Guide to the Human Genome
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Name: LCE3C Sequence: fasta or formatted (94aa) NCBI GI: 30410037
Description:

late cornified envelope 3C

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.1          2           1
 C cysteine           14.9         14           2
 D aspartate           2.1          2           1
 E glutamate           1.1          1           1
 F phenylalanine       1.1          1           1
 G glycine            13.8         13           3
 H histidine           5.3          5           2
 I isoleucine          0.0          0           0
 K lysine              2.1          2           1
 L leucine             3.2          3           1
 M methionine          1.1          1           1
 N asparagine          2.1          2           1
 P proline            12.8         12           3
 Q glutamine          11.7         11           3
 R arginine            7.4          7           2
 S serine             19.1         18           2
 T threonine           0.0          0           0
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   late cornified envelope 3C 
LCE3D                 0.785   late cornified envelope 3D 
LCE3E                 0.764   late cornified envelope 3E 
LCE3B                 0.703   late cornified envelope 3B 
LCE3A                 0.682   late cornified envelope 3A 
LCE4A                 0.513   late cornified envelope 4A 
LCE5A                 0.467   late cornified envelope 5A 
LOC100292632          0.462   PREDICTED: hypothetical protein 
LCE1E                 0.462   late cornified envelope 1E 
LCE1A                 0.451   late cornified envelope 1A 
LCE1F                 0.436   late cornified envelope 1F 
LCE1C                 0.431   late cornified envelope 1C 
LCE1D                 0.415   late cornified envelope 1D 
LCE1B                 0.415   late cornified envelope 1B 
LCE2B                 0.415   late cornified envelope 2B 
LCE2A                 0.400   late cornified envelope 2A 
LCE2D                 0.395   late cornified envelope 2D 
LCE2C                 0.395   late cornified envelope 2C 
SPRR2G                0.123   small proline-rich protein 2G 
SPRR2E                0.118   small proline-rich protein 2E 
SPRR2A                0.113   small proline-rich protein 2A 
SPRR2B                0.113   small proline-rich protein 2B 
SPRR2F                0.108   small proline-rich protein 2F 
SPRR2D                0.108   small proline-rich protein 2D 
CRCT1                 0.077   cysteine-rich C-terminal 1 
HOXB3                 0.072   homeobox B3 
IQSEC2                0.067   IQ motif and Sec7 domain 2 isoform1 
KCP                   0.062   cysteine rich BMP regulator 2 isoform 2 
KCP                   0.062   cysteine rich BMP regulator 2 isoform 1 
LOC399829             0.056   PREDICTED: FLJ43861 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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