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Search of human proteins with 29825823
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29825823 hypothetical protein LOC283987 [Homo sapiens]
(788 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29825823 hypothetical protein LOC283987 [Homo sapiens] 1596 0.0
gi|157779137 dymeclin [Homo sapiens] 47 9e-05
gi|55769554 protein tyrosine phosphatase, receptor type, f polyp... 38 0.032
gi|164419758 bromodomain containing 2 [Homo sapiens] 37 0.071
gi|4826806 bromodomain containing 2 [Homo sapiens] 37 0.071
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 37 0.093
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 37 0.093
gi|153792780 additional sex combs like 2 [Homo sapiens] 37 0.093
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 36 0.12
gi|41281612 zinc finger protein 828 [Homo sapiens] 35 0.27
gi|21389577 hypothetical protein LOC146705 [Homo sapiens] 35 0.35
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 34 0.60
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 34 0.60
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 34 0.60
gi|148228791 G protein-coupled receptor 30 [Homo sapiens] 34 0.60
gi|91106714 G protein-coupled receptor 30 [Homo sapiens] 34 0.60
gi|4504091 G protein-coupled receptor 30 [Homo sapiens] 34 0.60
gi|58082089 hypothetical protein LOC161394 [Homo sapiens] 33 0.79
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 33 1.0
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 1.8
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens] 32 2.3
gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2... 32 2.3
gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1... 32 2.3
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 32 3.0
gi|18426913 drebrin 1 isoform b [Homo sapiens] 32 3.0
gi|18426915 drebrin 1 isoform a [Homo sapiens] 32 3.0
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 32 3.0
gi|71274109 nuclear factor of kappa light polypeptide gene enhan... 31 5.1
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens] 31 5.1
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 31 5.1
>gi|29825823 hypothetical protein LOC283987 [Homo sapiens]
Length = 788
Score = 1596 bits (4133), Expect = 0.0
Identities = 788/788 (100%), Positives = 788/788 (100%)
Query: 1 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE 60
MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE
Sbjct: 1 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE 60
Query: 61 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS 120
ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS
Sbjct: 61 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS 120
Query: 121 TVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC 180
TVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC
Sbjct: 121 TVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC 180
Query: 181 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST 240
EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST
Sbjct: 181 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST 240
Query: 241 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA 300
ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA
Sbjct: 241 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA 300
Query: 301 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN 360
SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN
Sbjct: 301 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN 360
Query: 361 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH 420
STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH
