Guide to the Human Genome
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Name: LCE3A Sequence: fasta or formatted (89aa) NCBI GI: 30410039
Description:

late cornified envelope 3A

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6          5           1
 C cysteine           16.9         15           2
 D aspartate           1.1          1           1
 E glutamate           1.1          1           1
 F phenylalanine       0.0          0           0
 G glycine            10.1          9           2
 H histidine           4.5          4           2
 I isoleucine          0.0          0           0
 K lysine              2.2          2           1
 L leucine             2.2          2           1
 M methionine          1.1          1           1
 N asparagine          2.2          2           1
 P proline            10.1          9           3
 Q glutamine          11.2         10           3
 R arginine            7.9          7           2
 S serine             23.6         21           3
 T threonine           0.0          0           0
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   late cornified envelope 3A 
LCE3C                 0.743   late cornified envelope 3C 
LCE3D                 0.737   late cornified envelope 3D 
LCE3B                 0.715   late cornified envelope 3B 
LCE3E                 0.715   late cornified envelope 3E 
LCE5A                 0.492   late cornified envelope 5A 
LCE4A                 0.464   late cornified envelope 4A 
LCE2A                 0.436   late cornified envelope 2A 
LCE2B                 0.436   late cornified envelope 2B 
LCE2D                 0.436   late cornified envelope 2D 
LCE1A                 0.419   late cornified envelope 1A 
LCE2C                 0.419   late cornified envelope 2C 
LCE1B                 0.413   late cornified envelope 1B 
LOC100292632          0.408   PREDICTED: hypothetical protein 
LCE1E                 0.408   late cornified envelope 1E 
LCE1F                 0.402   late cornified envelope 1F 
LCE1C                 0.397   late cornified envelope 1C 
LCE1D                 0.397   late cornified envelope 1D 
CRCT1                 0.134   cysteine-rich C-terminal 1 
KRTAP5-11             0.112   keratin associated protein 5-11 
KRTAP5-2              0.106   keratin associated protein 5-2 
LCE6A                 0.101   late cornified envelope 6A 
KRTAP5-7              0.101   keratin associated protein 5-7 
KRTAP5-4              0.101   keratin associated protein 5-4 
KRTAP5-9              0.089   keratin associated protein 5-9 
KRTAP5-1              0.089   keratin associated protein 5-1 
KRTAP5-8              0.084   keratin associated protein 5-8 
MEGF6                 0.084   EGF-like-domain, multiple 3 
KRTAP5-5              0.084   keratin associated protein 5-5 
KRTAP5-6              0.084   keratin associated protein 5-6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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