Guide to the Human Genome
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Name: LCE4A Sequence: fasta or formatted (99aa) NCBI GI: 30387642
Description:

late cornified envelope 4A

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.0          1           1
 C cysteine           19.2         19           2
 D aspartate           0.0          0           0
 E glutamate           1.0          1           1
 F phenylalanine       0.0          0           0
 G glycine            16.2         16           3
 H histidine           6.1          6           2
 I isoleucine          2.0          2           1
 K lysine              5.1          5           1
 L leucine             1.0          1           1
 M methionine          1.0          1           1
 N asparagine          2.0          2           1
 P proline            12.1         12           3
 Q glutamine           8.1          8           3
 R arginine            3.0          3           1
 S serine             20.2         20           3
 T threonine           0.0          0           0
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   late cornified envelope 4A 
LCE5A                 0.640   late cornified envelope 5A 
LOC100292632          0.589   PREDICTED: hypothetical protein 
LCE1E                 0.589   late cornified envelope 1E 
LCE1C                 0.579   late cornified envelope 1C 
LCE1B                 0.579   late cornified envelope 1B 
LCE2A                 0.570   late cornified envelope 2A 
LCE1F                 0.551   late cornified envelope 1F 
LCE1A                 0.547   late cornified envelope 1A 
LCE1D                 0.537   late cornified envelope 1D 
LCE2D                 0.533   late cornified envelope 2D 
LCE2B                 0.528   late cornified envelope 2B 
LCE2C                 0.509   late cornified envelope 2C 
LCE3E                 0.477   late cornified envelope 3E 
LCE3C                 0.467   late cornified envelope 3C 
LCE3D                 0.458   late cornified envelope 3D 
LCE3B                 0.453   late cornified envelope 3B 
LCE3A                 0.388   late cornified envelope 3A 
CRCT1                 0.154   cysteine-rich C-terminal 1 
KRTAP5-2              0.131   keratin associated protein 5-2 
KRTAP17-1             0.126   keratin associated protein 17-1 
SPRR2A                0.121   small proline-rich protein 2A 
SPRR2B                0.121   small proline-rich protein 2B 
SPRR2E                0.121   small proline-rich protein 2E 
KRTAP5-11             0.117   keratin associated protein 5-11 
SPRR2F                0.117   small proline-rich protein 2F 
SPRR2D                0.107   small proline-rich protein 2D 
KRTAP5-9              0.107   keratin associated protein 5-9 
KRTAP5-4              0.103   keratin associated protein 5-4 
KRTAP10-6             0.103   keratin associated protein 10-6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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