Sbjct: 361 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH 420
Query: 421 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL 480
IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL
Sbjct: 421 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL 480
Query: 481 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII 540
FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII
Sbjct: 481 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII 540
Query: 541 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME 600
QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME
Sbjct: 541 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME 600
Query: 601 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS 660
GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS
Sbjct: 601 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS 660
Query: 661 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE 720
QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE
Sbjct: 661 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE 720
Query: 721 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV 780
SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV
Sbjct: 721 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV 780
Query: 781 KLFEIQRV 788
KLFEIQRV
Sbjct: 781 KLFEIQRV 788
>gi|157779137 dymeclin [Homo sapiens]
Length = 669
Score = 46.6 bits (109), Expect = 9e-05
Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 42/238 (17%)
Query: 366 QFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMHIGVFI 425
Q + +L + L N ++L +D+ ++++PIL L S +++ + I
Sbjct: 343 QTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHH--VYMALII 400
Query: 426 LLLLSGERNFGVRLNKP-------YSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQ 478
LL+L+ + F +++ YS RV +I + LLI+V + I R +
Sbjct: 401 LLILTEDDGFNRSIHEVILKNITWYSERVLTEISL-----GSLLILVVIRTIQYNMTRTR 455
Query: 479 PLF---DCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTW--FLFSAAQN-------- 525
+ +CL + N+S +SL A +++ L S L A Q+
Sbjct: 456 DKYLHTNCLAALA-NMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSN 514
Query: 526 --------------HHLVFFLLEVFNNIIQYQFDGNSNLVYAIIRKRSIFHQLANLPT 569
++ +LE+ N+ + N NLVYA++ KR +F Q P+
Sbjct: 515 DVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPS 572
>gi|55769554 protein tyrosine phosphatase, receptor type, f
polypeptide (PTPRF), interacting protein (liprin), alpha
4 [Homo sapiens]
Length = 701
Score = 38.1 bits (87), Expect = 0.032
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 579 QRRRRTPEPLSRTGSQEGTSMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTL 638
+ RR+ P+SR ++E + + P+ P TL+ + P + + KS + + G+
Sbjct: 190 KHRRKLLSPVSREENREDKATIKCETSPPSSPRTLRLEKLGHPALSQEEGKSALEDQGSN 249
Query: 639 RSLEPEPQQSLEDGSPAKGEPSQAWR 664
S Q SL G+ KG S R
Sbjct: 250 PSSSNSSQDSLHKGAKRKGIKSSIGR 275
>gi|164419758 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 37.0 bits (84), Expect = 0.071
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 604 PAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPSQAW 663
P P EPG L S PG+ K + +S E + S E E ++ ED + E S +
Sbjct: 454 PDEPLEPGPLPVSTAMPPGLAKSSSESSSEESSSESSSEEEEEEDEEDEEEEESESSDSE 513
Query: 664 REQ 666
E+
Sbjct: 514 EER 516
>gi|4826806 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 37.0 bits (84), Expect = 0.071
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 604 PAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPSQAW 663
P P EPG L S PG+ K + +S E + S E E ++ ED + E S +
Sbjct: 454 PDEPLEPGPLPVSTAMPPGLAKSSSESSSEESSSESSSEEEEEEDEEDEEEEESESSDSE 513
Query: 664 REQ 666
E+
Sbjct: 514 EER 516
