Guide to the Human Genome
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Name: LOC100292632 Sequence: fasta or formatted (118aa) NCBI GI: 239752912
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine           19.5         23           2
 D aspartate           0.8          1           1
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine            16.9         20           4
 H histidine           5.9          7           2
 I isoleucine          0.0          0           0
 K lysine              5.1          6           1
 L leucine             0.8          1           1
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline            13.6         16           3
 Q glutamine           7.6          9           3
 R arginine            3.4          4           1
 S serine             22.0         26           3
 T threonine           1.7          2           1
 V valine              1.7          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LCE1E                 1.000   late cornified envelope 1E 
LCE1C                 0.954   late cornified envelope 1C 
LCE1F                 0.938   late cornified envelope 1F 
LCE1B                 0.923   late cornified envelope 1B 
LCE1D                 0.873   late cornified envelope 1D 
LCE1A                 0.846   late cornified envelope 1A 
LCE2D                 0.606   late cornified envelope 2D 
LCE2A                 0.598   late cornified envelope 2A 
LCE5A                 0.591   late cornified envelope 5A 
LCE2B                 0.587   late cornified envelope 2B 
LCE2C                 0.583   late cornified envelope 2C 
LCE4A                 0.486   late cornified envelope 4A 
LCE3C                 0.347   late cornified envelope 3C 
LCE3D                 0.336   late cornified envelope 3D 
LCE3B                 0.328   late cornified envelope 3B 
LCE3E                 0.317   late cornified envelope 3E 
LCE3A                 0.282   late cornified envelope 3A 
CRCT1                 0.154   cysteine-rich C-terminal 1 
SPRR2A                0.147   small proline-rich protein 2A 
SPRR2B                0.147   small proline-rich protein 2B 
SPRR2E                0.147   small proline-rich protein 2E 
KRTAP17-1             0.139   keratin associated protein 17-1 
SPRR2G                0.139   small proline-rich protein 2G 
SPRR2F                0.135   small proline-rich protein 2F 
KRTAP5-2              0.135   keratin associated protein 5-2 
KRTAP5-7              0.127   keratin associated protein 5-7 
KRTAP5-4              0.127   keratin associated protein 5-4 
KRTAP5-10             0.124   keratin associated protein 5-10 
KRTAP5-11             0.124   keratin associated protein 5-11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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