+E Y++++ + VCKEDY +
Sbjct: 90 TACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYET--- 146
Query: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGP 183
+ +NDD GAKR P
Sbjct: 147 --------------------------------------------AKQNDDSEAGAKR--P 160
Query: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
RTTI AKQLETLK A+ +PKP RH+REQL+ ETGL+MRV+QVWFQNRR+KE+R+K+
Sbjct: 161 RTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK--- 217
Query: 244 LGARRH---AFFRSPRRMRPLVDRLEPGEL----IPNGPFSFYGD-------YQSEYY-- 287
A RH F++S +R R + + + + SF D + + Y
Sbjct: 218 -DAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFREDQILSELGHTNRIYGN 276
Query: 288 -----------------GPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLEHP 330
G G +Y G P Q+P + +PS P L GL++
Sbjct: 277 VGDVTGGQLMNGSFSMDGTGQSYQDLRDGSPYGIPQSPSSISSLPSHAPL---LNGLDYT 333
Query: 331 LPGHHPSSEAQRFTDILAHP-PGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGAS 389
+ + I+AH G S + GP +S G S + + G S
Sbjct: 334 VDSN---------LGIIAHAGQGVSQTLRAMAGGPTSDIST---GSSVGYPDFPTSPG-S 380
Query: 390 YGNHLSHPP 398
+ + + HPP
Sbjct: 381 WLDEMDHPP 389
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 235 bits (599), Expect = 6e-62
Identities = 153/416 (36%), Positives = 206/416 (49%), Gaps = 108/416 (25%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
CAGC + ILDRF+L LDR WH KC++C +C L E+CFSR +YCK+DFF+ FGTKC
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKC 90
Query: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
A C GI P+ +VRRA+ V+HL+CF C++C +QL+TG+E Y++++++ VCK DY
Sbjct: 91 AACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY----- 145
Query: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGP 183
E+A + EA AKR P
Sbjct: 146 ---------------------------------ETAKQREAEA----------TAKR--P 160
Query: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
RTTI AKQLETLK+A+ +PKP RH+REQL+ ETGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 161 RTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK-DA 219
Query: 244 LGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSS 303
R +FR+ +R R G + D +G S
Sbjct: 220 GRQRWGQYFRNMKRSRG---------------------------GSKSDKDSVQEGQDSD 252
Query: 304 QAQTPVDLPFVPSSGPSGTPLGGLEHPLPG-HHPSSEAQRFT---DILAHP-------PG 352
+ D P + GP+ G L P PS F+ LA P PG
Sbjct: 253 AEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLEHGGLAGPEQYRELRPG 312
Query: 353 D------SPSPEPSLPGPLHSMSAEVF-------------GPSPPFSSLSVNGGAS 389
SP+ SLPGP +S+ V+ G PP L+ NG +S
Sbjct: 313 SPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPPPMRVLAGNGPSS 368
>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 235 bits (599), Expect = 6e-62
Identities = 153/416 (36%), Positives = 206/416 (49%), Gaps = 108/416 (25%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
CAGC + ILDRF+L LDR WH KC++C +C L E+CFSR +YCK+DFF+ FGTKC
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKC 95
Query: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
A C GI P+ +VRRA+ V+HL+CF C++C +QL+TG+E Y++++++ VCK DY
Sbjct: 96 AACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY----- 150
Query: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGP 183
E+A + EA AKR P
Sbjct: 151 ---------------------------------ETAKQREAEA----------TAKR--P 165
Query: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSA 243
RTTI AKQLETLK+A+ +PKP RH+REQL+ ETGL+MRV+QVWFQNRR+KE+R+K+ A
Sbjct: 166 RTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK-DA 224
Query: 244 LGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSS 303
R +FR+ +R R G + D +G S
Sbjct: 225 GRQRWGQYFRNMKRSRG---------------------------GSKSDKDSVQEGQDSD 257
Query: 304 QAQTPVDLPFVPSSGPSGTPLGGLEHPLPG-HHPSSEAQRFT---DILAHP-------PG 352
+ D P + GP+ G L P PS F+ LA P PG
