Guide to the Human Genome
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Name: LCE1C Sequence: fasta or formatted (118aa) NCBI GI: 30387652
Description:

late cornified envelope 1C

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine           20.3         24           2
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine            17.8         21           4
 H histidine           4.2          5           2
 I isoleucine          0.0          0           0
 K lysine              5.1          6           1
 L leucine             0.8          1           1
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline            13.6         16           3
 Q glutamine           7.6          9           3
 R arginine            4.2          5           4
 S serine             22.0         26           3
 T threonine           1.7          2           1
 V valine              1.7          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   late cornified envelope 1C 
LCE1B                 0.969   late cornified envelope 1B 
LOC100292632          0.957   PREDICTED: hypothetical protein 
LCE1E                 0.957   late cornified envelope 1E 
LCE1F                 0.934   late cornified envelope 1F 
LCE1D                 0.849   late cornified envelope 1D 
LCE1A                 0.845   late cornified envelope 1A 
LCE2D                 0.593   late cornified envelope 2D 
LCE5A                 0.589   late cornified envelope 5A 
LCE2A                 0.585   late cornified envelope 2A 
LCE2B                 0.574   late cornified envelope 2B 
LCE2C                 0.570   late cornified envelope 2C 
LCE4A                 0.481   late cornified envelope 4A 
LCE3C                 0.326   late cornified envelope 3C 
LCE3B                 0.318   late cornified envelope 3B 
LCE3E                 0.310   late cornified envelope 3E 
LCE3D                 0.298   late cornified envelope 3D 
LCE3A                 0.275   late cornified envelope 3A 
CRCT1                 0.174   cysteine-rich C-terminal 1 
SPRR2A                0.147   small proline-rich protein 2A 
SPRR2B                0.147   small proline-rich protein 2B 
SPRR2E                0.147   small proline-rich protein 2E 
KRTAP17-1             0.143   keratin associated protein 17-1 
SPRR2G                0.140   small proline-rich protein 2G 
KRTAP5-4              0.140   keratin associated protein 5-4 
KRTAP5-7              0.136   keratin associated protein 5-7 
KRTAP5-2              0.136   keratin associated protein 5-2 
SPRR2F                0.136   small proline-rich protein 2F 
KRTAP5-10             0.136   keratin associated protein 5-10 
KRTAP5-11             0.136   keratin associated protein 5-11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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