Guide to the Human Genome
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Name: C17orf28 Sequence: fasta or formatted (788aa) NCBI GI: 29825823
Description:

hypothetical protein LOC283987

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         50           2
 C cysteine            1.4         11           1
 D aspartate           5.5         43           2
 E glutamate           5.8         46           2
 F phenylalanine       5.3         42           2
 G glycine             4.9         39           2
 H histidine           2.8         22           2
 I isoleucine          4.8         38           2
 K lysine              3.9         31           2
 L leucine            12.4         98           4
 M methionine          1.5         12           1
 N asparagine          3.4         27           2
 P proline             6.7         53           2
 Q glutamine           4.6         36           2
 R arginine            5.1         40           4
 S serine              7.9         62           2
 T threonine           6.3         50           3
 V valine              6.9         54           2
 W tryptophan          1.9         15           1
 Y tyrosine            2.4         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC283987 
DYM                   0.014   dymeclin 
PPFIA4                0.008   protein tyrosine phosphatase, receptor type, f polyp...
BRD2                  0.008   bromodomain containing 2 
BRD2                  0.008   bromodomain containing 2 
LOC100291061          0.008   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.008   PREDICTED: hypothetical protein XP_002343855 
ASXL2                 0.008   additional sex combs like 2 
MLLT1                 0.007   myeloid/lymphoid or mixed-lineage leukemia (trithora...
ZNF828                0.006   zinc finger protein 828 
C17orf56              0.006   hypothetical protein LOC146705 
LOC390595             0.006   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.006   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.006   PREDICTED: hypothetical protein 
GPER                  0.006   G protein-coupled receptor 30 
GPER                  0.006   G protein-coupled receptor 30 
GPER                  0.006   G protein-coupled receptor 30 
C14orf174             0.005   hypothetical protein LOC161394 
SRRM1                 0.005   serine/arginine repetitive matrix 1 
SRRM2                 0.004   splicing coactivator subunit SRm300 
HUWE1                 0.004   HECT, UBA and WWE domain containing 1 
REPS2                 0.004   RALBP1 associated Eps domain containing 2 isoform 2...
REPS2                 0.004   RALBP1 associated Eps domain containing 2 isoform 1...
USP31                 0.004   ubiquitin specific peptidase 31 
DBN1                  0.004   drebrin 1 isoform b 
DBN1                  0.004   drebrin 1 isoform a 
CHD6                  0.004   chromodomain helicase DNA binding protein 6 
NFKBIE                0.004   nuclear factor of kappa light polypeptide gene enhan...
PAWR                  0.004   PRKC, apoptosis, WT1, regulator 
NFATC4                0.004   nuclear factor of activated T-cells, cytoplasmic, c...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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