Sbjct: 258 AEVSFPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLEHGGLAGPEQYRELRPG 317
Query: 353 D------SPSPEPSLPGPLHSMSAEVF-------------GPSPPFSSLSVNGGAS 389
SP+ SLPGP +S+ V+ G PP L+ NG +S
Sbjct: 318 SPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPPPMRVLAGNGPSS 373
>gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]
Length = 372
Score = 194 bits (493), Expect = 1e-49
Identities = 98/247 (39%), Positives = 146/247 (59%), Gaps = 22/247 (8%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
C GC+RPI DRFL+ V + +WH +C+QC C+ LT C+ R+ KLYCK D+ + F KC
Sbjct: 33 CEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKC 92
Query: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
+GC + I+P++ V RA V+HL CF C +C +QL G+E +++ E + +CK DY
Sbjct: 93 SGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDE-FVLKEGQLLCKGDY----- 146
Query: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKR-RG 182
KE L S S+SPD D + + +D + + + S + D +R +
Sbjct: 147 -EKEKDLLS-------SVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKR 198
Query: 183 PRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLS 242
PRT + +Q KA+F + KP R +RE LA ETGL++RV+QVWFQN+R+K +++
Sbjct: 199 PRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL---- 254
Query: 243 ALGARRH 249
ARRH
Sbjct: 255 ---ARRH 258
>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
[Homo sapiens]
Length = 382
Score = 192 bits (488), Expect = 5e-49
Identities = 98/235 (41%), Positives = 139/235 (59%), Gaps = 16/235 (6%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
C GC+R ILDRFLL + D WH +CVQC CK L CF R+ KLYCK D+ + F KC
Sbjct: 35 CEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKC 94
Query: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSS 123
GC + I+P++ V RA+ V+HL+CF C +C +QL G+E +++ E + +CK DY
Sbjct: 95 GGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDE-FVLKEGQLLCKGDY----- 148
Query: 124 VAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKRRGP 183
KE L S +SP + D + D D ES S AG ++ + + P
Sbjct: 149 -EKERELLSL-------VSPAASDSGKSD--DEESLCKSAHGAGKGTAEEGKDHKRPKRP 198
Query: 184 RTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRM 238
RT + +Q KA+F + KP R +RE LA ETGL++RV+QVWFQN+R+K +++
Sbjct: 199 RTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKL 253
>gi|115387114 islet-1 [Homo sapiens]
Length = 349
Score = 165 bits (417), Expect = 8e-41
Identities = 93/245 (37%), Positives = 135/245 (55%), Gaps = 22/245 (8%)
Query: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDFFRCFG 60
C GC I D+++L V D WH C++C EC L E C F R+GK YCK D+ R +G
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRLYG 76
Query: 61 TKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLS 120
KCA C+ G S +D V RARSKV+H+ CF C+ C++QL G+E + + E+ C+ D+
Sbjct: 77 IKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDE-FALREDGLFCRADH-- 133
Query: 121 NSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGAKR 180
+ + A+ G+ LSP A + SA ++ + K
Sbjct: 134 -------DVVERASLGAGDPLSPLHPARPLQMAAEPISARQPALRPHVHKQPE-----KT 181
Query: 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR--- 237
RT + KQL TL+ +AA P+P ++EQL + TGL+ RVI+VWFQN+R K+++
Sbjct: 182 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 241
Query: 238 -MKQL 241
MKQL
Sbjct: 242 MMKQL 246
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 165 bits (417), Expect = 8e-41
Identities = 97/271 (35%), Positives = 143/271 (52%), Gaps = 37/271 (13%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFRCFGT 61
CAGC I DR+ L +D+ WH++C++CCECK NL + CFS++G +YCK D++R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSV 112
Query: 62 -KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKF-------V 113
+CA C GIS S++V RAR V+HLNCFTC CNK L+TG+ + D + +
Sbjct: 113 QRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEAL 172
