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Search of human proteins with 30179913
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30179913 paired immunoglobulin-like type 2 receptor beta
isoform b [Homo sapiens]
(149 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30179913 paired immunoglobulin-like type 2 receptor beta isof... 328 1e-90
gi|30179915 paired immunoglobulin-like type 2 receptor beta isof... 48 3e-06
gi|30179911 paired immunoglobulin-like type 2 receptor beta isof... 48 3e-06
gi|61966923 forkhead box B2 [Homo sapiens] 42 2e-04
gi|30179909 paired immunoglobulin-like type 2 receptor alpha iso... 40 6e-04
gi|30179907 paired immunoglobulin-like type 2 receptor alpha iso... 40 6e-04
gi|30179905 paired immunoglobulin-like type 2 receptor alpha iso... 40 6e-04
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 40 6e-04
gi|33624896 ADAM metallopeptidase with thrombospondin type 1 mot... 35 0.018
gi|237757346 DDHD domain containing 1 isoform c [Homo sapiens] 35 0.023
gi|237757344 DDHD domain containing 1 isoform b [Homo sapiens] 35 0.023
gi|237757342 DDHD domain containing 1 isoform a [Homo sapiens] 35 0.023
gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regula... 34 0.040
gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regula... 34 0.040
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 34 0.040
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 34 0.040
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 34 0.040
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 34 0.052
gi|83977459 pleckstrin homology-like domain, family A, member 1 ... 34 0.052
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 33 0.068
gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 33 0.089
gi|56550035 colon carcinoma related protein [Homo sapiens] 33 0.089
gi|24797153 faciogenital dysplasia protein [Homo sapiens] 33 0.12
gi|157388908 hypothetical protein LOC54954 [Homo sapiens] 33 0.12
gi|134288896 hypothetical protein LOC143684 [Homo sapiens] 33 0.12
gi|4504489 histidine-rich glycoprotein precursor [Homo sapiens] 33 0.12
gi|55750053 atrophin-1 [Homo sapiens] 32 0.20
gi|55750041 atrophin-1 [Homo sapiens] 32 0.20
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 32 0.20
gi|27894359 nuclear receptor subfamily 4, group A, member 3 isof... 32 0.20
>gi|30179913 paired immunoglobulin-like type 2 receptor beta isoform
b [Homo sapiens]
Length = 149
Score = 328 bits (840), Expect = 1e-90
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MGRPLLLPLLLLLQPPAFLQPGLCEPALSELDRGSGERLPQDLKPAEGGPVCVFLPSRAG 60
MGRPLLLPLLLLLQPPAFLQPGLCEPALSELDRGSGERLPQDLKPAEGGPVCVFLPSRAG
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPGLCEPALSELDRGSGERLPQDLKPAEGGPVCVFLPSRAG 60
Query: 61 HPEIREAAVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQRALRIMAPKSGHCH 120
HPEIREAAVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQRALRIMAPKSGHCH
Sbjct: 61 HPEIREAAVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQRALRIMAPKSGHCH 120
Query: 121 QGCIGCRCAQNCHFGTAVPPPPVVEEKER 149
QGCIGCRCAQNCHFGTAVPPPPVVEEKER
Sbjct: 121 QGCIGCRCAQNCHFGTAVPPPPVVEEKER 149
>gi|30179915 paired immunoglobulin-like type 2 receptor beta
isoform a precursor [Homo sapiens]
Length = 227
Score = 48.1 bits (113), Expect = 3e-06
Identities = 22/22 (100%), Positives = 22/22 (100%)
Query: 1 MGRPLLLPLLLLLQPPAFLQPG 22
MGRPLLLPLLLLLQPPAFLQPG
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPG 22
>gi|30179911 paired immunoglobulin-like type 2 receptor beta
isoform a precursor [Homo sapiens]
Length = 227
Score = 48.1 bits (113), Expect = 3e-06
Identities = 22/22 (100%), Positives = 22/22 (100%)
Query: 1 MGRPLLLPLLLLLQPPAFLQPG 22
