Guide to the Human Genome
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Name: LOC390595 Sequence: fasta or formatted (290aa) NCBI GI: 239756307
Description:

PREDICTED: similar to ubiquitin-associated protein 1 (predicted)

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt mRNA [290aa] PREDICTED: hypothetical protein
alt mRNA [290aa] PREDICTED: similar to ubiquitin-associated protein 1 (predicted)
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         31           2
 C cysteine            1.7          5           1
 D aspartate           2.4          7           1
 E glutamate           6.6         19           3
 F phenylalanine       1.7          5           1
 G glycine             9.3         27           1
 H histidine           3.4         10           1
 I isoleucine          2.4          7           2
 K lysine              1.4          4           1
 L leucine            12.8         37           3
 M methionine          0.7          2           1
 N asparagine          0.3          1           1
 P proline            17.2         50           2
 Q glutamine           2.1          6           1
 R arginine            7.6         22           3
 S serine             10.3         30           2
 T threonine           2.8          8           2
 V valine              4.8         14           2
 W tryptophan          1.0          3           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ubiquitin-associated protein ... 
LOC390595             1.000   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             1.000   PREDICTED: hypothetical protein 
NFATC1                0.052   nuclear factor of activated T-cells, cytosolic compo...
WBP11                 0.045   WW domain binding protein 11 
FAM110A               0.045   hypothetical protein LOC83541 
FAM110A               0.045   hypothetical protein LOC83541 
FAM110A               0.045   hypothetical protein LOC83541 
PLEKHA4               0.044   pleckstrin homology domain containing family A memb...
MAST3                 0.044   microtubule associated serine/threonine kinase 3 [H...
SGIP1                 0.044   SH3-domain GRB2-like (endophilin) interacting prote...
LOC100289242          0.042   PREDICTED: hypothetical protein XP_002342243 
LOC100287256          0.042   PREDICTED: hypothetical protein 
LOC100287256          0.042   PREDICTED: hypothetical protein XP_002342497 
MLL4                  0.042   myeloid/lymphoid or mixed-lineage leukemia 4 
C1orf65               0.040   hypothetical protein LOC164127 
LOC100290551          0.040   PREDICTED: hypothetical protein XP_002346417 
LOC100287437          0.040   PREDICTED: hypothetical protein XP_002342117 
LOC100292589          0.040   PREDICTED: hypothetical protein 
LOC100293496          0.040   PREDICTED: hypothetical protein 
LOC100290121          0.040   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.040   PREDICTED: hypothetical protein XP_002342721 
TAF4                  0.038   TBP-associated factor 4 
SYNPO                 0.038   synaptopodin isoform A 
SAMD1                 0.038   sterile alpha motif domain containing 1 
SASH1                 0.038   SAM and SH3 domain containing 1 
GLTSCR1               0.038   glioma tumor suppressor candidate region gene 1 [Ho...
TPRX1                 0.038   tetra-peptide repeat homeobox 
LOC100292727          0.038   PREDICTED: hypothetical protein 
LMTK3                 0.038   lemur tyrosine kinase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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