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 36.6 bits (83), Expect = 0.093
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 602 SRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPSQ 661
S AAP E + AT + S S G PEP ++ GS G P+
Sbjct: 63 SSAAAPEEEAE---AAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAP 119
Query: 662 AWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRL 700
++P+ S+ SG + PEW W PLQ ++ L
Sbjct: 120 PPSGDQQPAPSAGSGSTADLPEW--PW----PLQLLLLL 152
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 36.6 bits (83), Expect = 0.093
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 602 SRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPSQ 661
S AAP E + AT + S S G PEP ++ GS G P+
Sbjct: 63 SSAAAPEEEAE---AAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAP 119
Query: 662 AWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRL 700
++P+ S+ SG + PEW W PLQ ++ L
Sbjct: 120 PPSGDQQPAPSAGSGSTADLPEW--PW----PLQLLLLL 152
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 36.6 bits (83), Expect = 0.093
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 13/134 (9%)
Query: 558 RSIFHQLANLPTDPPTIHKALQRR-----RRTPEPLSRTGSQEGTSMEGSRPAAPAEPG- 611
+++ + N P I + +QR R PL+ + T+ G PG
Sbjct: 18 KTVLEKYPNTPMSHKEILQVIQREGLKEIRSGTSPLACLNAMLHTNSRGEEGIFYKVPGR 77
Query: 612 ----TLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPSQAWREQR 667
TLK + G+ +L+E S+ S DG S E S DG K W+ ++
Sbjct: 78 MGVYTLKKDV--PDGVKELSEGSEESSDGQSDSQSSENSSSSSDGGSNKEGKKSRWK-RK 134
Query: 668 RPSTSSASGQWSPT 681
S+S SG SPT
Sbjct: 135 VSSSSPQSGCPSPT 148
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 36.2 bits (82), Expect = 0.12
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 568 PTDPPTIHKALQRRRRTPE-PLSRTGSQEGTSMEGSRPAAPAEPGTLKTSLVATPGIDKL 626
P PP +A +R T + P Q+ +S +GSR A P T +S + DK
Sbjct: 273 PPPPPPPPRASSKRPATADSPKPSAKKQKKSSSKGSRSAPGTSPRTSSSSSFS----DKK 328
Query: 627 TEKSQVSEDGTLRSLEPEPQQS-----LEDGSPAKGEPSQAWREQRRPSTSSASGQWSPT 681
K + S G E EP+++ +E+ + ++ Q PS SS+S S
Sbjct: 329 PAKDKSSTRGEKVKAESEPREAKKALEVEESNSEDEASFKSESAQSSPSNSSSSSDSSSD 388
Query: 682 PEWVLSWK-SKLPLQTIMRLLQ 702
++ S S+ PL++++ LQ
Sbjct: 389 SDFEPSQNHSQGPLRSMVEDLQ 410
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 35.0 bits (79), Expect = 0.27
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 21/129 (16%)
Query: 581 RRRTPEPLSRTGSQE--------GTSMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQV 632
R +PEP + S+ S E RPA PG+ K PG + + +
Sbjct: 272 RTTSPEPRKPSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWKPG---PPGSPRPWKSNPS 328
Query: 633 SEDGTLRSLEPEPQQSLEDGSPAKGEPSQAWREQRRPSTSSAS--------GQWSPTPEW 684
+ G + +P P S P W+ PS SSAS W P
Sbjct: 329 ASSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPT--PSVSSASWKSSSVSPSSWKSPPAS 386
Query: 685 VLSWKSKLP 693
SWKS P
Sbjct: 387 PESWKSGPP 395
>gi|21389577 hypothetical protein LOC146705 [Homo sapiens]
Length = 525
Score = 34.7 bits (78), Expect = 0.35
Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 23/160 (14%)
Query: 546 GNSNLV---YAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSMEGS 602
G+S+L+ + ++R R +L+ + + P +KA + R + GTS E
Sbjct: 308 GSSDLLPQEHILLRTRPWLQELS-MGSPGPVTNKATKILRHFEASCGQLSPARGTSAEPG 366
Query: 603 RPAAPAEPGTLKTSLVATPGID---------KLTEKSQVSEDGTLRSLEPEPQQSLEDGS 653
AA P L T V PG ++ +S G S P P
Sbjct: 367 PTAALPGPSDLLTDAVPLPGSQVFLQPLSSTPVSSRSPAPSSGMPSSPVPTPPPDASP-I 425
Query: 654 PAKGEPSQA---------WREQRRPSTSSASGQWSPTPEW 684
PA G+PS+A WR +R P + + + + W
Sbjct: 426 PAPGDPSEAEARLAESRRWRPERIPGGTDSPKRGPSSCAW 465
>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 33.9 bits (76), Expect = 0.60
