Guide to the Human Genome
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Name: LCE2B Sequence: fasta or formatted (110aa) NCBI GI: 7657685
Description:

late cornified envelope 2B

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7          3           1
 C cysteine           20.9         23           2
 D aspartate           0.9          1           1
 E glutamate           1.8          2           1
 F phenylalanine       0.9          1           1
 G glycine            12.7         14           2
 H histidine           4.5          5           2
 I isoleucine          0.9          1           1
 K lysine              4.5          5           1
 L leucine             2.7          3           1
 M methionine          0.9          1           1
 N asparagine          1.8          2           1
 P proline            17.3         19           3
 Q glutamine           7.3          8           3
 R arginine            4.5          5           3
 S serine             13.6         15           2
 T threonine           0.9          1           1
 V valine              0.9          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   late cornified envelope 2B 
LCE2D                 0.947   late cornified envelope 2D 
LCE2C                 0.935   late cornified envelope 2C 
LCE2A                 0.849   late cornified envelope 2A 
LOC100292632          0.620   PREDICTED: hypothetical protein 
LCE1E                 0.620   late cornified envelope 1E 
LCE1F                 0.612   late cornified envelope 1F 
LCE1D                 0.604   late cornified envelope 1D 
LCE1C                 0.604   late cornified envelope 1C 
LCE5A                 0.592   late cornified envelope 5A 
LCE1B                 0.592   late cornified envelope 1B 
LCE1A                 0.576   late cornified envelope 1A 
LCE4A                 0.461   late cornified envelope 4A 
LCE3D                 0.388   late cornified envelope 3D 
LCE3E                 0.388   late cornified envelope 3E 
LCE3B                 0.359   late cornified envelope 3B 
LCE3C                 0.331   late cornified envelope 3C 
LCE3A                 0.318   late cornified envelope 3A 
SPRR2F                0.122   small proline-rich protein 2F 
CRCT1                 0.118   cysteine-rich C-terminal 1 
KRTAP17-1             0.118   keratin associated protein 17-1 
SPRR2E                0.118   small proline-rich protein 2E 
SPRR1B                0.118   small proline-rich protein 1B 
SPRR1A                0.118   small proline-rich protein 1A 
KRTAP10-12            0.114   keratin associated protein 10-12 
SPRR2G                0.110   small proline-rich protein 2G 
KRTAP10-7             0.110   keratin associated protein 10-7 
SPRR2D                0.106   small proline-rich protein 2D 
KRTAP10-6             0.106   keratin associated protein 10-6 
SPRR2A                0.106   small proline-rich protein 2A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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