Guide to the Human Genome
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Name: C17orf56 Sequence: fasta or formatted (525aa) NCBI GI: 21389577
Description:

hypothetical protein LOC146705

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         54           3
 C cysteine            2.5         13           1
 D aspartate           4.2         22           3
 E glutamate           5.1         27           2
 F phenylalanine       2.9         15           2
 G glycine             8.6         45           3
 H histidine           2.9         15           1
 I isoleucine          2.3         12           1
 K lysine              2.5         13           1
 L leucine            12.0         63           2
 M methionine          1.0          5           1
 N asparagine          1.3          7           1
 P proline            10.5         55           3
 Q glutamine           4.4         23           2
 R arginine            6.3         33           2
 S serine             13.7         72           3
 T threonine           4.4         23           1
 V valine              3.6         19           2
 W tryptophan          0.8          4           1
 Y tyrosine            1.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC146705 
KIAA1522              0.022   hypothetical protein LOC57648 
BAG3                  0.022   BCL2-associated athanogene 3 
UTF1                  0.022   undifferentiated embryonic cell transcription factor...
NCCRP1                0.022   non-specific cytotoxic cell receptor protein 1 homol...
OGFR                  0.021   opioid growth factor receptor 
CASKIN2               0.021   cask-interacting protein 2 isoform b 
CASKIN2               0.021   cask-interacting protein 2 isoform a 
ZNF358                0.021   zinc finger protein 358 
WIPF1                 0.021   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.021   WAS/WASL interacting protein family, member 1 
CREBBP                0.021   CREB binding protein isoform b 
CREBBP                0.021   CREB binding protein isoform a 
NACA                  0.021   nascent polypeptide-associated complex alpha subuni...
LDB3                  0.020   LIM domain binding 3 isoform 2 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.020   PREDICTED: hypothetical protein LOC80164 
PTPN23                0.020   protein tyrosine phosphatase, non-receptor type 23 [...
FMNL1                 0.020   formin-like 1 
EIF3F                 0.019   eukaryotic translation initiation factor 3, subunit 5...
ZNF827                0.019   zinc finger protein 827 
PRG4                  0.019   proteoglycan 4 isoform D 
PRG4                  0.019   proteoglycan 4 isoform C 
PRG4                  0.019   proteoglycan 4 isoform B 
PRG4                  0.019   proteoglycan 4 isoform A 
KIAA0754              0.019   hypothetical protein LOC643314 
MUC7                  0.019   mucin 7, secreted precursor 
MUC7                  0.019   mucin 7, secreted precursor 
MUC7                  0.019   mucin 7, secreted precursor 
LMTK3                 0.018   lemur tyrosine kinase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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