Query: 114 CKEDYLSN----------SSVAKENSLHSATTGSDPSLSP----------------DSQD 147
+ +Y ++ ++ A S G++P P S
Sbjct: 173 LQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPG 232
Query: 148 PSQDDAKDSESANVSDKEAGSNENDDQNLGA-KRRGPRTTIKAKQLETLKAAFAATPKPT 206
P D A + + + ++ +A + D + K + RT+ K QL T+K+ FA P
Sbjct: 233 PGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPD 292
Query: 207 RHIREQLAQETGLNMRVIQVWFQNRRSKERR 237
+QLAQ+TGL RV+QVWFQN R+K RR
Sbjct: 293 AKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 323
>gi|21956641 ISL LIM homeobox 2 [Homo sapiens]
Length = 359
Score = 164 bits (414), Expect = 2e-40
Identities = 96/247 (38%), Positives = 131/247 (53%), Gaps = 26/247 (10%)
Query: 4 CAGCKRPILDRFLLNVL-DRAWHVKCVQCCECKCNLTEKC--FSREGKLYCKNDFFRCFG 60
C GC I D+F+L V D WH C++C EC L E C F R+GK YCK D+ R FG
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFG 86
Query: 61 TKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLS 120
KCA C G S SDLV RAR V+H+ CF C +C++QL G+E + + E++ +C+ D+
Sbjct: 87 IKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDE-FSLREHELLCRADH-- 143
Query: 121 NSSVAKENSLHSATTGS--DPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGA 178
L A GS P P ++ DA + E
Sbjct: 144 ------GLLLERAAAGSPRSPGPLPGARGLHLPDAGSGRQPALRPHVHKQTE-------- 189
Query: 179 KRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR- 237
K RT + KQL TL+ +AA P+P ++EQL + TGL+ RVI+VWFQN+R K+++
Sbjct: 190 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKK 249
Query: 238 ---MKQL 241
MKQL
Sbjct: 250 SILMKQL 256
>gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens]
Length = 397
Score = 161 bits (408), Expect = 9e-40
Identities = 95/258 (36%), Positives = 138/258 (53%), Gaps = 28/258 (10%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFRCFGT 61
CAGC I DR+ L +D+ WH++C++CCECK L + CF+++G +YCK D++R F
Sbjct: 71 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 130
Query: 62 -KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY-- 118
+CA C GIS S++V RAR V+HL+CFTC CNK L+TG+ + D + C+ +
Sbjct: 131 QRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVY-CRAHFET 189
Query: 119 ---------LSNSSV-AKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGS 168
LS + + AK L ++ + A + N + +G
Sbjct: 190 LLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYN---SGC 246
Query: 169 NENDDQNL---------GAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGL 219
NEN+ +L K + RT+ K QL T+K+ FA P +QLAQ+TGL
Sbjct: 247 NENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGL 306
Query: 220 NMRVIQVWFQNRRSKERR 237
RV+QVWFQN R+K RR
Sbjct: 307 TKRVLQVWFQNARAKFRR 324
>gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens]
Length = 388
Score = 161 bits (408), Expect = 9e-40
Identities = 95/258 (36%), Positives = 138/258 (53%), Gaps = 28/258 (10%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFRCFGT 61
CAGC I DR+ L +D+ WH++C++CCECK L + CF+++G +YCK D++R F
Sbjct: 62 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSV 121
Query: 62 -KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY-- 118
+CA C GIS S++V RAR V+HL+CFTC CNK L+TG+ + D + C+ +
Sbjct: 122 QRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVY-CRAHFET 180
Query: 119 ---------LSNSSV-AKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGS 168
LS + + AK L ++ + A + N + +G
Sbjct: 181 LLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYN---SGC 237
Query: 169 NENDDQNL---------GAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGL 219
NEN+ +L K + RT+ K QL T+K+ FA P +QLAQ+TGL
Sbjct: 238 NENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGL 297
Query: 220 NMRVIQVWFQNRRSKERR 237
RV+QVWFQN R+K RR
Sbjct: 298 TKRVLQVWFQNARAKFRR 315
>gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]
Length = 377
Score = 159 bits (401), Expect = 6e-39