Identities = 40/137 (29%), Positives = 52/137 (37%), Gaps = 24/137 (17%)
Query: 562 HQLANLPT---DPPTIHKALQRRRRTPEPLSRTGSQEGTSMEGSRPAAPAEPGTLK--TS 616
H LA PT DP H+ E + +GS+E + +P +PA PG + S
Sbjct: 85 HGLAPAPTTIRDPEAGHQERPEEEGEDEAEASSGSEEEPAPSSLQPGSPASPGPGRRLCS 144
Query: 617 LVATPGI--------DKLTEKSQVSEDGTL---------RSLEPEPQQSLEDGSPAKGEP 659
L G+ +L+E VS L SL P P QS SP P
Sbjct: 145 LDVLRGVRLELAGARRRLSEGKLVSRPRALLHGLRGHRALSLCPSPAQSPRSASPPGPAP 204
Query: 660 SQ--AWREQRRPSTSSA 674
A RPST+ A
Sbjct: 205 QHPAAPASPPRPSTAGA 221
>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 33.9 bits (76), Expect = 0.60
Identities = 40/137 (29%), Positives = 52/137 (37%), Gaps = 24/137 (17%)
Query: 562 HQLANLPT---DPPTIHKALQRRRRTPEPLSRTGSQEGTSMEGSRPAAPAEPGTLK--TS 616
H LA PT DP H+ E + +GS+E + +P +PA PG + S
Sbjct: 85 HGLAPAPTTIRDPEAGHQERPEEEGEDEAEASSGSEEEPAPSSLQPGSPASPGPGRRLCS 144
Query: 617 LVATPGI--------DKLTEKSQVSEDGTL---------RSLEPEPQQSLEDGSPAKGEP 659
L G+ +L+E VS L SL P P QS SP P
Sbjct: 145 LDVLRGVRLELAGARRRLSEGKLVSRPRALLHGLRGHRALSLCPSPAQSPRSASPPGPAP 204
Query: 660 SQ--AWREQRRPSTSSA 674
A RPST+ A
Sbjct: 205 QHPAAPASPPRPSTAGA 221
>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 33.9 bits (76), Expect = 0.60
Identities = 40/137 (29%), Positives = 52/137 (37%), Gaps = 24/137 (17%)
Query: 562 HQLANLPT---DPPTIHKALQRRRRTPEPLSRTGSQEGTSMEGSRPAAPAEPGTLK--TS 616
H LA PT DP H+ E + +GS+E + +P +PA PG + S
Sbjct: 85 HGLAPAPTTIRDPEAGHQERPEEEGEDEAEASSGSEEEPAPSSLQPGSPASPGPGRRLCS 144
Query: 617 LVATPGI--------DKLTEKSQVSEDGTL---------RSLEPEPQQSLEDGSPAKGEP 659
L G+ +L+E VS L SL P P QS SP P
Sbjct: 145 LDVLRGVRLELAGARRRLSEGKLVSRPRALLHGLRGHRALSLCPSPAQSPRSASPPGPAP 204
Query: 660 SQ--AWREQRRPSTSSA 674
A RPST+ A
Sbjct: 205 QHPAAPASPPRPSTAGA 221
>gi|148228791 G protein-coupled receptor 30 [Homo sapiens]
Length = 375
Score = 33.9 bits (76), Expect = 0.60
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 349 LSNPLLQTYLPNSTKKIQFHQELLVLFWKLC---------DFNKKFLFFVLKSSDVLDIL 399
LS+PLL T L N T ++ HQ+ ++ + C F L V+ S +
Sbjct: 33 LSHPLLGTALANGTGELSEHQQYVIGLFLSCLYTIFLFPIGFVGNILILVVNISFREKMT 92
Query: 400 VPILFFLNDARADQSRVGLMHIGVFIL 426
+P L+F+N A AD V I VF L
Sbjct: 93 IPDLYFINLAVADLILVADSLIEVFNL 119
>gi|91106714 G protein-coupled receptor 30 [Homo sapiens]
Length = 375
Score = 33.9 bits (76), Expect = 0.60
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 349 LSNPLLQTYLPNSTKKIQFHQELLVLFWKLC---------DFNKKFLFFVLKSSDVLDIL 399
LS+PLL T L N T ++ HQ+ ++ + C F L V+ S +
Sbjct: 33 LSHPLLGTALANGTGELSEHQQYVIGLFLSCLYTIFLFPIGFVGNILILVVNISFREKMT 92
Query: 400 VPILFFLNDARADQSRVGLMHIGVFIL 426
+P L+F+N A AD V I VF L
Sbjct: 93 IPDLYFINLAVADLILVADSLIEVFNL 119
>gi|4504091 G protein-coupled receptor 30 [Homo sapiens]
Length = 375
Score = 33.9 bits (76), Expect = 0.60
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 349 LSNPLLQTYLPNSTKKIQFHQELLVLFWKLC---------DFNKKFLFFVLKSSDVLDIL 399
LS+PLL T L N T ++ HQ+ ++ + C F L V+ S +
Sbjct: 33 LSHPLLGTALANGTGELSEHQQYVIGLFLSCLYTIFLFPIGFVGNILILVVNISFREKMT 92
Query: 400 VPILFFLNDARADQSRVGLMHIGVFIL 426
+P L+F+N A AD V I VF L
Sbjct: 93 IPDLYFINLAVADLILVADSLIEVFNL 119
>gi|58082089 hypothetical protein LOC161394 [Homo sapiens]
Length = 674
Score = 33.5 bits (75), Expect = 0.79
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 605 AAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEP-----EPQQSLEDGSPAKGEP 659
+ P E G L+ PG+ KL E ++ S P EPQ E+ +GEP
Sbjct: 10 SGPDEDGELEPERPELPGLHKLYENAEPDTMAKADSKLPAEIYQEPQPETEEEDFKEGEP 69
Query: 660 SQAWREQRRPSTSSASG 676
A Q +P +S G
Sbjct: 70 DSAKNVQLKPGGTSQEG 86
