Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LCE2D Sequence: fasta or formatted (110aa) NCBI GI: 30410043
Description:

late cornified envelope 2D

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7          3           1
 C cysteine           20.9         23           2
 D aspartate           0.9          1           1
 E glutamate           1.8          2           1
 F phenylalanine       0.9          1           1
 G glycine            11.8         13           4
 H histidine           4.5          5           2
 I isoleucine          0.0          0           0
 K lysine              4.5          5           1
 L leucine             1.8          2           1
 M methionine          0.9          1           1
 N asparagine          0.9          1           1
 P proline            18.2         20           3
 Q glutamine           7.3          8           3
 R arginine            4.5          5           3
 S serine             16.4         18           2
 T threonine           0.9          1           1
 V valine              0.9          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   late cornified envelope 2D 
LCE2C                 0.955   late cornified envelope 2C 
LCE2B                 0.947   late cornified envelope 2B 
LCE2A                 0.853   late cornified envelope 2A 
LOC100292632          0.641   PREDICTED: hypothetical protein 
LCE1E                 0.641   late cornified envelope 1E 
LCE1F                 0.633   late cornified envelope 1F 
LCE1C                 0.624   late cornified envelope 1C 
LCE1D                 0.620   late cornified envelope 1D 
LCE5A                 0.620   late cornified envelope 5A 
LCE1B                 0.612   late cornified envelope 1B 
LCE1A                 0.596   late cornified envelope 1A 
LCE4A                 0.465   late cornified envelope 4A 
LCE3B                 0.371   late cornified envelope 3B 
LCE3E                 0.367   late cornified envelope 3E 
LCE3D                 0.367   late cornified envelope 3D 
LCE3A                 0.318   late cornified envelope 3A 
LCE3C                 0.314   late cornified envelope 3C 
SPRR2A                0.147   small proline-rich protein 2A 
CRCT1                 0.139   cysteine-rich C-terminal 1 
SPRR2G                0.131   small proline-rich protein 2G 
KRTAP17-1             0.122   keratin associated protein 17-1 
SPRR1B                0.122   small proline-rich protein 1B 
SPRR1A                0.122   small proline-rich protein 1A 
SPRR2F                0.118   small proline-rich protein 2F 
KRTAP10-12            0.118   keratin associated protein 10-12 
SPRR2E                0.118   small proline-rich protein 2E 
LELP1                 0.118   late cornified envelope-like proline-rich 1 
SPRR2B                0.118   small proline-rich protein 2B 
LOC728318             0.106   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press