Guide to the Human Genome
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Name: LCE2A Sequence: fasta or formatted (106aa) NCBI GI: 30410045
Description:

late cornified envelope 2A

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.9          1           1
 C cysteine           21.7         23           2
 D aspartate           1.9          2           1
 E glutamate           1.9          2           1
 F phenylalanine       0.9          1           1
 G glycine            13.2         14           4
 H histidine           5.7          6           2
 I isoleucine          0.0          0           0
 K lysine              3.8          4           1
 L leucine             1.9          2           1
 M methionine          0.9          1           1
 N asparagine          0.9          1           1
 P proline            17.9         19           3
 Q glutamine           7.5          8           3
 R arginine            4.7          5           1
 S serine             15.1         16           3
 T threonine           0.0          0           0
 V valine              0.9          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   late cornified envelope 2A 
LCE2D                 0.871   late cornified envelope 2D 
LCE2B                 0.867   late cornified envelope 2B 
LCE2C                 0.850   late cornified envelope 2C 
LOC100292632          0.646   PREDICTED: hypothetical protein 
LCE1E                 0.646   late cornified envelope 1E 
LCE5A                 0.646   late cornified envelope 5A 
LCE1A                 0.646   late cornified envelope 1A 
LCE1F                 0.646   late cornified envelope 1F 
LCE1C                 0.629   late cornified envelope 1C 
LCE1B                 0.617   late cornified envelope 1B 
LCE1D                 0.592   late cornified envelope 1D 
LCE4A                 0.508   late cornified envelope 4A 
LCE3D                 0.375   late cornified envelope 3D 
LCE3E                 0.371   late cornified envelope 3E 
LCE3B                 0.346   late cornified envelope 3B 
LCE3A                 0.325   late cornified envelope 3A 
LCE3C                 0.325   late cornified envelope 3C 
SPRR2A                0.146   small proline-rich protein 2A 
SPRR2B                0.146   small proline-rich protein 2B 
CRCT1                 0.142   cysteine-rich C-terminal 1 
SPRR2F                0.138   small proline-rich protein 2F 
SPRR2D                0.133   small proline-rich protein 2D 
SPRR2G                0.125   small proline-rich protein 2G 
SPRR2E                0.121   small proline-rich protein 2E 
KRTAP5-3              0.117   keratin associated protein 5-3 
KRTAP5-7              0.113   keratin associated protein 5-7 
LELP1                 0.108   late cornified envelope-like proline-rich 1 
SPRR1A                0.108   small proline-rich protein 1A 
SPRR1B                0.108   small proline-rich protein 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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