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 33.1 bits (74), Expect = 1.0
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 580 RRRRTP--EPLSRTGSQEGTSMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKS---QVSE 634
RRR +P R+ S+ SR +PA KT + P + K+ E S S
Sbjct: 183 RRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSV-KVKEPSVQEATST 241
Query: 635 DGTLRSLEPEPQQSLEDGSPAKGEPSQAWREQRRPSTSSASGQWSPT 681
L+ +PEP ++ SP K + +E+ RP + S S S T
Sbjct: 242 SDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRT 288
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.3 bits (72), Expect = 1.8
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Query: 564 LANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSMEGSRPAAPAEPGTLKTSLVATPGI 623
L +P+ P +A+ R R PEP + +S S ++ + + +S ++
Sbjct: 2576 LKRVPSPTPAPKEAV-REGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2634
Query: 624 DKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPSQ-AWREQRRPSTS---SASGQWS 679
+ S S + +P PQ + SP K P + R R+P S S S +S
Sbjct: 2635 SSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYS 2694
Query: 680 P 680
P
Sbjct: 2695 P 2695
>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
Length = 4374
Score = 32.0 bits (71), Expect = 2.3
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 580 RRRRTPEPLSRTGSQEGTSMEGSRPAAPAEPGTLKTSLVATPGIDKLTEK---------- 629
RRRR+ +PL T S G++++ P TLKT AT I KL E+
Sbjct: 644 RRRRSSDPLGDTASNLGSAVDELMRHQP----TLKTD--ATTAIIKLLEEICNLGRDPKY 697
Query: 630 -----SQVSEDGTLRSLEPEPQQSLEDGSPAKGEPSQAWREQRRPSTSSASGQWSPTPEW 684
S DGT + P + E+ S E + Q S +S + +
Sbjct: 698 ICQKPSIQKADGTATAPPPRSNHAAEEASSEDEEEEEV---QAMQSFNSTQQNETEPNQQ 754
Query: 685 VLSWKSKLPLQTIMRLLQVL 704
V+ + ++P+ + +L V+
Sbjct: 755 VVGTEERIPIPLMDYILNVM 774
>gi|125625322 RALBP1 associated Eps domain containing 2 isoform 2
[Homo sapiens]
Length = 659
Score = 32.0 bits (71), Expect = 2.3
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 573 TIHKALQRRRR--TPEPLSRTGSQEGTSMEGSR---PAAPAEPGTLKTSLVATPGIDKLT 627
+I +A++R TP P + +S++ ++ P+ PA L A P +
Sbjct: 465 SIEEAMKRGEDPPTPPPRPQKTHSRASSLDLNKVFQPSVPATKSGLLPPPPALPPRPCPS 524
Query: 628 EKSQVSEDGTLRSLEPEPQQSLEDGSPAKGE------PSQAWREQRRPSTSSASGQ 677
+ QVSE L L P Q+ E SPAK + PS+ R + RP + Q
Sbjct: 525 QSEQVSEAELLPQLSRAPSQAAE-SSPAKKDVLYSQPPSKPIRRKFRPENQATENQ 579
>gi|125625326 RALBP1 associated Eps domain containing 2 isoform 1
[Homo sapiens]
Length = 660
Score = 32.0 bits (71), Expect = 2.3
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 573 TIHKALQRRRR--TPEPLSRTGSQEGTSMEGSR---PAAPAEPGTLKTSLVATPGIDKLT 627
+I +A++R TP P + +S++ ++ P+ PA L A P +
Sbjct: 466 SIEEAMKRGEDPPTPPPRPQKTHSRASSLDLNKVFQPSVPATKSGLLPPPPALPPRPCPS 525
Query: 628 EKSQVSEDGTLRSLEPEPQQSLEDGSPAKGE------PSQAWREQRRPSTSSASGQ 677
+ QVSE L L P Q+ E SPAK + PS+ R + RP + Q
Sbjct: 526 QSEQVSEAELLPQLSRAPSQAAE-SSPAKKDVLYSQPPSKPIRRKFRPENQATENQ 580
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 31.6 bits (70), Expect = 3.0
Identities = 32/148 (21%), Positives = 65/148 (43%), Gaps = 12/148 (8%)
Query: 544 FDGNSNLVYAIIRKRSIFH---QLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME 600
FD N+ + Y + + S+ + P+ P ++ K + + P S+ S+ S+
Sbjct: 983 FDNNNQIAY-VDQSDSVDSSPVKEVKAPSHPGSLAKKPESTTKR-SPSSKGTSEPEKSLR 1040
Query: 601 GSRPAAPAEPGTLKTSLVATPGIDKLT-------EKSQVSEDGTLRSLEPEPQQSLEDGS 653
RPA ++ +L ++ ++P K++ K+ S G+ R P P Q ++ S
Sbjct: 1041 KGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSKADSSSRGSGRHSSPAPAQPKKESS 1100
Query: 654 PAKGEPSQAWREQRRPSTSSASGQWSPT 681
P + + Q++ S S+ + S T
Sbjct: 1101 PKSQDSVSSPSPQKQKSASALTYTASST 1128
>gi|18426913 drebrin 1 isoform b [Homo sapiens]
Length = 651
