Guide to the Human Genome
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Name: LCE1B Sequence: fasta or formatted (118aa) NCBI GI: 30387656
Description:

late cornified envelope 1B

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine           20.3         24           2
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine            17.8         21           4
 H histidine           4.2          5           2
 I isoleucine          0.8          1           1
 K lysine              4.2          5           1
 L leucine             1.7          2           1
 M methionine          0.8          1           1
 N asparagine          0.8          1           1
 P proline            12.7         15           3
 Q glutamine           7.6          9           3
 R arginine            5.1          6           4
 S serine             21.2         25           3
 T threonine           0.8          1           1
 V valine              1.7          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   late cornified envelope 1B 
LCE1C                 0.969   late cornified envelope 1C 
LOC100292632          0.926   PREDICTED: hypothetical protein 
LCE1E                 0.926   late cornified envelope 1E 
LCE1F                 0.903   late cornified envelope 1F 
LCE1D                 0.822   late cornified envelope 1D 
LCE1A                 0.810   late cornified envelope 1A 
LCE2D                 0.581   late cornified envelope 2D 
LCE2A                 0.574   late cornified envelope 2A 
LCE5A                 0.570   late cornified envelope 5A 
LCE2B                 0.562   late cornified envelope 2B 
LCE2C                 0.558   late cornified envelope 2C 
LCE4A                 0.481   late cornified envelope 4A 
LCE3C                 0.314   late cornified envelope 3C 
LCE3B                 0.310   late cornified envelope 3B 
LCE3E                 0.298   late cornified envelope 3E 
LCE3D                 0.291   late cornified envelope 3D 
LCE3A                 0.287   late cornified envelope 3A 
CRCT1                 0.159   cysteine-rich C-terminal 1 
KRTAP17-1             0.151   keratin associated protein 17-1 
KRTAP5-7              0.143   keratin associated protein 5-7 
KRTAP5-4              0.143   keratin associated protein 5-4 
KRTAP5-2              0.136   keratin associated protein 5-2 
KRTAP5-11             0.136   keratin associated protein 5-11 
KRTAP5-8              0.136   keratin associated protein 5-8 
KRTAP5-1              0.132   keratin associated protein 5-1 
KRTAP5-10             0.132   keratin associated protein 5-10 
KRTAP5-5              0.132   keratin associated protein 5-5 
KRTAP5-6              0.124   keratin associated protein 5-6 
KRTAP5-9              0.120   keratin associated protein 5-9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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