Identities = 90/239 (37%), Positives = 128/239 (53%), Gaps = 37/239 (15%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFRCFGT 61
C+ C ILDR+LL V + WHV+C++C C+ +L ++ C+ + +++CK D+F FGT
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGT 158
Query: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY--- 118
KCA C + I SD VRRAR +HL CF C C +QLSTGEE +++E K +C+ Y
Sbjct: 159 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 217
Query: 119 LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGA 178
+ N A EN G+ PS E D Q A
Sbjct: 218 IENLKRAAENGNGLTLEGAVPS-----------------------------EQDSQPKPA 248
Query: 179 KRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR 237
KR RT+ A+QL+ ++A FA P ++LA TGL+ RVIQVWFQN R++ ++
Sbjct: 249 KRA--RTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]
Length = 392
Score = 159 bits (401), Expect = 6e-39
Identities = 90/239 (37%), Positives = 128/239 (53%), Gaps = 37/239 (15%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFRCFGT 61
C+ C ILDR+LL V + WHV+C++C C+ +L ++ C+ + +++CK D+F FGT
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGT 158
Query: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY--- 118
KCA C + I SD VRRAR +HL CF C C +QLSTGEE +++E K +C+ Y
Sbjct: 159 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEE-KVLCRIHYDTM 217
Query: 119 LSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEAGSNENDDQNLGA 178
+ N A EN G+ PS E D Q A
Sbjct: 218 IENLKRAAENGNGLTLEGAVPS-----------------------------EQDSQPKPA 248
Query: 179 KRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR 237
KR RT+ A+QL+ ++A FA P ++LA TGL+ RVIQVWFQN R++ ++
Sbjct: 249 KRA--RTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK 305
>gi|50083287 LIM homeobox 8 [Homo sapiens]
Length = 356
Score = 149 bits (377), Expect = 3e-36
Identities = 81/237 (34%), Positives = 123/237 (51%), Gaps = 32/237 (13%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE--KCFSREGKLYCKNDFFRCFGT 61
C C I+D++LL V D WHV+C+ C C+ +L C+ ++ ++CK D+FR +GT
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGT 134
Query: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSN 121
+C+ C + I +D VRRA+ V+HL CF C C +QLSTGEE +++E K +C+ Y
Sbjct: 135 RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEE-KVLCRVHY--- 190
Query: 122 SSVAKENSLHSATTGSDPSLSPDSQDPSQDDAK-DSESANVSDKEAGSNENDDQNLGAKR 180
D D+ K + E+ N E D N
Sbjct: 191 -------------------------DCMLDNLKREVENGNGISVEGALLTEQDVNHPKPA 225
Query: 181 RGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERR 237
+ RT+ A QL+ ++A FA P ++LA+ TGL+ RVIQVWFQN R++ ++
Sbjct: 226 KRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKK 282
>gi|4505005 LIM domain only 1 [Homo sapiens]
Length = 156
Score = 108 bits (269), Expect = 1e-23
Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 6/120 (5%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
CAGC R I DR+LL LD+ WH C++C C C L E +++ + C+ D+ R FG
Sbjct: 24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 83
Query: 61 T--KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
T CA C++ I ++V RAR V+HL+CF C +CN++ G++ + + N +C+ DY
Sbjct: 84 TTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDK-FFLKNNMILCQMDY 142
Score = 35.8 bits (81), Expect = 0.071
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 63 CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLS-TGEELYIIDENKFVCKEDYL 119
CAGC + I L++ A K +H +C C C+ +L G LY N +C+ DYL
Sbjct: 24 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYT-KANLILCRRDYL 79
>gi|5803072 LIM domain only 4 [Homo sapiens]
Length = 165
Score = 107 bits (266), Expect = 3e-23
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
CAGC I DRFLL +D WH +C++C C+ L + C+++ G + C+ND+ R FG
Sbjct: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