MGRPLLLPLLLLLQPPAFLQPG
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPG 22
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 41.6 bits (96), Expect = 2e-04
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 72 HQGDQTHHHPGCHNHHHLEAQQHNHHSRPQ 101
H HHHP H+HHH A H+HH PQ
Sbjct: 135 HLHPHHHHHPHHHHHHHAAAHHHHHHHPPQ 164
Score = 27.7 bits (60), Expect = 3.7
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 13/52 (25%)
Query: 65 REAAVAVHQGDQTHHHPGC-------------HNHHHLEAQQHNHHSRPQGH 103
R V + D TH H G H HHH H+HH H
Sbjct: 105 RRKRFKVLRADHTHLHAGSTKSAPGAGPGGHLHPHHHHHPHHHHHHHAAAHH 156
>gi|30179909 paired immunoglobulin-like type 2 receptor alpha
isoform 1 precursor [Homo sapiens]
Length = 303
Score = 40.4 bits (93), Expect = 6e-04
Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 1 MGRPLLLPLLLLLQPPAFLQP 21
MGRPLLLPLL LL PPAFLQP
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQP 21
>gi|30179907 paired immunoglobulin-like type 2 receptor alpha
isoform 3 precursor [Homo sapiens]
Length = 175
Score = 40.4 bits (93), Expect = 6e-04
Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 1 MGRPLLLPLLLLLQPPAFLQP 21
MGRPLLLPLL LL PPAFLQP
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQP 21
>gi|30179905 paired immunoglobulin-like type 2 receptor alpha
isoform 2 precursor [Homo sapiens]
Length = 230
Score = 40.4 bits (93), Expect = 6e-04
Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 1 MGRPLLLPLLLLLQPPAFLQP 21
MGRPLLLPLL LL PPAFLQP
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQP 21
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 40.4 bits (93), Expect = 6e-04
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 3 RPLLLPLLLLLQPPAFLQPGLCEPALSELDRGSGERLPQD----LKPAEGGPVCVFLPSR 58
R L +P + PP P + + SG P P GGP+ P+
Sbjct: 910 RSLSVPGSEDIPPPPTTSPPEPPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASSPAS 969
Query: 59 AGHPEIREAAVA------VHQGD--QTHHHPGCHNHHHL-EAQQHNHHSRP 100
P + V H G HHHP H+HHH Q H+HH+ P
Sbjct: 970 FDGPSPPDTRVGSREKSLYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHP 1020
>gi|33624896 ADAM metallopeptidase with thrombospondin type 1 motif, 9
preproprotein [Homo sapiens]
Length = 1935
Score = 35.4 bits (80), Expect = 0.018
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 88 HLEAQQHNHHSRPQGHRKQRALRIMAPKSGHCHQGCIGC-RCAQNCHFGTAVPPPPVVEE 146
HLE+ H ++P GHRK R R K+G Q + C R Q H G + + E
Sbjct: 1475 HLESDYCKHLAKPHGHRKCRGGRCPKWKAGAWSQCSVSCGRGVQQRHVGCQIGTHKIARE 1534
Query: 147 KE 148
E
Sbjct: 1535 TE 1536
>gi|237757346 DDHD domain containing 1 isoform c [Homo sapiens]
Length = 900
Score = 35.0 bits (79), Expect = 0.023
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 34 GSGERLPQDLKPAEGGPVCVFLPSRAGHPEIREAAVAVHQGDQ-THHHPGC--HNHH 87
G L D +PA GG VC F G P+ + +A+ +G+ H PG HNHH
Sbjct: 21 GGAWELGSDARPAFGGGVCCFEHLPGGDPDDGDVPLALLRGEPGLHLAPGTDDHNHH 77
>gi|237757344 DDHD domain containing 1 isoform b [Homo sapiens]
Length = 879
Score = 35.0 bits (79), Expect = 0.023
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 34 GSGERLPQDLKPAEGGPVCVFLPSRAGHPEIREAAVAVHQGDQ-THHHPGC--HNHH 87
G L D +PA GG VC F G P+ + +A+ +G+ H PG HNHH
Sbjct: 21 GGAWELGSDARPAFGGGVCCFEHLPGGDPDDGDVPLALLRGEPGLHLAPGTDDHNHH 77
>gi|237757342 DDHD domain containing 1 isoform a [Homo sapiens]
Length = 872
Score = 35.0 bits (79), Expect = 0.023
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 34 GSGERLPQDLKPAEGGPVCVFLPSRAGHPEIREAAVAVHQGDQ-THHHPGC--HNHH 87
G L D +PA GG VC F G P+ + +A+ +G+ H PG HNHH
Sbjct: 21 GGAWELGSDARPAFGGGVCCFEHLPGGDPDDGDVPLALLRGEPGLHLAPGTDDHNHH 77
>gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 2 [Homo sapiens]
Length = 754
Score = 34.3 bits (77), Expect = 0.040
