Guide to the Human Genome
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Name: LCE3B Sequence: fasta or formatted (95aa) NCBI GI: 30410041
Description:

late cornified envelope 3B

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          4           1
 C cysteine           18.9         18           2
 D aspartate           3.2          3           1
 E glutamate           1.1          1           1
 F phenylalanine       0.0          0           0
 G glycine            12.6         12           2
 H histidine           3.2          3           2
 I isoleucine          0.0          0           0
 K lysine              3.2          3           1
 L leucine             3.2          3           1
 M methionine          1.1          1           1
 N asparagine          2.1          2           1
 P proline            11.6         11           2
 Q glutamine          10.5         10           3
 R arginine            7.4          7           2
 S serine             16.8         16           2
 T threonine           0.0          0           0
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   late cornified envelope 3B 
LCE3D                 0.705   late cornified envelope 3D 
LCE3C                 0.685   late cornified envelope 3C 
LCE3E                 0.680   late cornified envelope 3E 
LCE3A                 0.640   late cornified envelope 3A 
LCE4A                 0.485   late cornified envelope 4A 
LCE2D                 0.455   late cornified envelope 2D 
LCE5A                 0.445   late cornified envelope 5A 
LCE2B                 0.440   late cornified envelope 2B 
LCE2C                 0.435   late cornified envelope 2C 
LCE1A                 0.425   late cornified envelope 1A 
LOC100292632          0.425   PREDICTED: hypothetical protein 
LCE1E                 0.425   late cornified envelope 1E 
LCE2A                 0.415   late cornified envelope 2A 
LCE1F                 0.415   late cornified envelope 1F 
LCE1C                 0.410   late cornified envelope 1C 
LCE1D                 0.405   late cornified envelope 1D 
LCE1B                 0.400   late cornified envelope 1B 
CRCT1                 0.125   cysteine-rich C-terminal 1 
SPRR2A                0.085   small proline-rich protein 2A 
SPRR2B                0.085   small proline-rich protein 2B 
SPRR2E                0.085   small proline-rich protein 2E 
SPRR2D                0.080   small proline-rich protein 2D 
KRTAP4-8              0.080   PREDICTED: keratin associated protein 4-8 
SMCP                  0.080   sperm mitochondria-associated cysteine-rich protein ...
KRTAP17-1             0.075   keratin associated protein 17-1 
KRTAP10-11            0.075   keratin associated protein 10-11 
SPRR2G                0.075   small proline-rich protein 2G 
KRTAP10-4             0.075   keratin associated protein 10-4 
KRTAP10-1             0.075   keratin associated protein 10-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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