Query: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
C+ C Q I S+LV RA+ V+HL CFTC C +L G+ + I+ + F C+ D
Sbjct: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLF-CEHDR 141
Query: 119 LSNSSVAKENSLHS 132
+ NSL S
Sbjct: 142 PTALINGHLNSLQS 155
>gi|21361802 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 105 bits (262), Expect = 7e-23
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
CAGC R I DR+LL LD+ WH C++C C C L E +++ + C+ D+ R FG
Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 72
Query: 61 T--KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
CA C++ I ++V RA+ V+HL+CF C +CN++ G++ + + N +C+ DY
Sbjct: 73 VTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDK-FFLKNNMILCQTDY 131
Score = 35.8 bits (81), Expect = 0.071
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 63 CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLS-TGEELYIIDENKFVCKEDYL 119
CAGC + I L++ A K +H +C C C+ +L G LY N +C+ DYL
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYT-KANLILCRRDYL 68
>gi|47778935 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 105 bits (262), Expect = 7e-23
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
CAGC R I DR+LL LD+ WH C++C C C L E +++ + C+ D+ R FG
Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 72
Query: 61 T--KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
CA C++ I ++V RA+ V+HL+CF C +CN++ G++ + + N +C+ DY
Sbjct: 73 VTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDK-FFLKNNMILCQTDY 131
Score = 35.8 bits (81), Expect = 0.071
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 63 CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLS-TGEELYIIDENKFVCKEDYL 119
CAGC + I L++ A K +H +C C C+ +L G LY N +C+ DYL
Sbjct: 13 CAGCNRKIKDRYLLK-ALDKYWHEDCLKCACCDCRLGEVGSTLYT-KANLILCRRDYL 68
>gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 92.4 bits (228), Expect = 6e-19
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFR 57
++ C GC++ I DR+ L +D+ WH C+ C C C L E + + + G+ C+ D+ R
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 58 CFGTK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK 115
FG CA C + I ++ R + KV+HL CF C C K G+ Y++ + VC+
Sbjct: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCE 145
Query: 116 ED 117
+D
Sbjct: 146 QD 147
>gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 92.4 bits (228), Expect = 6e-19
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFR 57
++ C GC++ I DR+ L +D+ WH C+ C C C L E + + + G+ C+ D+ R
Sbjct: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
Query: 58 CFGTK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK 115
FG CA C + I ++ R + KV+HL CF C C K G+ Y++ + VC+
Sbjct: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCE 145
Query: 116 ED 117
+D
Sbjct: 146 QD 147
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 92.4 bits (228), Expect = 6e-19
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFR 57
++ C GC++ I DR+ L +D+ WH C+ C C C L E + + + G+ C+ D+ R
Sbjct: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
Query: 58 CFGTK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK 115
FG CA C + I ++ R + KV+HL CF C C K G+ Y++ + VC+
Sbjct: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCE 214
Query: 116 ED 117
+D
Sbjct: 215 QD 216
>gi|4505001 LIM domain kinase 1 [Homo sapiens]
Length = 647
Score = 89.4 bits (220), Expect = 5e-18
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
CA C + I D L L+ WH C +CC+C +L+ + + ++G+L+CK D++ +G C
Sbjct: 25 CASCGQRIYDGQYLQALNADWHADCFRCCDCSASLSHQYYEKDGQLFCKKDYWARYGESC 84
Query: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
GC++ I+ LV A +H CF C+ C + G+ +++ +K C Y
Sbjct: 85 HGCSEQIT-KGLVMVAGELKYHPECFICLTCGTFIGDGDTYTLVEHSKLYCGHCY 138
>gi|7662330 actin binding LIM protein family, member 3 [Homo
sapiens]
Length = 683