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 61 HPEIREAAVAVHQGDQTHHHPGCHNHHHLEAQQH-NHHSRPQ 101
H ++ A+ H G+ +HHH H+HHH QQ + +RP+
Sbjct: 581 HVAPQQNALHHHHGNSSHHHHHHHHHHHHHGQQALGNRTRPR 622
Score = 33.1 bits (74), Expect = 0.089
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 61 HPEIREAAVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQ 101
HP Q + HHH G +HHH H+HH Q
Sbjct: 573 HPVQETTFHVAPQQNALHHHHGNSSHHHHHHHHHHHHHGQQ 613
Score = 28.9 bits (63), Expect = 1.7
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 66 EAAVAVHQGDQTHHHPG-----CHNHHHLEAQQHNHHSRPQGHRKQRAL 109
+ V H +T H H+HH + H+HH H Q+AL
Sbjct: 567 QVTVETHPVQETTFHVAPQQNALHHHHGNSSHHHHHHHHHHHHHGQQAL 615
>gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 1 [Homo sapiens]
Length = 763
Score = 34.3 bits (77), Expect = 0.040
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 61 HPEIREAAVAVHQGDQTHHHPGCHNHHHLEAQQH-NHHSRPQ 101
H ++ A+ H G+ +HHH H+HHH QQ + +RP+
Sbjct: 590 HVAPQQNALHHHHGNSSHHHHHHHHHHHHHGQQALGNRTRPR 631
Score = 33.1 bits (74), Expect = 0.089
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 61 HPEIREAAVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQ 101
HP Q + HHH G +HHH H+HH Q
Sbjct: 582 HPVQETTFHVAPQQNALHHHHGNSSHHHHHHHHHHHHHGQQ 622
Score = 28.9 bits (63), Expect = 1.7
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 66 EAAVAVHQGDQTHHHPG-----CHNHHHLEAQQHNHHSRPQGHRKQRAL 109
+ V H +T H H+HH + H+HH H Q+AL
Sbjct: 576 QVTVETHPVQETTFHVAPQQNALHHHHGNSSHHHHHHHHHHHHHGQQAL 624
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 34.3 bits (77), Expect = 0.040
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 68 AVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQ 101
A HQ Q HHH H+HHH H+HH+ Q
Sbjct: 19 AAPPHQ--QHHHHHHAHHHHHHAHHLHHHHALQQ 50
Score = 32.0 bits (71), Expect = 0.20
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 64 IREAAVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQR 107
+ EA A HHH H+HHH H+H + Q ++ Q+
Sbjct: 14 VGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQ 57
Score = 28.9 bits (63), Expect = 1.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 72 HQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQR 107
H HHH +HHH QQ N + Q ++Q+
Sbjct: 30 HHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQ 65
Score = 28.5 bits (62), Expect = 2.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 72 HQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQR 107
H HHH H HHH QQ + + Q ++Q+
Sbjct: 29 HHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQ 64
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 34.3 bits (77), Expect = 0.040
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 68 AVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQ 101
A HQ Q HHH H+HHH H+HH+ Q
Sbjct: 19 AAPPHQ--QHHHHHHAHHHHHHAHHLHHHHALQQ 50
Score = 32.0 bits (71), Expect = 0.20
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 64 IREAAVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQR 107
+ EA A HHH H+HHH H+H + Q ++ Q+
Sbjct: 14 VGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQ 57
Score = 28.9 bits (63), Expect = 1.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 72 HQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQR 107
H HHH +HHH QQ N + Q ++Q+
Sbjct: 30 HHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQ 65
Score = 28.5 bits (62), Expect = 2.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 72 HQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQR 107
H HHH H HHH QQ + + Q ++Q+
Sbjct: 29 HHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQ 64
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 34.3 bits (77), Expect = 0.040