Score = 31.6 bits (70), Expect = 3.0
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 592 GSQEGTSMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSED---GTLRSLE--PEPQ 646
G+ EG S P AP P + +L P +D++ + + TL + + PEP
Sbjct: 483 GNGEGASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPEPP 542
Query: 647 QSLEDGSPAKGEPSQAWREQRRPS 670
+ D +GEP A + PS
Sbjct: 543 ATFCDPEEVEGEPLAAPQTPTLPS 566
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 31.6 bits (70), Expect = 3.0
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 592 GSQEGTSMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSED---GTLRSLE--PEPQ 646
G+ EG S P AP P + +L P +D++ + + TL + + PEP
Sbjct: 481 GNGEGASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPEPP 540
Query: 647 QSLEDGSPAKGEPSQAWREQRRPS 670
+ D +GEP A + PS
Sbjct: 541 ATFCDPEEVEGEPLAAPQTPTLPS 564
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 31.6 bits (70), Expect = 3.0
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 15/144 (10%)
Query: 578 LQRRRRTPEPLSRTGSQEGTSMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGT 637
++++R+ EP + G+ +G+ +P EP K A K +DG
Sbjct: 92 VKKKRKKKEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGA 151
Query: 638 LRSLEPEPQQSLEDGSPAKGEPSQAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTI 697
++ +P ++ + A R + R AS + PTP K K +T
Sbjct: 152 KKARKPREASGTKEAKEKRSCTDSAARTKSR----KASKEQGPTPV-EKKKKGKRKSET- 205
Query: 698 MRLLQVLVPQVEKICIDKGLTDES 721
VE + +D+GLT+ S
Sbjct: 206 ---------TVESLELDQGLTNPS 220
>gi|71274109 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, epsilon [Homo sapiens]
Length = 500
Score = 30.8 bits (68), Expect = 5.1
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 564 LANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSMEGSRPAAPAEPGTLKTSLV----A 619
L++L P H +R R PL + Q G + S PA+ G A
Sbjct: 84 LSSLRAGPSEPHSPGRRPPRAGRPLCQADPQPGKAARRSLEPDPAQTGPRPARAAGMSEA 143
Query: 620 TPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGS-PAKGEP 659
G D+ E S +LRSL P+ + S P+ G P
Sbjct: 144 RKGPDEAEESQYDSGIESLRSLRSLPESTSAPASGPSDGSP 184
>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
Length = 340
Score = 30.8 bits (68), Expect = 5.1
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 587 PLSRTGSQEGTSMEGSRPAAPAEPGTLKTS-LVATPGIDKLTEKSQVSED---GTLRSLE 642
P + ++ ++ G PAAPA PG + V + + + + SED S
Sbjct: 61 PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA 120
Query: 643 PEPQQSLE--DGSPAKGEPSQAWREQRRPSTSSASGQ 677
P PQ+ E DG P KG+ S PS GQ
Sbjct: 121 PPPQRDEEEPDGVPEKGKSS-------GPSARKGKGQ 150
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 30.8 bits (68), Expect = 5.1
Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 4/116 (3%)
Query: 583 RTPEPLSRTGSQEGTSMEGSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLE 642
R PE S G + RPA+P +S + L+ + + E+G+
Sbjct: 304 RGPEDSWLLLSAPGPTPASPRPASPCGKRRYSSSGTPSSASPALSRRGSLGEEGSEPPPP 363
Query: 643 PEPQQSLEDGSPAK----GEPSQAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPL 694
P + + GSP G P Q+ TSS P E S KLPL
Sbjct: 364 PPLPLARDPGSPGPFDYVGAPPAESIPQKTRRTSSEQAVALPRSEEPASCNGKLPL 419
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,131,794
Number of Sequences: 37866
Number of extensions: 1584298
Number of successful extensions: 5269
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 5220
Number of HSP's gapped (non-prelim): 87
length of query: 788
length of database: 18,247,518
effective HSP length: 110
effective length of query: 678
effective length of database: 14,082,258
effective search space: 9547770924
effective search space used: 9547770924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.