Score = 89.0 bits (219), Expect = 7e-18
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 11/143 (7%)
Query: 3 HCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTK 62
HCAGCK I L LD+ WHV C +C C LT + S++G YC++D+ FG K
Sbjct: 150 HCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQFGIK 209
Query: 63 CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKF--VCKEDYLS 120
C C + I S V A K +H C C+ C++ + GEE+Y+ + +CK+
Sbjct: 210 CETCDRYI--SGRVLEAGGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQ---- 263
Query: 121 NSSVAKENSLHSATTGSDPSLSP 143
++ A++ H T S+ S+SP
Sbjct: 264 -AARAEKKLKHRRT--SETSISP 283
Score = 55.1 bits (131), Expect = 1e-07
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 16 LLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLY-CKNDFFRCFGTKCAGCAQGISPSD 74
++ V + +H++C C C C L + F + + Y C D+ + +GT+C C I+
Sbjct: 34 VVRVHNNHFHIRCFTCQVCGCGLAQSGFFFKNQEYICTQDYQQLYGTRCDSCRDFITGE- 92
Query: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEEL 104
V A + +H CF C +C K G+++
Sbjct: 93 -VISALGRTYHPKCFVCSLCRKPFPIGDKV 121
Score = 33.9 bits (76), Expect = 0.27
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 76 VRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
V R + FH+ CFTC +C L+ + + +++C +DY
Sbjct: 34 VVRVHNNHFHIRCFTCQVCGCGLA--QSGFFFKNQEYICTQDY 74
>gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens]
Length = 746
Score = 86.3 bits (212), Expect = 5e-17
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 3 HCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTK 62
+CAGC R I + L LD+ WH+ C +C C LT + S++G YC+ D+ FG K
Sbjct: 165 NCAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGAPYCEKDYQGLFGVK 224
Query: 63 CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKF--VCKEDYLS 120
C C Q I+ V A K +H +C C CN+ + GEE+Y+ + CK+ +
Sbjct: 225 CEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKT 282
Query: 121 NSSVAKENSLHSAT-----------TGSDPSLSP 143
+ N S++ TG PSL P
Sbjct: 283 EEKLRLPNIRRSSSDFFYSKSLIRRTGRSPSLQP 316
Score = 70.9 bits (172), Expect = 2e-12
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK-CFSREGKLYCKNDFFRCF 59
++HC C P +L V + +H+KC C C C+L + F + G+ C D+ R +
Sbjct: 36 VIHCHKCGEPCKGE-VLRVQTKHFHIKCFTCKVCGCDLAQGGFFIKNGEYLCTLDYQRMY 94
Query: 60 GTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYL 119
GT+C GC + + V A K +H NCF C +C + G+ + + +C+
Sbjct: 95 GTRCHGCGEFVEGE--VVTALGKTYHPNCFACTICKRPFPPGDRV-TFNGRDCLCQLCAQ 151
Query: 120 SNSSVAKENSLHSATTG 136
SS KE + S G
Sbjct: 152 PMSSSPKETTFSSNCAG 168
>gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens]
Length = 718
Score = 84.0 bits (206), Expect = 2e-16
Identities = 51/147 (34%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 3 HCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTK 62
+CAGC R I + L LD+ WH+ C +C C LT + S++G YC+ D+ FG K
Sbjct: 165 NCAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGAPYCEKDYQGLFGVK 224
Query: 63 CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNS 122
C C Q I+ V A K +H +C C CN+ + GEE+Y+ + V D
Sbjct: 225 CEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYL--QGSTVWHPD--CKQ 278
Query: 123 SVAKENSLHSATTGSDPSLS-PDSQDP 148
S E L T S+ S P S P
Sbjct: 279 STKTEEKLRPTRTSSESIYSRPGSSIP 305
Score = 70.9 bits (172), Expect = 2e-12
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK-CFSREGKLYCKNDFFRCF 59
++HC C P +L V + +H+KC C C C+L + F + G+ C D+ R +
Sbjct: 36 VIHCHKCGEPCKGE-VLRVQTKHFHIKCFTCKVCGCDLAQGGFFIKNGEYLCTLDYQRMY 94
Query: 60 GTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYL 119
GT+C GC + + V A K +H NCF C +C + G+ + + +C+
Sbjct: 95 GTRCHGCGEFVEGE--VVTALGKTYHPNCFACTICKRPFPPGDRV-TFNGRDCLCQLCAQ 151
Query: 120 SNSSVAKENSLHSATTG 136
SS KE + S G
Sbjct: 152 PMSSSPKETTFSSNCAG 168
>gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens]