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 68 AVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQ 101
A HQ Q HHH H+HHH H+HH+ Q
Sbjct: 19 AAPPHQ--QHHHHHHAHHHHHHAHHLHHHHALQQ 50
Score = 32.0 bits (71), Expect = 0.20
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 64 IREAAVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQR 107
+ EA A HHH H+HHH H+H + Q ++ Q+
Sbjct: 14 VGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQ 57
Score = 28.9 bits (63), Expect = 1.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 72 HQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQR 107
H HHH +HHH QQ N + Q ++Q+
Sbjct: 30 HHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQ 65
Score = 28.5 bits (62), Expect = 2.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 72 HQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQR 107
H HHH H HHH QQ + + Q ++Q+
Sbjct: 29 HHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQ 64
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 33.9 bits (76), Expect = 0.052
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 59 AGHPEIREAAVAVHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQRALRIMAPKSGH 118
AG+P E + Q + HHH H+HHH QQ + + H Q + +P S
Sbjct: 51 AGYPN--EEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQ----MSSPPSAA 104
Query: 119 CHQGCI 124
H C+
Sbjct: 105 RHSLCL 110
>gi|83977459 pleckstrin homology-like domain, family A, member 1
[Homo sapiens]
Length = 401
Score = 33.9 bits (76), Expect = 0.052
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 10 LLLLQPPAFLQPGLCEPALSELDRGSGERLPQDLKPAEGGPVCVFLPSRAGHPEIREAAV 69
L+ QPP+ QP +P L + + PQ + P P + HP
Sbjct: 302 LVQQQPPSQPQP---QPQLQPQPQPQPQPQPQPQSQPQPQPQPKPQPQQL-HPYPHPHP- 356
Query: 70 AVHQGDQTHHHPGCHNHHHLEAQQHNH---HSRPQGHRKQRA 108
H H HP H H H H H HS+P GHR R+
Sbjct: 357 --HPHSHPHSHPHPHPHPHPHQIPHPHPQPHSQPHGHRLLRS 396
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 33.5 bits (75), Expect = 0.068
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 78 HHHPGCHNHHHLEA----QQHN--HHSRPQGH 103
HHH H+HHH A Q H+ HH RPQ H
Sbjct: 340 HHHHHHHHHHHHRAQPPQQSHHPPHHHRPQPH 371
Score = 28.9 bits (63), Expect = 1.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 81 PGCHNHHHLEAQQHNHHSRPQ 101
P H+HHH H+HH R Q
Sbjct: 334 PPPHHHHHHHHHHHHHHHRAQ 354
>gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
A [Homo sapiens]
Length = 353
Score = 33.1 bits (74), Expect = 0.089
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 56 PSRAGHPEIREAAVAVHQGDQ--THHHPGCHNHHHLEAQQHNHHSRPQGH 103
P AG + H G HHH H+HHH H+HH GH
Sbjct: 169 PGFAGGGGADDMGAGHHHGAHHAAHHHHAAHHHHH-----HHHHHGGAGH 213
>gi|56550035 colon carcinoma related protein [Homo sapiens]
Length = 326
Score = 33.1 bits (74), Expect = 0.089
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 71 VHQGDQTHHHPGCHNHHHLEAQQHNHHSRPQG 102
+H HHHP H HH H+HH P G
Sbjct: 222 MHDVYMRHHHPHAHMHHR-HRHHHHHHHPPAG 252
Score = 26.6 bits (57), Expect = 8.3
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 77 THHHPGCHNHHHLEAQQHNHHSRPQGHRKQRALRIMAPKSG 117
+H H HHH A H+ H H A + P G
Sbjct: 220 SHMHDVYMRHHHPHAHMHHRHRHHHHHHHPPAGSALDPSYG 260
>gi|24797153 faciogenital dysplasia protein [Homo sapiens]
Length = 961
Score = 32.7 bits (73), Expect = 0.12
Identities = 32/97 (32%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 15 PPAFLQ--PGLCEPALSELDRGSGERLPQDLKPAEGGPVCVFLPSRAGHPEIREAAVAVH 72
PPA PG EP L RGSG L L P GP L + GH +
Sbjct: 27 PPACADSDPGASEPGLLAR-RGSGSALGGPLDPQFVGPSDTSLGAAPGHR-------VLP 78
Query: 73 QGDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQRAL 109
G HH +HLE Q RP H+ R L
Sbjct: 79 CGPSPQHHRALRFSYHLEGSQ----PRPGLHQGNRIL 111
>gi|157388908 hypothetical protein LOC54954 [Homo sapiens]