Length = 778
Score = 84.0 bits (206), Expect = 2e-16
Identities = 51/147 (34%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 3 HCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTK 62
+CAGC R I + L LD+ WH+ C +C C LT + S++G YC+ D+ FG K
Sbjct: 225 NCAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGAPYCEKDYQGLFGVK 284
Query: 63 CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNS 122
C C Q I+ V A K +H +C C CN+ + GEE+Y+ + V D
Sbjct: 285 CEACHQFITGK--VLEAGDKHYHPSCARCSRCNQMFTEGEEMYL--QGSTVWHPD--CKQ 338
Query: 123 SVAKENSLHSATTGSDPSLS-PDSQDP 148
S E L T S+ S P S P
Sbjct: 339 STKTEEKLRPTRTSSESIYSRPGSSIP 365
Score = 70.9 bits (172), Expect = 2e-12
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK-CFSREGKLYCKNDFFRCF 59
++HC C P +L V + +H+KC C C C+L + F + G+ C D+ R +
Sbjct: 96 VIHCHKCGEPCKGE-VLRVQTKHFHIKCFTCKVCGCDLAQGGFFIKNGEYLCTLDYQRMY 154
Query: 60 GTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYL 119
GT+C GC + + V A K +H NCF C +C + G+ + + +C+
Sbjct: 155 GTRCHGCGEFVEGE--VVTALGKTYHPNCFACTICKRPFPPGDRV-TFNGRDCLCQLCAQ 211
Query: 120 SNSSVAKENSLHSATTG 136
SS KE + S G
Sbjct: 212 PMSSSPKETTFSSNCAG 228
>gi|42741675 PDZ and LIM domain 7 isoform 2 [Homo sapiens]
Length = 423
Score = 73.6 bits (179), Expect = 3e-13
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCF-SREGKLYCKNDFFRCFGTK 62
CA CK+ I +++ L WHV C C CK + + F EG YC+ D+ + FGTK
Sbjct: 307 CAKCKKKITGE-IMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGVPYCERDYEKMFGTK 365
Query: 63 CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSN 121
C GC I D A +H CF C +C Q++ + + +++ +CK S+
Sbjct: 366 CHGCDFKIDAGDRFLEALGFSWHDTCFVCAIC--QINLEGKTFYSKKDRPLCKSHAFSH 422
>gi|11496885 PDZ and LIM domain 7 isoform 1 [Homo sapiens]
Length = 457
Score = 73.6 bits (179), Expect = 3e-13
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCF-SREGKLYCKNDFFRCFGTK 62
CA CK+ I +++ L WHV C C CK + + F EG YC+ D+ + FGTK
Sbjct: 341 CAKCKKKITGE-IMHALKMTWHVHCFTCAACKTPIRNRAFYMEEGVPYCERDYEKMFGTK 399
Query: 63 CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSN 121
C GC I D A +H CF C +C Q++ + + +++ +CK S+
Sbjct: 400 CHGCDFKIDAGDRFLEALGFSWHDTCFVCAIC--QINLEGKTFYSKKDRPLCKSHAFSH 456
>gi|194272207 actin binding LIM protein family, member 2 isoform 7
[Homo sapiens]
Length = 470
Score = 71.6 bits (174), Expect = 1e-12
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKC 63
C GC I + L LD+ WH+ C +C C L + S++G YC+ D+ FG +C
Sbjct: 153 CGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLLNAEYISKDGLPYCEADYHAKFGIRC 212
Query: 64 AGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYI 106
C + I + V A K +H +C C+ C + + GEE+Y+
Sbjct: 213 DSCEKYI--TGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYL 253
Score = 64.7 bits (156), Expect = 1e-10
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 16 LLNVLDRAWHVKCVQCCECKCNLTE-KCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSD 74
+L V D+ +H+KC C C C+L E F R+G+ C D+ R +GT+C C Q I
Sbjct: 35 VLRVQDKYFHIKCFVCKACGCDLAEGGFFVRQGEYICTLDYQRLYGTRCFSCDQFIEGE- 93
Query: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEEL 104
V A K +H +CF C +C G+ +
Sbjct: 94 -VVSALGKTYHPDCFVCAVCRLPFPPGDRV 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,970,042
Number of Sequences: 37866
Number of extensions: 1230551
Number of successful extensions: 8194
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 462
Number of HSP's that attempted gapping in prelim test: 6506
Number of HSP's gapped (non-prelim): 1855
length of query: 406
length of database: 18,247,518
effective HSP length: 105
effective length of query: 301
effective length of database: 14,271,588
effective search space: 4295747988
effective search space used: 4295747988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.