Length = 1096
Score = 32.7 bits (73), Expect = 0.12
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 62 PEIREAAVAVHQGDQ---THHHPGCHNHHHLEAQQHNHHSRP 100
P + AA+ + G HHHP H HHH +AQ H P
Sbjct: 65 PPLPPAALGAYSGGAGPIRHHHPAHHFHHHGQAQPGLHPPLP 106
>gi|134288896 hypothetical protein LOC143684 [Homo sapiens]
Length = 339
Score = 32.7 bits (73), Expect = 0.12
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 75 DQTHHHPGCHNHHHLEAQQHNHHSRPQGHRK 105
++ HHP H+HHH H+HH H K
Sbjct: 163 EKDQHHPKHHHHHH-----HHHHRHSSSHHK 188
Score = 26.9 bits (58), Expect = 6.4
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 60 GHPEIREAAVAVHQGDQTH--HHPGCHNHHHLEAQQHNHHSR----------PQGHRKQR 107
G ++ ++ + DQ H HH H+HHH + H+ S Q H+
Sbjct: 150 GSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSA 209
Query: 108 ALRIMAPK 115
++ PK
Sbjct: 210 TIQNETPK 217
>gi|4504489 histidine-rich glycoprotein precursor [Homo sapiens]
Length = 525
Score = 32.7 bits (73), Expect = 0.12
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 72 HQGDQTHHHPGCHN-HHHLEAQQHNHHSRPQGHRKQRALRIMAPKSGHCHQGCIGCRCAQ 130
H+ HHP H+ H H +QH H P GH P H H C Q
Sbjct: 357 HEQHPHGHHPHAHHPHEHDTHRQHPHGHHPHGHHPHG----HHPHGHHPHGHHPHCHDFQ 412
Query: 131 NCHFGTAVPPP 141
+ +G PPP
Sbjct: 413 D--YGPCDPPP 421
Score = 26.6 bits (57), Expect = 8.3
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 72 HQGDQTHHHPGCHNHHHLEAQQHNHHSRPQGH 103
H + + HP H HH E H HH P H
Sbjct: 342 HNNNSSDLHP--HKHHSHEQHPHGHH--PHAH 369
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 32.0 bits (71), Expect = 0.20
Identities = 31/129 (24%), Positives = 41/129 (31%), Gaps = 39/129 (30%)
Query: 14 QPPAFLQPGLCEPALSELDRGSGERLPQDLKPAEGGPVCVFLPSRAGHPEIREAAVAVHQ 73
QPP + QP L P+ + +G P P L + HP
Sbjct: 423 QPPKYTQPSL--PSQAVWSQG----------PPPPPPYGRLLANSNAHP----GPFPPST 466
Query: 74 GDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQRALRIMAPKSGHCHQGCIGCRCAQNCH 133
G Q+ HP HHH QQ + Q ++Q Q H
Sbjct: 467 GAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQ-----------------------QQQH 503
Query: 134 FGTAVPPPP 142
G + PPPP
Sbjct: 504 HGNSGPPPP 512
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 32.0 bits (71), Expect = 0.20
Identities = 31/129 (24%), Positives = 41/129 (31%), Gaps = 39/129 (30%)
Query: 14 QPPAFLQPGLCEPALSELDRGSGERLPQDLKPAEGGPVCVFLPSRAGHPEIREAAVAVHQ 73
QPP + QP L P+ + +G P P L + HP
Sbjct: 423 QPPKYTQPSL--PSQAVWSQG----------PPPPPPYGRLLANSNAHP----GPFPPST 466
Query: 74 GDQTHHHPGCHNHHHLEAQQHNHHSRPQGHRKQRALRIMAPKSGHCHQGCIGCRCAQNCH 133
G Q+ HP HHH QQ + Q ++Q Q H
Sbjct: 467 GAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQ-----------------------QQQH 503
Query: 134 FGTAVPPPP 142
G + PPPP
Sbjct: 504 HGNSGPPPP 512
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 32.0 bits (71), Expect = 0.20
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 50 PVCVFLPSRAGHPEIREAAVAVHQG---DQTHHHPGCHNHHHLEAQQHNHHSRP 100
P CV+ +++ + V +G HHH H+HHH QQH S P
Sbjct: 84 PSCVY--------QMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIP 129
>gi|27894359 nuclear receptor subfamily 4, group A, member 3 isoform
c [Homo sapiens]
Length = 443
Score = 32.0 bits (71), Expect = 0.20
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 50 PVCVFLPSRAGHPEIREAAVAVHQG---DQTHHHPGCHNHHHLEAQQHNHHSRP 100
P CV+ +++ + V +G HHH H+HHH QQH S P
Sbjct: 73 PSCVY--------QMQRPLIKVEEGRAPSYHHHHHHHHHHHHHHQQQHQQPSIP 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,406,801
Number of Sequences: 37866
Number of extensions: 449691
Number of successful extensions: 2318
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1671
Number of HSP's gapped (non-prelim): 417
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.